Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TRIM11	Gene	0	13.44	16.13	20.50	5.78	12.81	15.38	5.95	13.03	10.41	20.13	8.21	12.75	22.14	34.68	18.12	23.79	27.38	29.06	8.00	13.76	16.26	35.25	24.61	19.81	18.14	42.84	8.97	22.82	18.18
2	284551	Transcript	0	5.68	4.71	1.77	6.28	4.75	4.69	3.93	1.57	2.65	5.28	0.60	2.88	2.21	5.07	3.34	16.04	4.35	12.22	1.32	2.61	5.14	16.68	9.41	2.00	3.61	14.78	3.25	6.51	6.23
3	366699	Transcript	0	0.29	0.00	0.63	1.55	0.03	0.18	0.00	0.00	0.00	0.06	0.00	0.06	0.09	0.66	0.21	0.27	0.34	0.30	0.04	0.13	0.23	0.02	0.08	0.18	0.18	0.63	0.13	0.06	0.00
4	493030	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	460651	Transcript	0	0.00	0.41	0.17	0.00	0.00	0.58	0.00	0.00	0.08	0.18	0.51	0.16	0.18	0.65	0.00	1.46	0.56	2.18	0.00	0.70	0.18	0.04	0.13	0.43	0.45	0.77	0.00	0.41	0.01
6	475775	Transcript	0	0.45	0.99	0.15	0.04	0.06	0.38	0.30	0.62	0.31	0.35	0.05	0.22	0.62	0.56	1.26	1.65	1.92	0.41	0.38	0.08	0.46	0.33	0.19	0.10	0.17	0.64	0.40	0.43	0.50
7	IG31_AR2	ActiveIntergenicRegion	0	1.29	1.32	1.01	1.06	0.00	1.87	2.43	2.22	1.44	1.74	0.18	0.19	1.27	1.44	1.39	1.87	5.63	2.33	1.45	1.25	0.86	1.36	0.82	1.95	1.29	4.98	1.38	1.23	2.22
8	ER1a	ExonRegion	0	10.87	6.09	1.61	9.27	8.38	8.75	7.87	0.81	3.12	9.40	0.38	4.34	3.07	7.65	6.15	30.37	6.13	20.90	2.65	2.06	9.29	31.09	16.54	1.78	6.73	25.76	6.30	10.22	10.15
9	E1_Ab	KnownBoundary	0	29.61	15.32	3.11	27.39	48.04	27.47	25.92	1.99	13.67	29.96	1.33	10.45	11.27	22.20	38.87	90.80	14.43	85.28	8.09	17.28	29.28	117.61	36.05	7.12	18.56	88.83	16.60	33.07	35.65
10	ER1b	ExonRegion	0	29.83	7.28	8.34	18.18	42.95	36.86	21.68	7.36	9.20	25.13	2.38	15.64	12.78	37.51	43.29	82.42	25.23	46.84	9.79	7.60	26.91	100.22	37.83	14.65	20.01	114.90	15.89	45.02	49.66
11	E1_Ac	KnownBoundary	0	22.71	0.00	13.68	0.00	13.71	31.04	11.44	9.56	5.69	15.50	1.42	6.93	10.38	38.07	34.68	47.05	31.45	9.25	0.00	2.98	21.58	54.45	20.14	15.49	11.10	101.15	4.97	36.53	39.72
12	ER1c	ExonRegion	0	9.65	1.28	3.45	3.20	3.00	9.54	2.27	3.48	2.53	5.82	1.56	3.82	6.12	12.97	6.30	12.34	13.19	11.92	0.14	5.03	6.41	20.69	6.85	6.82	3.58	26.83	0.97	8.00	10.99
13	E1_Da	KnownBoundary	0	21.29	3.39	5.83	0.00	12.82	10.97	2.46	0.00	3.35	12.06	1.36	3.16	5.80	23.42	15.95	18.44	15.46	51.63	0.00	18.61	9.27	42.83	7.09	16.39	3.11	12.06	4.42	8.94	7.76
14	E1a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER1d	ExonRegion	0	27.77	19.35	25.67	4.76	10.70	22.30	9.84	13.17	9.06	29.57	9.30	18.44	31.76	55.16	22.19	38.08	43.11	61.17	18.74	27.46	21.16	63.02	44.51	29.24	24.05	66.62	11.55	36.73	28.90
16	E1_Db	NovelBoundary	0	2.42	0.00	3.09	0.00	6.19	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	2.24	0.00	0.00	0.00	4.62	0.00	0.00	2.05	0.00	0.00	0.00	1.82	6.39	0.00	0.00	0.00
17	E1b_E2a	KnownJunction	0	46.13	28.21	45.69	9.49	32.72	34.38	10.18	42.20	26.16	54.53	28.57	45.21	69.77	113.82	26.11	49.49	87.16	93.24	40.46	72.86	43.84	140.41	66.09	51.14	66.98	151.66	41.00	86.45	58.24
18	I1	Intron	0	5.13	5.03	1.94	0.40	1.35	4.63	0.48	2.34	1.86	5.08	2.41	1.76	1.14	5.29	2.17	4.41	9.13	5.04	2.65	0.90	3.41	0.30	0.83	3.01	3.19	2.63	1.01	2.34	1.10
19	I1_SR1	SilentIntronRegion	0	3.01	1.99	1.03	0.00	0.00	0.85	0.00	1.09	0.23	1.87	0.22	0.25	0.27	0.70	1.56	0.88	1.84	3.82	0.00	0.00	0.68	0.00	0.00	0.00	0.59	2.21	0.00	0.00	0.28
20	I1_AR1	ActiveIntronRegion	0	5.35	5.33	2.03	0.44	1.48	5.01	0.53	2.46	2.02	5.40	2.63	1.91	1.23	5.75	2.23	4.76	9.85	5.16	2.91	0.99	3.69	0.33	0.92	3.31	3.44	2.68	1.11	2.57	1.18
21	E2_Aa	NovelBoundary	0	2.54	7.37	0.00	0.00	0.00	1.96	0.00	4.58	4.02	5.99	1.20	5.96	0.00	3.94	0.00	16.75	12.61	9.25	0.00	0.00	3.57	0.00	0.00	2.33	3.86	6.57	0.00	1.75	2.74
22	ER2a	ExonRegion	0	52.68	39.52	71.23	15.54	31.99	56.64	21.89	52.07	32.90	93.46	33.36	58.91	98.81	165.15	40.95	63.82	117.92	110.19	23.97	68.20	53.36	146.90	90.58	74.82	78.21	159.23	31.22	111.58	64.74
23	E2_Ab	KnownBoundary	0	49.13	59.43	75.57	28.47	34.93	60.70	30.09	53.35	57.01	98.87	35.27	54.10	101.07	175.01	53.62	78.49	110.90	131.77	24.28	59.96	48.89	139.48	94.95	93.49	81.68	160.76	36.38	119.25	76.56
24	ER2b	ExonRegion	0	39.32	52.25	72.58	19.20	27.24	47.90	32.82	39.76	41.46	62.31	29.53	46.27	79.85	155.90	30.28	77.11	89.65	117.95	29.98	33.38	41.90	117.35	89.90	68.50	66.02	140.27	26.21	88.33	56.50
25	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	1.69	1.09	0.00	0.00	0.00	5.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E2a_E3a	KnownJunction	0	37.46	51.77	57.20	9.49	12.97	39.06	30.09	20.80	32.74	31.40	30.75	45.42	54.58	131.14	9.97	80.40	68.77	74.36	32.37	23.57	40.11	97.67	73.92	46.24	52.36	112.56	26.74	70.27	47.61
27	E2a_E3b	NovelJunction	0	2.48	0.00	2.92	0.00	0.00	3.49	0.00	0.00	0.00	0.00	0.00	3.95	7.96	6.20	0.00	0.00	6.48	4.62	0.00	3.14	1.60	6.71	0.00	0.00	1.44	2.15	0.00	13.08	5.02
28	E2_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	5.89	0.00	2.57	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	1.35
29	E2b_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER2c	ExonRegion	0	0.00	1.64	0.28	0.00	0.00	0.00	0.00	0.00	0.00	0.72	0.00	0.00	0.65	1.36	0.00	1.27	0.00	2.73	0.00	2.81	0.71	0.00	0.45	0.00	1.79	1.57	0.00	1.63	0.00
31	I2	Intron	0	1.60	0.75	0.34	0.00	0.33	4.30	0.00	0.50	1.18	2.85	1.46	0.50	0.97	2.68	1.81	2.15	3.66	2.10	1.52	0.75	0.58	0.61	0.12	1.76	2.24	2.03	0.50	2.44	0.91
32	I2_SR1	SilentIntronRegion	0	1.61	0.76	0.34	0.00	0.33	4.31	0.00	0.50	1.19	2.85	1.46	0.50	0.97	2.68	1.80	2.15	3.67	2.10	1.52	0.75	0.58	0.61	0.12	1.76	2.24	2.04	0.50	2.45	0.91
33	ER3a	ExonRegion	0	32.15	56.66	61.43	7.31	23.66	38.49	29.23	30.84	33.99	41.51	26.78	36.49	62.03	126.31	21.00	79.72	74.13	85.97	36.21	23.19	37.44	121.23	78.21	55.93	56.46	121.41	25.64	70.91	48.99
34	ER3b	ExonRegion	0	41.79	48.74	66.50	14.34	22.93	42.03	15.34	43.37	30.55	60.90	26.27	49.42	73.23	128.50	47.44	82.49	91.09	95.33	27.85	42.72	48.64	119.16	77.72	51.92	60.03	142.19	19.12	74.25	58.17
35	E3_Da	NovelBoundary	0	0.00	7.47	0.97	0.00	0.00	5.64	2.92	0.00	2.56	0.00	3.20	1.51	0.00	4.56	0.00	10.17	13.42	14.64	0.00	0.00	0.00	0.00	0.00	3.05	0.00	3.69	0.00	0.00	0.00
36	E3a_E4b	KnownJunction	0	36.92	29.18	63.03	15.96	12.97	34.61	2.29	37.97	40.29	63.15	27.40	52.56	55.57	103.76	52.42	104.57	55.44	83.99	16.18	37.63	57.52	104.28	78.60	35.53	48.80	134.97	16.90	73.15	58.60
37	E3_Db	NovelBoundary	0	0.00	8.73	1.20	0.00	6.34	8.17	0.00	3.88	2.59	7.43	2.59	0.00	0.00	7.36	0.00	0.00	7.05	9.25	0.00	3.56	0.00	4.04	0.00	8.43	1.67	2.19	0.00	0.00	0.00
38	E3b_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER3c	ExonRegion	0	0.00	0.00	0.40	0.00	0.00	2.31	0.00	0.00	0.31	0.00	2.05	0.64	0.05	1.23	0.00	4.56	2.24	6.00	0.00	0.00	0.00	0.14	0.07	1.72	0.00	1.51	0.00	0.00	0.05
40	I3	Intron	0	2.93	4.22	3.10	0.87	1.43	6.27	0.79	2.34	2.80	6.27	1.31	1.95	1.99	6.53	3.72	3.74	14.42	6.92	1.32	1.10	3.31	0.79	0.62	4.93	3.35	4.98	0.94	3.66	1.76
41	I3_SR1	SilentIntronRegion	0	2.93	4.22	3.10	0.87	1.43	6.27	0.79	2.34	2.81	6.27	1.31	1.96	1.99	6.54	3.72	3.75	14.43	6.93	1.33	1.10	3.31	0.79	0.62	4.94	3.35	4.99	0.94	3.66	1.76
42	E4_Aa	NovelBoundary	0	5.90	0.00	3.99	0.00	22.11	9.36	2.92	2.54	4.54	1.64	1.23	0.00	0.00	9.44	9.97	3.14	12.16	5.39	8.09	0.00	7.30	0.00	0.00	5.92	3.22	4.03	0.00	10.92	0.00
43	ER4a	ExonRegion	0	0.45	0.99	0.15	0.04	0.06	0.38	0.30	0.62	0.31	0.35	0.05	0.22	0.62	0.56	1.26	1.65	1.92	0.41	0.38	0.08	0.46	0.33	0.19	0.10	0.17	0.64	0.40	0.43	0.50
44	E4_Da	NovelBoundary	0	5.25	3.68	1.45	0.00	0.00	1.88	2.92	0.00	0.00	3.75	0.00	0.00	0.00	7.13	8.37	7.34	5.81	0.00	0.00	0.00	3.49	0.00	0.00	2.33	0.00	5.88	0.00	1.89	0.00
45	E4a_E5a	KnownJunction	0	33.33	38.88	61.94	0.00	61.45	56.06	18.02	44.99	31.64	69.11	21.42	36.05	69.74	84.73	82.52	72.75	96.83	80.53	8.09	47.80	49.34	119.99	85.84	62.99	51.79	114.28	36.68	89.28	52.56
46	ER4b	ExonRegion	0	51.83	39.87	82.52	4.99	37.14	53.80	17.04	52.39	38.66	81.64	27.59	54.70	77.41	128.02	76.37	108.94	102.63	92.30	18.10	51.10	59.58	130.94	105.29	53.58	63.48	139.52	33.13	92.02	72.29
47	E5_Aa	NovelBoundary	0	2.30	0.00	1.15	0.00	0.00	3.72	0.00	0.00	3.11	4.07	0.00	1.20	0.00	9.62	9.37	0.00	3.96	9.25	0.00	0.00	0.00	0.00	0.00	2.75	0.00	0.00	0.00	0.00	1.39
48	ER5a	ExonRegion	0	54.24	63.68	92.18	24.76	35.76	56.80	17.56	63.89	35.37	65.78	22.71	44.00	84.45	109.30	68.32	100.88	109.08	108.09	18.19	61.86	59.07	140.92	97.34	73.97	57.31	143.70	30.03	79.97	68.93
49	E5_Da	KnownBoundary	0	2.48	8.05	5.08	0.00	5.89	3.72	0.00	0.00	2.65	3.44	0.00	1.33	1.85	17.77	8.37	3.67	7.32	13.87	8.09	8.02	4.09	2.24	2.27	5.38	8.41	7.21	0.00	0.00	0.00
50	E5a_E6a	KnownJunction	0	58.04	63.99	70.58	75.49	66.02	61.96	4.92	68.68	40.68	61.92	23.54	55.60	111.39	92.88	111.82	61.81	118.89	98.89	8.09	62.52	44.68	141.91	84.56	66.16	45.08	128.48	38.47	83.57	89.73
51	ER5b	ExonRegion	0	0.29	0.00	0.63	1.55	0.03	0.18	0.00	0.00	0.00	0.06	0.00	0.06	0.09	0.66	0.21	0.27	0.34	0.30	0.04	0.13	0.23	0.02	0.08	0.18	0.18	0.63	0.13	0.06	0.00
52	E5_Db	NovelBoundary	0	16.22	9.70	8.52	0.00	0.00	6.33	5.26	0.00	7.46	1.68	3.01	1.66	0.00	35.18	16.14	7.27	9.59	4.62	0.00	6.53	19.01	4.33	10.98	13.58	12.20	3.73	0.00	3.82	3.14
53	I5	Intron	0	9.86	4.59	8.33	11.00	1.87	8.43	1.55	1.76	4.30	6.10	2.28	3.07	6.59	55.18	20.63	4.28	12.02	12.44	6.74	1.97	12.03	8.64	5.55	17.32	13.43	25.61	10.89	7.50	5.64
54	I5_AR1	ActiveIntronRegion	0	9.90	4.61	8.36	11.04	1.88	8.47	1.55	1.77	4.32	6.12	2.29	3.09	6.61	55.39	20.71	4.30	12.06	12.48	6.76	1.97	12.08	8.67	5.57	17.39	13.48	25.71	10.93	7.53	5.66
55	E6_Aa	NovelBoundary	0	5.84	4.85	1.37	0.00	0.00	6.94	0.00	2.54	2.83	2.04	0.00	1.87	3.41	40.57	9.97	6.88	21.07	18.49	8.09	0.00	7.82	14.49	2.51	11.13	0.00	25.06	2.14	10.69	8.06
56	ER6a	ExonRegion	0	56.11	58.18	67.82	38.68	68.63	51.63	12.45	43.57	27.24	69.40	24.28	47.94	98.21	118.16	111.64	77.27	101.26	104.68	25.65	59.65	34.04	123.11	81.45	69.27	51.71	115.01	33.46	61.04	69.08
57	E6_Da	KnownBoundary	0	54.68	46.25	85.28	19.41	68.23	50.26	22.31	41.26	25.25	102.50	12.50	47.02	82.19	155.07	93.28	76.58	99.40	139.99	40.46	56.24	45.12	127.33	84.41	73.51	64.59	145.14	36.58	83.84	57.51
58	ER6b	ExonRegion	0	50.21	68.58	93.16	18.64	73.47	58.93	25.74	55.46	41.28	76.85	39.51	46.81	84.27	135.64	92.05	86.41	95.94	105.54	26.71	48.85	54.50	115.53	94.39	71.78	66.87	160.12	40.56	97.37	64.13
59	E6_Ab	KnownBoundary	0	60.05	144.55	99.39	35.16	82.53	92.96	58.19	92.42	83.87	188.86	84.15	94.67	158.78	202.95	115.61	157.43	185.48	223.21	64.74	55.66	84.83	200.01	154.79	123.58	127.64	319.58	69.13	183.32	120.20
60	ER6c	ExonRegion	0	22.94	44.48	47.38	12.12	39.38	39.53	13.96	31.49	32.76	51.33	22.29	27.36	52.11	70.69	43.79	47.81	61.15	52.39	18.23	24.79	49.20	72.01	51.77	55.98	50.01	99.71	26.15	46.05	40.98
61	E6_Db	KnownBoundary	0	2.83	4.75	5.38	0.00	0.00	3.57	0.00	2.39	23.81	9.91	6.83	2.98	4.81	15.53	0.00	3.44	5.74	0.00	0.00	7.86	1.93	6.95	6.94	14.36	10.04	5.71	17.99	10.11	7.56
62	ER6d	ExonRegion	0	0.00	0.00	0.19	0.00	0.00	0.00	0.00	0.28	0.10	0.44	0.00	0.00	0.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	E6_Dc	KnownBoundary	0	8.73	0.00	1.02	0.00	5.75	0.00	0.00	1.89	13.00	13.90	13.32	1.20	1.97	8.55	0.00	0.00	7.47	0.00	0.00	0.00	3.85	18.18	4.38	10.41	3.37	13.48	4.42	14.96	2.91
64	ER6e	ExonRegion	0	0.49	3.33	1.92	3.29	1.12	0.63	0.00	2.33	2.18	1.16	0.82	1.41	1.34	2.49	0.53	1.71	2.57	3.54	0.00	3.17	0.98	2.28	2.28	2.22	0.49	3.79	0.21	2.81	2.31