Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	EPHA2	Gene	0	3.78	12.28	27.53	1.76	1.14	12.71	2.27	2.03	7.59	31.97	6.59	14.44	3.85	11.30	3.63	10.56	14.17	16.31	4.42	4.67	10.73	6.54	16.26	85.47	11.87	13.57	5.27	8.25	11.98
2	358432	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.57
3	407976	Transcript	0	3.41	2.33	8.84	0.00	0.00	4.30	0.00	0.00	1.49	9.83	0.36	3.70	1.40	2.91	0.00	2.01	3.31	0.00	0.00	0.00	1.83	2.02	5.69	18.07	4.24	2.02	1.88	4.04	5.02
4	461614	Transcript	0	0.00	0.00	0.00	0.00	0.00	3.91	0.00	0.00	1.43	1.96	1.42	1.39	0.00	0.00	0.00	3.52	1.33	0.00	0.00	0.00	1.76	0.00	0.00	4.96	0.00	4.38	0.00	0.00	0.00
5	480202	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	462805	Transcript	0	0.00	0.00	0.51	0.00	0.00	0.00	0.00	0.00	1.20	0.00	0.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.66	0.00	0.00	0.00	0.00	0.00
7	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13
8	E1_Ac	KnownBoundary	0	0.00	0.00	2.99	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	2.38	0.00	0.00	0.00	0.00	1.40	4.62	0.00	3.14	0.00	0.00	1.97	0.00	1.44	3.26	1.89	1.80	5.81
9	ER1b	ExonRegion	0	0.00	0.00	4.55	0.00	0.00	0.81	0.00	0.00	0.00	3.99	0.07	2.62	0.00	0.05	0.00	0.45	0.53	5.30	0.00	1.32	0.42	0.00	2.77	0.51	1.35	2.03	1.83	0.96	2.61
10	ER1c	ExonRegion	0	0.54	1.90	14.88	0.00	0.00	5.50	1.25	0.00	0.61	17.54	1.92	5.35	1.54	2.69	1.78	5.78	7.93	12.15	2.40	1.82	4.01	1.07	9.01	18.16	3.68	11.13	2.61	4.44	2.86
11	E1a_E2a	KnownJunction	0	0.00	7.66	3.81	0.00	0.00	19.15	2.92	0.00	6.09	25.96	1.30	8.92	3.09	9.15	8.77	10.33	10.69	18.49	0.00	9.68	7.42	2.38	11.72	56.53	17.69	8.41	8.55	6.38	4.46
12	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	3.91	0.00	0.00	1.43	1.96	1.42	1.39	0.00	0.00	0.00	3.52	1.33	0.00	0.00	0.00	1.76	0.00	0.00	4.96	0.00	4.38	0.00	0.00	0.00
13	ER2a	ExonRegion	0	0.95	7.05	5.40	0.00	0.00	9.02	2.19	0.92	1.93	44.84	6.51	15.68	3.04	11.48	6.34	23.22	15.97	15.77	1.33	3.64	6.96	1.14	20.32	51.98	11.77	16.73	9.05	16.13	9.12
14	E2a_E3a	KnownJunction	0	3.01	4.36	6.30	0.00	0.00	7.60	0.00	2.39	0.00	19.21	16.42	16.93	2.61	7.07	0.00	11.17	18.57	4.62	8.09	0.00	2.05	1.99	31.03	55.33	11.82	22.44	16.95	14.78	14.29
15	ER3a	ExonRegion	0	3.75	6.35	26.23	2.73	1.49	12.31	1.53	1.89	3.99	31.28	8.44	12.56	1.86	13.55	3.49	8.07	15.66	16.72	3.03	4.14	10.22	5.29	18.77	56.91	10.41	15.37	6.19	8.94	8.06
16	E3a_E5a	KnownJunction	0	9.02	0.00	35.80	0.00	0.00	30.35	6.81	1.99	4.57	51.45	9.40	11.14	1.53	18.32	0.00	7.42	25.32	32.36	0.00	0.00	19.57	10.36	14.38	83.50	15.80	21.97	0.00	2.25	9.87
17	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER5a	ExonRegion	0	3.74	7.48	32.63	0.00	1.28	17.62	2.80	1.05	5.50	40.09	5.26	15.08	1.90	14.82	1.54	5.68	22.40	18.44	1.04	4.07	14.33	5.45	19.50	60.27	10.85	14.70	0.00	9.07	10.10
20	E5a_E6a	KnownJunction	0	6.02	4.65	31.69	0.00	14.74	17.04	0.00	0.00	5.02	36.35	4.14	18.55	1.40	6.71	7.57	10.71	20.87	23.12	0.00	3.39	14.96	0.00	17.83	52.10	13.41	12.10	0.00	24.80	12.94
21	ER6a	ExonRegion	0	4.56	8.89	21.69	2.20	0.90	14.86	1.76	0.70	6.55	29.34	3.42	11.61	1.90	7.58	2.94	6.88	12.03	16.69	2.26	3.14	8.58	4.98	19.03	57.60	8.66	14.68	1.47	6.37	11.04
22	E6_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00
23	E6a_E7a	KnownJunction	0	2.54	21.91	27.33	0.00	0.00	13.58	2.29	2.54	9.96	32.28	7.75	15.12	3.22	12.65	0.00	9.64	10.04	18.49	16.18	4.13	8.94	4.38	13.20	54.55	8.56	14.46	2.19	12.31	7.46
24	ER7a	ExonRegion	0	1.27	10.51	29.86	3.15	0.00	10.81	1.93	0.48	7.93	25.56	3.09	11.40	4.05	11.60	0.00	10.89	7.71	13.06	6.16	4.22	7.56	4.23	17.19	58.34	8.19	9.48	2.43	8.38	5.73
25	E7_Da	NovelBoundary	0	3.01	0.00	0.95	0.00	0.00	0.00	0.00	0.00	0.00	3.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	5.92	0.00	0.00	0.00	0.00	0.00
26	E7a_E8a	KnownJunction	0	0.00	0.00	39.19	0.00	0.00	10.28	0.00	0.00	4.99	38.71	2.82	16.63	6.37	15.53	0.00	10.56	16.81	13.87	0.00	0.00	12.84	4.67	18.57	61.25	3.83	10.21	4.87	8.40	7.82
27	I7_SR1	SilentIntronRegion	0	0.46	0.00	1.83	0.00	0.00	0.00	0.00	0.00	0.00	0.08	0.00	1.00	0.00	0.00	0.00	0.00	0.26	0.00	0.00	0.00	0.00	0.00	0.00	4.37	0.00	0.42	0.00	0.00	0.00
28	I7_AR2	ActiveIntronRegion	0	1.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.44	0.00	0.12	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	3.79	0.00	1.01	0.00	0.00	0.00
29	E8_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.82	0.97	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	0.00	2.02	0.00
30	ER8a	ExonRegion	0	2.55	7.66	29.36	2.37	0.00	13.38	3.27	1.83	5.87	29.72	6.88	14.20	3.25	16.20	1.53	12.14	14.19	14.67	4.00	4.23	7.94	7.52	21.95	63.60	9.41	15.68	4.98	7.43	11.16
31	E8a_E9a	KnownJunction	0	2.71	12.99	18.46	0.00	5.60	10.90	8.35	0.00	9.11	33.31	6.11	12.05	6.34	19.79	0.00	20.88	14.70	9.25	8.09	0.00	10.63	4.67	25.91	92.77	12.20	15.79	7.06	6.69	6.01
32	ER9a	ExonRegion	0	2.14	9.85	15.29	0.00	0.00	9.62	6.05	0.00	4.49	25.99	5.06	10.98	5.20	19.16	0.00	15.18	16.78	16.03	4.53	1.41	11.05	6.76	22.38	56.74	9.29	9.43	1.83	4.89	5.37
33	ER9b	ExonRegion	0	1.75	16.85	18.31	3.97	0.00	7.13	2.08	2.40	5.87	22.82	2.63	10.43	4.09	15.80	0.00	10.62	11.99	19.19	2.61	1.47	5.09	7.35	14.13	61.68	8.17	6.54	2.39	6.57	7.06
34	E9b_E10a	KnownJunction	0	5.72	22.69	19.98	0.00	0.00	17.34	5.32	2.44	8.77	27.64	4.18	8.67	1.43	17.06	0.00	18.90	7.68	18.49	8.09	0.00	11.27	11.62	18.27	93.01	5.23	15.53	5.07	4.22	12.61
35	ER10a	ExonRegion	0	11.10	10.56	37.37	4.83	0.00	15.71	1.40	1.08	11.05	36.64	3.42	14.64	4.99	20.42	0.60	16.18	13.54	28.66	11.15	4.37	15.23	11.78	24.06	126.53	13.20	13.50	8.70	7.63	14.38
36	E10_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	E10a_E11a	KnownJunction	0	8.49	12.22	51.97	9.49	0.00	22.75	0.00	0.00	12.33	66.75	11.96	23.01	7.80	21.29	0.00	16.98	20.48	42.13	16.18	0.00	14.32	13.61	31.67	206.60	13.68	14.50	21.92	11.19	13.34
38	ER11a	ExonRegion	0	6.34	22.56	44.86	2.11	4.32	17.96	1.93	0.00	14.53	69.72	11.90	18.31	8.86	20.92	4.48	14.12	17.07	31.05	4.43	9.81	12.08	9.53	35.12	170.18	22.08	21.76	10.58	11.01	15.57
39	E11_Ab	KnownBoundary	0	2.95	44.02	37.62	0.00	6.34	10.32	2.29	0.00	25.25	62.75	11.99	14.37	9.65	19.30	0.00	10.17	15.17	24.66	8.09	26.63	10.31	11.62	33.15	149.36	18.64	23.30	2.29	13.43	15.05
40	ER11b	ExonRegion	0	5.42	28.51	37.51	0.00	3.32	11.56	1.05	2.00	14.23	48.13	12.71	15.55	8.39	22.30	3.46	16.65	19.59	19.04	7.04	13.85	18.54	8.68	18.26	143.12	25.23	27.92	10.60	7.71	16.35
41	E11a_E12a	KnownJunction	0	13.86	7.95	32.07	0.00	5.60	20.33	5.49	2.34	7.52	39.87	3.23	5.66	2.96	19.72	0.00	31.44	16.99	42.38	24.28	3.97	22.30	10.06	7.44	118.26	24.97	25.58	18.98	6.69	9.71
42	E11b_E12b	KnownJunction	0	5.96	4.65	17.69	0.00	0.00	8.59	0.00	0.00	2.98	18.22	0.00	7.41	2.80	5.45	0.00	3.52	6.62	0.00	0.00	0.00	3.65	4.04	11.38	33.56	8.49	4.03	1.94	8.09	10.04
43	ER11c	ExonRegion	0	0.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.44	0.71	0.00	0.00	0.36	0.00	0.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.58	0.00	0.00	1.83	0.00	0.00
44	ER12a	ExonRegion	0	13.22	29.02	48.62	0.00	4.98	23.37	4.03	3.68	8.24	46.92	3.37	15.25	7.14	20.26	0.00	32.90	21.70	38.21	18.10	2.81	26.39	12.62	18.38	149.50	30.02	24.88	21.06	10.87	17.67
45	ER12b	ExonRegion	0	7.33	20.52	45.60	0.00	1.39	17.30	1.99	4.32	10.33	50.85	9.73	26.94	9.48	16.97	2.82	18.09	19.74	23.18	9.27	7.97	16.49	7.32	25.99	162.24	21.45	24.24	10.28	12.59	18.81
46	E12_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E12a_E13a	KnownJunction	0	5.43	23.66	38.59	0.00	6.04	21.60	2.92	4.68	13.19	61.72	18.73	32.29	15.86	25.10	0.00	22.41	22.98	34.42	0.00	3.72	26.19	5.93	15.71	212.46	34.82	30.38	19.18	23.63	26.58
48	ER12c	ExonRegion	0	0.00	0.00	0.51	0.00	0.00	0.00	0.00	0.00	1.20	0.00	0.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.66	0.00	0.00	0.00	0.00	0.00
49	ER13a	ExonRegion	0	9.78	17.70	46.11	0.00	0.00	16.92	2.50	3.12	9.19	53.98	6.51	32.30	10.75	19.25	0.00	13.39	22.81	8.85	18.47	5.26	13.23	10.76	20.36	181.70	26.05	28.75	19.05	18.06	19.46
50	E13a_E14a	KnownJunction	0	8.14	9.02	40.41	0.00	0.00	14.08	0.00	2.54	15.80	68.31	1.55	30.03	8.95	15.58	0.00	10.86	21.97	9.25	24.05	9.76	13.12	12.40	17.29	178.25	24.47	26.18	8.25	16.09	7.82
51	ER14a	ExonRegion	0	4.29	8.56	46.27	0.00	1.19	20.77	2.96	2.94	12.02	42.89	12.31	30.80	7.52	13.27	8.19	10.53	21.62	19.56	3.00	9.07	17.63	9.26	21.41	122.16	19.28	20.21	9.86	15.89	17.76
52	E14a_E15a	KnownJunction	0	3.01	22.10	41.18	0.00	0.00	24.25	0.00	0.00	14.25	33.95	1.55	29.07	5.38	8.49	16.14	6.81	26.29	27.74	0.00	24.07	18.73	4.76	13.84	66.69	8.83	5.45	0.00	26.24	21.66
53	ER15a	ExonRegion	0	4.09	17.17	36.06	0.00	0.00	19.54	3.75	1.25	6.15	46.11	7.39	24.02	4.51	13.73	4.44	7.59	22.83	19.40	2.53	7.10	17.23	5.25	24.71	96.08	14.74	14.85	1.58	10.63	25.57
54	E15_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	E15a_E16a	KnownJunction	0	5.90	29.96	44.02	0.00	0.00	25.71	4.86	0.00	2.92	58.12	11.39	28.98	8.09	11.45	0.00	3.82	18.75	27.74	8.09	19.19	23.58	9.43	16.06	168.44	19.32	6.09	2.53	14.60	35.03
56	E16_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.93	0.00	0.00	0.00	0.00	0.00
57	ER16a	ExonRegion	0	4.92	17.05	36.06	0.00	0.00	13.09	2.06	2.29	6.77	38.67	6.44	21.14	2.91	7.42	2.63	7.84	23.56	25.67	2.24	5.94	15.48	12.50	18.58	114.34	17.21	10.46	3.51	9.37	21.59
58	E16a_E17a	KnownJunction	0	2.42	17.94	48.78	0.00	0.00	13.12	5.44	2.24	6.94	43.70	0.00	11.78	0.00	8.15	18.34	10.10	14.50	14.64	0.00	4.13	18.45	9.19	9.06	128.96	15.27	2.06	2.09	2.11	18.03
59	E17_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.95	0.00	0.00	2.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER17a	ExonRegion	0	4.55	12.47	33.01	3.47	0.00	11.46	2.93	1.95	4.93	24.28	5.49	12.35	3.88	7.85	4.42	9.49	15.53	20.40	3.60	5.78	11.23	6.75	12.38	86.91	9.66	7.27	1.53	8.98	8.49
61	E17_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.65	0.00	0.00	0.00	0.00	0.00	0.00	2.87	0.00	0.00	0.00	0.00	0.00
62	E17a_E18a	KnownJunction	0	5.78	18.13	41.36	18.55	0.00	21.87	5.66	6.92	13.22	49.25	15.69	18.13	5.41	9.75	0.00	24.86	12.81	18.49	16.18	4.05	18.69	4.47	13.59	115.74	23.07	13.43	2.14	8.67	6.90
63	I17_SR2	SilentIntronRegion	0	0.00	0.72	0.99	1.60	0.00	0.74	0.15	0.00	0.58	1.35	0.00	0.00	0.00	0.27	0.00	0.74	0.76	0.59	0.00	0.61	0.42	0.00	0.27	4.00	0.00	0.00	0.00	0.00	0.45
64	E18_Aa	NovelBoundary	0	0.00	0.00	1.05	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	1.42	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	3.93	0.00	0.00	11.96	0.00	0.00	0.00	0.00	0.00
65	ER18a	ExonRegion	0	3.75	19.61	25.90	2.80	2.28	12.81	3.26	3.44	12.78	30.90	7.59	12.91	4.80	10.74	6.03	15.08	10.94	14.46	7.05	4.49	11.02	8.56	11.54	117.12	12.69	11.59	6.72	6.97	14.47
66	ER18b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00