Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP1-224A6.2	Gene	0	75.16	52.18	42.89	178.98	76.96	51.45	196.73	54.07	57.07	45.82	46.84	28.74	145.66	58.93	147.66	78.75	72.99	54.71	175.86	145.16	30.60	52.81	39.38	109.71	74.28	97.50	28.60	69.12	37.70
2	434233	Transcript	1	3.24	0.44	2.74	0.00	0.00	1.82	13.97	8.23	0.00	1.19	1.70	0.17	0.00	0.64	0.00	0.00	1.44	0.80	0.00	0.01	0.59	1.77	0.25	0.33	2.75	1.72	2.42	0.00	0.56
3	420503	Transcript	0	6.90	1.29	3.81	60.41	9.29	8.86	22.37	3.60	4.62	4.52	3.58	2.22	15.41	7.54	8.46	24.04	8.18	11.54	21.58	18.14	3.94	9.20	5.69	5.03	3.45	8.03	1.01	4.38	6.09
4	416769	Transcript	0	23.76	25.02	12.03	65.04	22.45	8.03	44.12	10.15	22.15	11.11	8.43	5.29	79.20	21.38	52.73	16.63	24.70	17.05	82.59	40.48	7.12	11.58	7.03	33.84	16.38	31.21	3.00	12.40	11.13
5	452322	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	1.11	1.36	2.40	6.59	2.47	0.00	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00
6	404210	Transcript	0	84.32	43.24	58.85	174.71	66.10	49.86	196.79	49.29	92.58	54.55	46.47	29.41	111.14	50.63	158.16	74.17	88.93	8.09	0.00	158.70	36.08	77.71	38.22	153.61	88.16	50.25	17.94	88.27	50.48
7	IG9	Intergenic	0	2.99	0.00	2.34	0.00	10.24	0.96	18.31	1.71	0.26	2.02	0.83	0.00	0.00	0.53	1.28	1.16	0.35	0.45	1.49	0.00	1.00	1.26	3.37	0.00	1.00	0.00	0.85	0.00	0.31
8	IG9_SR1	SilentIntergenicRegion	0	3.02	0.00	2.36	0.00	10.33	0.97	18.47	1.73	0.26	2.04	0.84	0.00	0.00	0.53	1.29	1.17	0.35	0.45	1.50	0.00	1.01	1.26	3.40	0.00	1.00	0.00	0.86	0.00	0.32
9	ER1a	ExonRegion	0	3.71	0.89	3.93	0.00	0.00	2.23	19.77	5.45	0.00	2.39	1.78	0.34	0.00	0.32	0.00	0.00	1.78	1.59	0.00	0.02	1.18	1.35	0.50	0.65	1.95	1.64	2.96	0.00	1.11
10	E1a_E5a	KnownJunction	0	2.77	0.00	1.54	0.00	0.00	1.42	8.18	11.00	0.00	0.00	1.61	0.00	0.00	0.95	0.00	0.00	1.10	0.00	0.00	0.00	0.00	2.19	0.00	0.00	3.56	1.80	1.89	0.00	0.00
11	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	9.49	13.12	3.38	12.70	2.24	0.00	1.68	0.00	0.00	0.00	0.00	8.37	2.75	0.00	9.25	16.18	3.72	5.29	4.42	0.00	0.00	0.00	20.00	0.00	0.00	1.35
12	E2_Ab	NovelBoundary	0	42.06	20.84	35.55	571.80	111.41	50.76	167.47	19.86	12.97	22.97	15.88	12.35	130.43	44.93	60.19	158.58	33.18	37.37	121.39	140.34	31.41	61.55	44.72	33.98	18.94	130.16	11.48	55.45	43.05
13	ER2a	ExonRegion	0	15.00	2.46	11.50	229.13	19.93	20.45	59.13	8.21	5.10	4.87	4.61	7.32	57.54	15.31	30.34	55.25	16.24	25.13	52.61	47.43	10.34	26.37	11.38	7.53	3.57	24.29	4.04	12.23	17.73
14	ER2b	ExonRegion	0	61.73	24.46	53.36	442.66	146.27	50.94	194.51	24.85	36.87	29.88	35.79	23.47	108.89	32.53	75.63	72.02	58.72	32.88	116.72	71.87	28.17	48.98	38.85	51.26	56.19	99.00	34.69	61.32	41.33
15	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.69	0.00	0.00	0.00	0.00	0.00	0.00	1.17	7.37	0.00	7.29	0.00	0.00	3.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E2a_E5a	NovelJunction	0	5.72	0.00	5.58	0.00	0.00	1.53	16.36	0.00	1.34	2.08	0.00	0.00	13.28	1.97	7.97	3.37	5.69	4.62	8.09	11.83	1.85	4.28	2.27	3.05	0.00	4.46	0.00	6.02	3.63
18	E2_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.39	4.62	0.00	4.13	0.00	0.00	2.41	5.92	0.00	0.00	0.00	2.25	0.00
19	E2b_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.89	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.25	0.00
20	E2b_E5a	KnownJunction	0	26.07	0.00	3.36	82.61	13.71	1.76	41.71	7.27	7.83	9.23	2.59	4.43	21.97	7.91	8.17	3.82	6.66	9.25	0.00	25.72	7.86	7.05	4.78	18.18	4.96	9.74	0.00	6.20	12.74
21	ER2c	ExonRegion	0	19.83	0.00	13.46	65.81	14.94	5.50	42.83	7.36	5.62	7.94	7.14	7.73	27.28	14.06	23.80	16.45	15.53	7.51	12.45	26.70	4.28	9.01	5.42	23.12	10.36	6.29	3.66	6.52	12.08
22	I2	Intron	0	6.39	5.20	4.20	10.50	6.13	7.41	7.49	2.41	2.58	5.06	1.12	2.42	0.88	7.27	9.08	12.04	19.13	9.96	11.36	11.89	4.40	1.70	1.32	7.76	5.46	2.63	0.29	5.88	3.43
23	I2_AR1	ActiveIntronRegion	0	6.99	1.17	5.88	8.06	3.37	6.23	5.18	2.19	2.67	4.55	0.49	2.37	0.99	8.22	11.07	10.30	21.96	9.34	8.84	10.49	2.69	2.81	2.35	6.36	3.82	2.63	0.20	6.78	3.87
24	I2_SR1	SilentIntronRegion	0	6.01	7.95	3.07	12.19	8.02	8.24	9.08	2.56	2.53	5.42	1.55	2.46	0.81	6.65	7.75	13.27	17.28	10.41	13.11	12.88	5.58	0.95	0.64	8.74	6.58	2.64	0.35	5.29	3.14
25	E3_Aa	NovelBoundary	0	8.14	22.10	2.87	8.84	7.37	6.52	10.93	2.54	9.74	13.62	11.29	7.20	4.01	17.13	34.08	26.47	47.99	38.14	16.18	22.66	10.63	2.04	0.00	11.54	3.37	7.68	0.00	8.99	7.33
26	ER3a	ExonRegion	0	9.58	2.71	1.55	1.93	3.38	15.00	8.68	6.21	7.45	5.72	3.55	1.56	2.11	11.45	3.52	24.55	12.74	11.80	17.54	17.54	5.42	6.44	2.30	9.53	6.43	7.83	0.00	3.02	3.23
27	E3_Da	NovelBoundary	0	0.00	8.73	6.68	52.41	0.00	6.60	12.93	2.19	1.71	3.64	1.61	4.82	0.00	8.20	42.65	6.73	24.90	9.25	15.96	17.70	3.65	0.00	0.00	10.41	0.00	2.06	0.00	2.29	4.19
28	E3a_E5a	KnownJunction	0	3.01	0.00	2.19	10.57	13.85	0.00	21.68	0.00	5.94	7.51	4.56	0.00	1.97	2.26	0.00	16.37	3.74	9.25	16.18	7.61	0.00	3.99	9.06	3.05	3.79	0.00	0.00	2.29	3.40
29	I3	Intron	0	9.39	4.14	3.94	11.28	3.84	9.57	6.57	4.76	4.59	6.49	3.34	3.04	0.29	10.27	21.69	12.39	26.83	10.10	17.94	12.30	3.20	0.81	0.81	7.97	6.42	5.65	0.00	4.94	3.83
30	I3_SR1	SilentIntronRegion	0	9.43	4.16	3.96	11.32	3.86	9.62	6.60	4.78	4.61	6.52	3.36	3.05	0.29	10.32	21.78	12.44	26.95	10.14	18.02	12.36	3.22	0.81	0.82	8.01	6.45	5.67	0.00	4.97	3.84
31	E4_Aa	NovelBoundary	0	2.30	3.97	3.79	10.78	6.93	8.63	25.75	2.44	2.89	6.91	3.23	6.99	0.00	4.83	57.80	27.46	34.60	19.65	0.00	2.98	3.77	0.00	0.00	12.92	8.22	3.78	0.00	9.62	4.82
32	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.80	0.00	2.22	0.00	4.79	5.08	4.94	0.00	0.00	0.00	0.00	0.00	1.19	0.00	0.00	0.00
33	E4_Da	NovelBoundary	0	5.90	0.00	0.00	28.47	7.22	37.18	24.72	2.24	13.43	14.70	0.00	6.60	0.00	9.73	64.38	46.51	48.30	0.00	16.18	12.24	12.19	6.90	2.51	5.62	3.67	5.97	0.00	6.02	2.05
34	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.02	0.00	0.00	2.72	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	2.32	0.00	0.00	0.00
35	I4	Intron	0	5.34	5.68	2.97	11.46	5.79	9.46	8.72	2.84	8.31	5.99	2.26	4.09	1.31	8.80	26.52	21.79	24.18	9.09	10.81	11.77	4.14	1.50	1.39	13.01	5.50	3.55	0.00	4.93	3.92
36	I4_SR1	SilentIntronRegion	0	4.76	2.87	2.97	7.90	6.05	10.18	7.39	2.72	5.86	4.17	1.97	2.20	0.74	7.02	22.83	15.14	19.31	8.86	7.61	10.80	3.15	1.55	1.12	10.10	4.45	2.83	0.00	4.71	3.66
37	I4_AR1	ActiveIntronRegion	0	6.16	9.54	3.00	16.36	5.46	8.52	10.58	3.00	11.67	8.50	2.67	6.69	2.09	11.27	31.66	30.96	30.93	9.46	15.22	13.15	5.51	1.45	1.77	17.05	6.97	4.54	0.00	5.26	4.31
38	E5_Aa	NovelBoundary	0	11.27	8.92	1.15	0.00	0.00	6.98	21.63	3.98	4.05	19.97	4.08	15.27	3.12	14.38	42.65	49.34	42.70	4.62	8.09	16.13	5.62	0.00	2.27	24.64	8.45	4.38	0.00	8.18	2.84
39	ER5a	ExonRegion	0	120.26	68.34	71.24	296.22	131.81	89.72	346.36	78.28	53.95	81.94	85.24	40.86	219.82	99.49	202.19	120.91	110.62	82.30	237.79	240.20	56.11	78.71	55.34	176.67	117.06	159.95	48.77	104.22	56.37
40	E5_Da	KnownBoundary	0	125.34	99.57	66.87	1152.44	275.44	79.11	514.70	128.79	63.07	110.33	118.85	58.37	358.92	105.29	262.11	137.93	136.95	69.99	444.19	250.74	50.70	93.64	70.92	241.95	155.97	239.68	87.22	193.30	51.53
41	ER5b	ExonRegion	0	121.35	86.15	94.69	517.20	162.13	81.39	392.48	149.63	60.62	85.45	98.89	61.28	303.44	103.36	226.57	137.35	154.29	85.60	300.97	212.59	40.52	108.57	88.89	196.68	134.94	210.88	31.39	131.22	76.63
42	E5_Ab	KnownBoundary	0	136.37	91.52	76.29	309.95	92.70	99.68	365.55	159.65	62.79	69.39	92.88	56.78	212.75	109.61	281.44	137.24	126.10	104.03	291.33	200.46	36.02	142.01	82.00	173.41	128.81	185.30	14.36	131.51	76.59
43	ER5c	ExonRegion	0	151.34	105.98	104.91	286.54	109.73	89.90	359.17	128.54	53.72	81.88	68.40	60.38	249.62	114.50	230.36	125.94	163.68	91.36	260.95	217.98	47.07	128.33	81.99	153.47	125.41	187.73	16.05	136.75	87.31
44	E5_Db	KnownBoundary	0	55.45	45.47	53.99	66.00	42.00	30.50	130.28	49.22	15.99	33.59	5.06	18.82	76.17	34.50	106.64	46.21	61.81	32.24	48.11	54.75	24.07	39.91	25.22	60.53	35.54	73.64	9.44	53.47	39.35
45	E5b_E5c	KnownJunction	0	61.40	31.99	66.82	71.18	28.15	44.51	144.12	47.87	25.03	51.33	28.91	32.44	150.15	60.58	47.24	79.64	105.23	0.00	0.00	132.24	22.82	55.81	37.82	63.05	53.23	100.50	6.86	57.47	47.77
46	E5_Ac	KnownBoundary	0	10.32	17.55	0.00	0.00	0.00	0.00	2.00	0.00	2.13	4.83	0.00	0.00	81.14	22.07	6.98	2.68	28.54	0.00	32.37	2.89	0.00	1.70	0.00	0.00	6.63	65.96	0.00	1.57	4.99
47	ER5d	ExonRegion	0	163.62	87.60	97.99	173.07	117.90	76.52	306.39	111.69	54.68	81.81	57.52	58.96	229.49	105.82	240.83	120.63	155.93	116.44	310.77	232.35	42.79	113.57	75.34	142.69	134.83	175.50	36.63	119.54	92.16
48	ER5e	ExonRegion	0	134.35	107.80	69.44	125.88	84.25	75.14	334.87	126.46	101.64	84.23	78.47	67.72	279.11	111.93	268.99	130.20	158.11	107.44	290.27	246.30	42.71	93.13	77.12	187.11	149.29	199.25	62.98	148.62	69.62
49	E5_Dc	KnownBoundary	0	131.18	131.85	55.56	227.34	76.93	110.77	521.91	187.97	184.27	107.17	83.58	84.12	365.89	122.42	381.10	193.16	167.56	117.51	468.91	195.50	50.46	120.33	98.89	267.79	178.25	250.92	32.50	234.63	67.12
50	ER5f	ExonRegion	0	155.37	103.91	57.55	150.94	121.69	100.50	357.82	130.54	178.98	69.57	87.73	63.45	313.55	121.69	322.23	166.29	151.41	101.83	387.68	299.84	55.89	119.05	86.78	226.75	147.43	191.77	50.93	140.63	82.29
51	E5_Dd	KnownBoundary	0	100.63	86.48	44.55	156.81	79.14	64.69	180.97	75.94	101.59	51.49	41.35	43.10	135.21	80.56	263.10	94.02	74.84	97.22	388.44	288.87	29.48	79.68	58.31	190.15	80.28	88.57	19.73	61.65	44.01
52	ER5g	ExonRegion	0	99.37	113.88	57.94	146.07	74.72	52.66	179.25	69.77	123.39	57.94	51.27	35.36	188.42	74.03	269.55	81.70	92.00	73.69	308.68	240.13	32.92	73.63	50.91	193.27	99.50	88.21	20.85	74.31	51.31
53	E5_De	KnownBoundary	0	16.10	38.68	7.72	0.00	23.58	8.25	15.62	5.32	36.24	0.00	6.86	1.87	48.05	8.91	10.76	16.06	12.16	0.00	89.02	8.93	4.41	2.53	5.42	29.43	18.56	12.75	0.00	0.00	7.92
54	E5e_E5d	KnownJunction	0	107.24	54.49	50.88	278.24	104.04	55.21	249.46	50.71	160.12	57.76	64.03	26.39	72.13	40.68	269.08	68.70	72.64	16.18	0.00	185.16	49.34	99.62	38.61	244.17	123.09	0.00	29.02	119.07	53.18
55	E5_Ad	KnownBoundary	0	48.01	34.03	7.15	81.53	23.87	12.66	99.95	27.27	61.94	19.53	15.31	5.36	124.38	30.89	21.33	24.71	19.58	0.00	8.09	53.42	26.39	55.62	8.13	68.25	38.83	80.85	2.39	39.00	10.89
56	ER5h	ExonRegion	0	25.29	77.52	19.30	40.95	19.93	16.50	57.65	23.93	49.88	13.57	11.66	6.93	239.28	53.33	88.49	29.86	67.12	25.65	250.73	56.21	12.27	20.19	11.93	55.07	30.30	96.81	7.33	25.75	16.37
57	ER5i	ExonRegion	0	57.93	63.68	30.18	156.70	52.96	38.77	134.08	27.62	94.35	38.28	34.10	22.58	138.85	44.38	186.54	72.83	46.35	54.57	229.75	144.87	28.61	35.09	33.84	117.86	66.25	60.46	29.72	62.68	24.70
58	E5_Df	KnownBoundary	0	40.70	40.82	11.49	193.48	95.50	22.14	58.99	4.28	52.93	32.68	6.83	4.34	63.66	11.81	145.70	29.68	10.06	50.99	40.46	68.97	7.18	24.21	7.09	61.49	25.31	14.16	0.00	31.36	6.21
59	ER5j	ExonRegion	0	23.83	22.58	12.01	70.79	41.23	8.38	34.29	2.04	25.28	13.69	12.33	2.08	28.26	10.22	90.44	16.37	9.51	25.81	67.17	53.28	4.08	10.05	5.98	39.00	19.87	11.99	0.99	11.12	3.34
60	IG10_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00