Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C1orf128	Gene	0	124.82	204.06	178.55	212.09	98.56	160.46	137.74	103.56	235.21	225.32	216.24	203.63	264.27	166.17	169.99	173.07	188.82	145.17	246.41	155.74	131.05	141.78	157.32	187.84	219.32	216.30	103.71	181.59	150.75
2	246151	Transcript	0	95.51	130.97	174.92	181.93	108.11	120.93	97.88	63.39	91.85	146.66	161.22	178.62	178.12	146.42	87.10	146.89	169.65	152.89	163.94	144.38	98.06	103.08	137.49	134.23	143.37	136.63	89.01	179.39	106.60
3	415372	Transcript	0	13.67	8.50	4.20	11.81	1.41	8.37	5.48	1.57	6.25	8.52	5.31	5.64	1.59	9.74	9.46	13.19	17.19	9.18	7.98	10.54	6.54	1.29	2.34	4.40	6.16	3.06	1.53	6.03	1.20
4	374524	Transcript	0	3.19	0.00	0.02	0.00	0.00	0.01	0.00	0.39	0.24	0.61	0.00	0.40	0.28	0.87	3.13	0.00	0.96	1.64	3.39	2.36	0.00	0.38	0.38	0.00	0.00	0.33	1.04	0.35	0.00
5	ER1a	ExonRegion	0	67.82	42.43	39.78	88.08	75.42	68.84	68.17	43.66	43.86	89.80	51.02	89.22	106.20	76.61	63.38	93.28	102.07	117.70	71.01	94.06	57.62	75.98	90.52	56.61	67.94	122.35	19.25	109.98	73.76
6	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.57	0.00	2.39	0.00	3.64	0.00	0.00	0.00	2.24	0.00	0.00	2.66	0.00	0.00	0.00	1.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E1a_E2b	KnownJunction	1	102.75	113.24	113.89	133.30	63.22	108.85	92.97	45.49	75.00	129.14	194.01	219.12	166.48	165.86	77.34	147.18	204.14	158.48	161.85	127.94	112.31	90.48	197.25	158.93	164.35	145.14	81.21	216.52	100.72
8	E1a_E2c	NovelJunction	0	0.00	4.56	2.74	0.00	0.00	6.71	2.92	5.08	2.86	4.75	6.49	2.89	3.22	6.16	0.00	2.91	6.48	0.00	8.09	10.92	0.00	4.62	4.97	0.00	0.00	1.76	0.00	6.38	1.35
9	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.78	0.00	1.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.06	0.00	0.00	0.00
10	I1	Intron	0	4.27	4.46	1.91	5.11	2.09	4.11	1.44	2.36	2.48	4.11	1.19	1.58	0.46	3.61	4.72	6.26	6.17	4.48	6.83	3.82	1.02	0.52	0.00	1.53	2.85	0.90	0.00	2.32	1.62
11	I1_AR1	ActiveIntronRegion	0	3.65	2.17	1.51	4.99	2.26	3.79	0.93	3.83	2.69	3.01	1.38	0.96	0.00	3.84	3.41	5.18	3.32	4.54	8.00	4.52	0.61	0.43	0.00	0.50	1.52	0.36	0.00	0.90	0.31
12	I1_SR1	SilentIntronRegion	0	5.34	8.24	2.57	5.38	1.83	4.69	2.27	0.01	2.16	5.96	0.89	2.62	1.21	3.29	6.92	8.11	10.86	4.45	5.03	2.71	1.69	0.68	0.00	3.23	5.04	1.77	0.00	4.65	3.77
13	E2_Aa	NovelBoundary	0	2.65	18.61	3.41	0.00	0.00	0.00	10.47	2.24	12.76	10.79	3.23	7.23	3.03	6.58	7.77	6.73	31.36	23.89	0.00	13.65	0.00	0.00	0.00	5.56	3.64	10.56	2.34	2.07	7.92
14	ER2a	ExonRegion	0	15.53	9.53	2.61	18.28	1.64	7.06	8.58	1.41	7.88	9.00	5.18	5.10	2.11	12.13	15.50	19.01	16.30	13.15	10.98	15.53	7.25	1.14	3.35	2.70	8.02	5.08	1.88	8.07	1.51
15	E2_Ab	KnownBoundary	0	5.37	0.00	1.17	27.18	6.63	8.17	4.75	2.54	8.74	13.98	5.41	1.27	0.00	7.53	8.57	29.53	16.79	0.00	16.18	8.27	7.42	0.00	2.12	7.84	6.71	1.85	4.87	2.20	0.00
16	ER2b	ExonRegion	0	122.98	179.60	247.74	222.78	132.76	160.36	120.94	70.86	110.71	180.51	234.73	260.72	216.36	211.45	87.40	212.11	243.49	180.38	228.40	189.88	126.92	123.42	164.93	205.36	220.78	155.26	167.69	240.22	134.06
17	E2_Da	KnownBoundary	0	11.56	7.95	6.43	0.00	0.00	1.80	0.00	0.00	0.00	7.19	0.00	5.90	1.91	5.03	0.00	5.74	11.91	0.00	0.00	11.74	2.05	0.00	0.00	2.81	1.63	0.00	0.00	4.36	0.00
18	E2a_E2c	KnownJunction	0	115.97	237.24	371.08	324.40	185.69	185.09	132.51	101.02	156.68	221.02	238.62	227.53	261.67	196.77	120.59	200.20	202.74	182.50	258.96	211.13	124.26	142.79	124.70	187.16	197.84	142.39	166.59	211.67	145.33
19	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	0.00	0.00	0.00	8.09	3.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER2c	ExonRegion	0	11.81	7.47	5.79	5.35	1.18	9.68	2.37	1.72	4.61	8.05	5.44	6.19	1.07	7.34	3.42	7.37	18.08	5.22	4.97	5.56	5.84	1.44	1.32	6.09	4.30	1.03	1.18	3.99	0.89
21	E2_Ac	KnownBoundary	0	5.84	0.00	8.57	41.84	0.00	1.46	4.86	0.00	9.81	3.08	1.17	4.58	0.00	3.04	0.00	11.02	15.73	13.87	8.09	7.28	0.00	4.38	0.00	2.69	7.08	0.00	0.00	0.00	3.17
22	ER2d	ExonRegion	0	192.86	281.52	473.81	460.79	336.55	317.76	213.07	153.46	266.19	418.34	367.51	256.97	340.07	274.23	134.41	221.62	254.74	220.81	331.68	276.76	234.09	177.35	196.09	340.47	416.88	248.79	151.66	281.30	201.88
23	E2_Db	NovelBoundary	0	5.25	0.00	1.02	0.00	0.00	3.91	5.03	0.00	1.55	3.67	1.61	1.14	1.91	1.13	0.00	0.00	8.01	4.62	0.00	7.69	0.00	0.00	1.87	0.00	3.86	2.15	0.00	4.58	0.00
24	E2b_E4a	KnownJunction	0	126.64	314.99	271.50	271.99	232.85	217.08	165.69	84.00	259.70	366.58	323.31	245.69	338.19	265.33	219.85	253.98	250.75	204.85	461.27	271.67	155.11	102.19	145.04	336.64	281.18	196.63	101.23	191.81	175.83
25	I2	Intron	0	2.69	2.58	1.12	1.47	0.14	2.25	1.59	0.65	2.51	2.95	1.84	1.26	0.51	2.24	2.21	3.29	5.54	3.00	8.03	2.57	3.09	0.16	0.53	3.21	1.76	0.60	0.43	1.28	0.94
26	I2_AR1	ActiveIntronRegion	0	5.35	0.37	2.30	0.83	0.56	2.83	1.86	0.42	1.92	3.49	2.33	0.57	0.90	2.65	3.17	4.41	8.45	2.66	8.46	1.92	3.88	0.42	0.62	4.87	2.85	0.48	1.69	1.77	1.06
27	E3_Aa	NovelBoundary	0	3.01	4.85	1.00	0.00	0.00	3.64	2.12	0.00	2.44	9.67	6.11	1.48	0.00	2.22	15.55	7.04	3.40	0.00	48.55	4.13	3.41	0.00	0.00	3.05	0.00	0.00	0.00	0.00	1.49
28	ER3a	ExonRegion	0	6.38	0.00	0.05	0.00	0.00	0.02	0.00	0.78	0.48	1.23	0.00	0.80	0.55	1.73	6.25	0.00	1.93	3.27	6.79	0.59	0.00	0.77	0.77	0.00	0.00	0.67	0.00	0.69	0.00
29	E3_Da	NovelBoundary	0	2.83	4.17	0.00	0.00	0.00	3.68	7.15	0.00	6.64	7.75	3.07	0.00	1.59	5.07	16.14	6.81	0.00	0.00	24.05	0.00	9.79	0.00	2.17	2.57	4.62	5.19	2.04	6.20	0.00
30	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.13	0.00	0.00	0.00	0.00	0.00	0.00	2.09	0.00	0.00
31	I3	Intron	0	3.35	6.49	0.52	2.24	0.00	4.30	3.78	0.00	4.20	2.71	2.23	1.35	2.02	1.41	1.44	4.44	3.27	4.22	14.99	1.72	2.23	0.00	0.57	2.69	0.00	1.97	0.00	0.00	0.42
32	I3_AR1	ActiveIntronRegion	0	3.37	6.53	0.53	2.26	0.00	4.33	3.81	0.00	4.23	2.73	2.25	1.36	2.04	1.42	1.45	4.47	3.29	4.25	15.09	1.73	2.25	0.00	0.57	2.71	0.00	1.98	0.00	0.00	0.42
33	E4_Aa	NovelBoundary	0	10.91	0.00	1.40	0.00	0.00	1.61	2.80	0.00	7.86	3.83	0.00	1.11	0.00	0.93	24.52	2.98	10.94	32.36	24.28	7.19	5.25	0.00	1.82	16.93	0.00	0.00	0.00	0.00	1.52
34	ER4a	ExonRegion	0	179.56	374.32	229.62	343.42	179.48	295.23	222.23	104.52	334.69	474.82	417.03	319.86	428.58	314.04	188.61	313.62	275.29	276.22	429.52	294.05	212.74	184.26	275.13	380.06	425.83	277.06	116.69	248.95	236.54
35	E4_Da	NovelBoundary	0	4.66	0.00	0.00	21.57	0.00	3.30	0.00	0.00	1.25	3.48	5.19	3.16	1.43	8.29	8.57	11.47	4.86	0.00	0.00	6.29	0.00	0.00	0.00	3.05	1.93	0.00	0.00	2.11	1.65
36	E4a_E5a	KnownJunction	0	203.85	417.66	249.35	251.93	92.25	384.02	294.26	156.46	436.72	439.16	479.61	288.67	371.21	290.21	249.35	353.81	276.98	325.96	557.93	269.60	302.55	200.35	291.41	389.28	420.18	298.94	188.50	201.02	242.81
37	E4a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	0.91	8.37	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.37	0.00	0.00
38	I4	Intron	0	9.21	2.91	2.08	0.00	2.21	4.20	0.91	1.25	2.28	2.45	1.48	1.67	0.15	3.69	7.28	6.02	6.75	6.10	9.39	6.77	2.74	0.82	0.41	4.38	1.13	0.18	0.41	2.58	0.68
39	I4_AR1	ActiveIntronRegion	0	10.49	3.26	1.98	0.00	3.30	3.95	0.68	1.24	2.74	2.44	2.01	1.46	0.22	3.37	4.04	7.12	7.06	6.18	11.87	6.98	2.89	1.22	0.61	5.09	0.72	0.27	0.00	2.75	0.00
40	I4_SR1	SilentIntronRegion	0	6.69	2.23	2.32	0.00	0.00	4.77	1.40	1.28	1.36	2.50	0.41	2.14	0.00	4.39	14.02	3.82	6.21	6.02	4.43	6.41	2.47	0.00	0.00	2.99	1.98	0.00	1.27	2.26	2.09
41	E5_Aa	NovelBoundary	0	5.66	4.56	0.00	0.00	0.00	4.41	5.38	2.29	2.44	3.56	0.00	1.57	4.14	6.16	9.17	2.91	8.60	0.00	0.00	0.00	3.61	0.00	0.00	5.32	0.00	0.00	0.00	0.00	1.55
42	ER5a	ExonRegion	0	192.64	430.02	277.71	293.76	132.79	325.45	218.05	154.62	394.67	431.08	508.25	311.10	408.44	298.82	252.12	348.41	289.31	273.60	558.73	325.38	231.83	214.16	286.19	446.93	470.45	272.78	233.03	262.18	220.72
43	E5_Da	KnownBoundary	0	173.06	390.23	321.18	306.93	154.59	231.51	200.71	109.93	393.45	409.08	489.10	322.46	426.27	258.24	353.99	319.15	291.72	204.20	606.93	259.43	194.54	192.04	265.70	416.26	429.50	354.64	207.98	291.74	232.94
44	ER5b	ExonRegion	0	188.63	426.53	364.03	302.26	111.03	231.65	241.58	161.69	406.69	468.71	464.12	383.38	587.62	282.98	252.77	325.23	310.36	243.93	642.77	317.17	203.34	256.67	271.96	347.96	503.79	518.67	223.77	367.85	317.65
45	E5_Db	NovelBoundary	0	12.09	13.48	0.00	0.00	0.00	5.83	0.00	0.00	0.00	7.03	4.84	3.04	0.00	5.72	7.37	24.25	10.83	18.49	8.09	0.00	7.66	0.00	0.00	6.10	1.67	0.00	2.53	0.00	0.00
46	E5b_E6a	KnownJunction	0	205.74	391.39	380.75	441.31	142.21	232.74	233.09	203.99	420.94	459.13	405.40	407.19	601.70	270.20	206.50	287.18	328.70	294.75	379.90	243.22	171.27	272.84	261.57	273.72	526.49	551.32	193.62	390.50	343.31
47	I5	Intron	0	5.47	9.15	2.65	5.67	1.72	5.32	2.30	0.32	4.97	4.19	1.88	2.17	2.16	5.29	11.09	13.22	9.19	7.74	11.24	5.62	5.89	0.32	0.80	4.73	1.63	1.11	0.32	1.43	1.00
48	I5_SR1	SilentIntronRegion	0	7.12	5.06	3.11	0.00	1.05	2.59	2.25	0.00	2.85	2.60	1.04	1.83	1.50	2.22	11.04	8.37	2.66	5.98	2.74	3.61	2.53	0.00	0.00	3.06	1.88	1.17	1.36	0.70	1.74
49	I5_SR2	SilentIntronRegion	0	4.99	10.28	2.82	6.41	1.40	6.75	2.98	0.55	5.90	5.24	2.43	2.24	2.45	6.70	12.31	16.55	12.26	8.16	17.31	6.17	8.24	0.29	1.35	5.68	1.58	1.17	0.00	1.30	1.00
50	I5_AR1	ActiveIntronRegion	0	5.05	11.17	1.51	11.55	3.72	4.33	0.11	0.00	4.90	2.72	1.15	2.53	2.05	4.81	7.19	8.55	8.05	9.19	2.14	6.57	2.45	0.89	0.00	3.76	1.44	0.84	0.00	2.99	0.00
51	E6_Aa	NovelBoundary	0	15.57	7.95	6.83	9.27	0.00	6.64	2.80	2.34	4.75	1.80	1.36	0.00	6.97	9.57	0.00	13.77	18.37	0.00	8.09	11.50	7.66	0.00	0.00	14.06	11.59	0.00	0.00	4.27	3.30
52	ER6a	ExonRegion	0	193.65	327.65	282.03	333.34	133.19	241.73	217.81	176.43	411.47	336.45	332.81	326.65	429.19	251.07	299.86	260.00	293.60	203.80	384.07	221.77	204.63	231.88	243.66	283.26	330.96	353.26	171.23	281.04	241.87
53	IG40_AR1	ActiveIntergenicRegion	0	0.85	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.45	1.61	0.47	0.49	0.65	0.00	2.19	0.99	0.59	0.00	0.00	1.89	0.00	0.00	0.72	1.71	1.71	0.00	0.00	0.64	0.80
54	IG40_SR1	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00