Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C1orf220	Gene	0	59.74	25.32	19.02	57.56	9.78	7.93	11.44	10.08	12.45	22.29	4.70	13.70	4.08	143.67	54.45	24.17	73.50	56.54	65.82	30.04	7.00	6.29	4.25	11.19	26.48	28.28	2.86	72.44	7.35
2	367638	Transcript	0	20.70	7.27	5.31	47.57	6.55	2.10	5.38	3.56	1.57	3.80	0.15	1.90	2.80	46.48	22.27	7.89	12.45	21.35	22.37	13.45	1.80	1.65	1.26	5.26	8.37	14.10	2.53	23.43	2.45
3	319387	Transcript	0	46.20	14.11	12.53	55.14	7.96	4.53	9.66	8.68	10.51	12.47	2.76	10.05	2.60	108.41	46.27	14.08	49.16	42.35	64.33	24.84	3.69	4.28	2.29	7.84	19.31	28.07	1.55	56.80	4.46
4	367636	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	14.62	0.00	5.49	66.63	5.65	2.66	2.46	0.70	1.97	2.82	0.00	1.46	1.96	7.92	13.32	2.59	1.98	13.77	13.18	5.37	2.63	0.32	0.40	0.86	2.95	2.69	0.41	12.13	1.31
6	E1_Ab	KnownBoundary	0	26.13	0.00	6.95	136.53	14.30	3.03	5.03	2.34	6.27	5.23	0.00	1.78	3.53	15.04	32.89	3.06	9.45	29.28	0.00	15.71	6.66	0.00	1.97	2.87	5.30	8.33	1.99	19.95	3.83
7	ER1b	ExonRegion	0	28.61	14.47	34.27	302.94	13.94	3.40	41.90	7.10	12.83	14.96	8.18	7.00	4.95	46.81	39.58	14.25	15.21	60.23	101.35	20.21	7.66	2.94	6.99	6.96	17.59	41.85	2.94	42.78	3.56
8	E1_Da	NovelBoundary	0	15.45	4.27	4.96	0.00	0.00	0.00	2.40	0.00	1.49	0.00	0.00	1.36	0.00	27.12	8.17	9.79	11.23	0.00	8.09	3.72	0.00	0.00	0.00	2.81	4.74	1.80	0.00	24.80	0.00
9	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.57	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	3.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E1a_E3a	KnownJunction	0	10.15	0.00	0.00	8.63	0.00	0.00	0.00	0.00	0.00	1.48	0.00	0.00	0.00	6.00	0.00	0.00	5.51	0.00	0.00	4.13	0.00	0.00	0.00	0.00	1.70	0.00	0.00	3.91	0.00
11	E1a_E4a	NovelJunction	0	11.03	0.00	106.41	28.90	0.00	0.00	7.67	1.89	1.55	5.31	0.00	21.96	2.74	27.67	0.00	0.00	9.50	0.00	8.09	19.19	1.64	1.94	2.12	0.00	1.52	10.81	0.00	6.25	0.00
12	Ix	Intron	0	48.97	13.58	15.17	19.34	8.91	5.26	4.85	5.37	5.58	14.31	2.08	8.62	2.66	114.06	35.20	16.53	37.90	52.95	37.01	19.69	6.18	3.03	3.76	7.52	16.25	16.95	1.00	42.40	4.22
13	Ix_AR1	ActiveIntronRegion	0	14.18	0.00	0.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.34	0.00	0.00	0.81	5.46	0.00	0.76	0.00	0.62	0.00	0.00	0.88	3.20	0.00	4.51	0.57
14	Ix_SR1	SilentIntronRegion	0	49.70	13.86	15.46	19.73	9.09	5.37	4.95	5.47	5.69	14.60	2.12	8.79	2.72	116.23	35.91	16.86	38.66	53.93	37.76	20.08	6.31	3.08	3.83	7.68	16.56	17.23	1.02	43.18	4.30
15	E2_Aa	NovelBoundary	0	59.28	22.01	17.12	106.12	27.41	5.06	29.92	19.56	8.86	22.89	8.79	18.79	1.31	252.19	78.13	20.27	66.58	90.03	89.02	44.16	9.19	16.72	12.80	19.14	36.07	28.62	0.00	103.88	4.65
16	ER2a	ExonRegion	0	47.48	21.81	10.43	76.08	13.99	3.66	11.11	9.99	2.75	8.57	0.46	4.24	6.44	130.38	53.50	17.55	35.36	50.29	53.92	34.98	2.76	4.64	3.39	14.92	22.17	39.63	7.17	58.16	6.03
17	E2_Ab	KnownBoundary	0	107.65	21.81	21.23	147.10	33.90	3.49	15.05	23.19	8.31	19.57	1.52	11.14	12.71	235.55	82.52	22.03	83.19	80.14	80.92	37.96	5.17	6.08	8.22	32.66	46.98	59.22	5.52	109.68	11.49
18	ER2b	ExonRegion	0	109.58	22.72	25.01	101.35	14.90	7.55	12.15	11.68	8.68	18.94	5.97	10.23	4.26	204.68	71.08	31.41	47.92	89.25	92.04	40.66	7.63	14.46	3.68	12.93	29.82	31.26	0.34	69.45	7.50
19	E2_Da	NovelBoundary	0	64.18	23.37	39.24	37.96	28.15	5.72	24.26	9.51	11.21	22.05	1.52	11.57	3.60	217.36	69.96	16.83	73.04	47.26	32.37	60.20	11.75	2.38	2.31	18.72	49.82	27.34	0.00	86.76	3.37
20	E2a_E3a	KnownJunction	0	2.65	0.00	0.00	10.78	0.00	0.00	0.00	2.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	4.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	Ix	Intron	0	95.04	26.42	18.54	43.72	5.41	12.19	16.20	16.33	13.06	26.81	5.94	8.03	5.22	186.61	88.94	30.18	59.16	81.25	95.63	46.53	13.43	7.49	4.51	11.90	40.40	42.25	6.09	112.06	7.78
22	Ix_SR1	SilentIntronRegion	0	99.51	26.08	21.65	39.55	6.15	9.68	17.84	12.89	14.95	29.26	6.14	9.72	5.00	186.74	94.38	25.40	69.82	81.95	87.80	38.54	13.66	6.41	5.36	12.35	36.58	43.28	4.35	129.16	8.64
23	Ix_AR1	ActiveIntronRegion	0	90.12	27.80	13.75	52.17	4.31	16.87	13.84	22.72	10.21	23.38	5.77	5.37	5.74	191.87	82.17	39.28	42.58	82.49	111.86	61.50	13.45	9.55	3.18	11.49	48.15	41.61	9.27	86.03	6.55
24	E3_Aa	NovelBoundary	0	112.84	17.26	18.61	9.27	29.47	6.87	15.62	16.07	21.16	20.93	6.01	7.95	1.40	243.48	138.53	41.62	67.62	53.17	113.29	44.49	10.03	15.95	2.51	17.59	24.51	28.58	0.00	42.51	4.62
25	ER3a	ExonRegion	0	96.64	18.65	38.71	82.46	17.59	11.19	17.11	21.19	15.68	29.93	5.16	12.18	4.44	209.10	70.36	28.27	81.16	68.10	91.94	47.00	12.20	15.85	7.01	11.71	34.87	42.94	2.63	116.64	6.05
26	E3_Da	KnownBoundary	0	69.19	13.09	21.65	92.75	20.19	0.00	22.43	14.23	7.77	29.52	4.56	22.71	4.81	205.77	37.27	39.17	85.99	0.00	64.51	41.27	2.01	18.18	10.69	14.42	26.29	38.92	0.00	110.67	3.20
27	ER3b	ExonRegion	0	92.83	20.67	21.07	83.36	17.47	4.38	19.38	10.38	7.49	23.18	5.52	21.19	5.56	222.05	76.69	37.56	92.43	59.06	88.65	37.70	5.95	12.69	9.38	6.97	32.28	45.24	0.37	111.26	4.03
28	E3_Db	KnownBoundary	0	90.78	11.44	20.01	86.92	18.42	3.91	23.86	9.41	7.67	14.50	4.65	25.21	9.46	187.62	112.22	19.97	100.57	131.38	0.00	21.83	3.33	4.67	5.02	11.66	25.91	39.22	2.29	130.57	7.76
29	ER3c	ExonRegion	0	99.57	24.80	24.23	62.09	11.15	7.98	16.70	14.96	10.31	24.38	5.40	22.52	4.90	230.47	68.17	25.13	98.17	83.54	99.64	38.68	6.37	11.02	5.76	11.66	39.71	51.10	3.18	122.62	8.95
30	E3_Dc	NovelBoundary	0	34.45	17.45	14.55	9.92	0.00	5.03	2.17	2.49	1.61	25.84	1.52	11.39	7.10	110.85	76.74	17.21	62.76	32.36	24.28	7.11	3.53	4.76	4.53	4.90	15.42	5.79	0.00	44.26	16.18
31	E3c_E4a	KnownJunction	0	30.02	3.78	10.99	112.81	12.97	1.96	14.02	11.79	18.24	1.76	1.20	5.00	1.75	79.08	67.57	7.50	19.49	37.76	105.20	30.43	1.68	2.38	0.00	8.25	12.62	40.98	0.00	42.82	1.25
32	Ix	Intron	0	21.43	12.92	9.55	4.61	2.09	4.52	1.58	3.29	4.40	14.95	2.13	4.89	2.41	69.81	24.77	10.79	25.59	35.50	20.08	10.24	3.97	1.42	0.26	3.69	10.51	9.09	0.65	23.40	3.87
33	Ix_AR1	ActiveIntronRegion	0	27.10	16.37	13.31	3.46	2.36	5.47	1.46	4.00	6.20	19.49	3.16	7.35	3.20	94.88	31.72	14.62	37.04	47.16	25.04	10.50	6.02	0.65	0.00	4.15	13.61	11.18	0.66	29.68	5.41
34	Ix_SR1	SilentIntronRegion	0	13.29	7.95	4.13	6.33	1.72	3.16	1.78	2.27	1.80	8.41	0.63	1.32	1.26	33.59	14.77	5.25	9.02	18.68	12.97	9.94	1.01	2.55	0.64	3.04	6.05	6.10	0.65	14.38	1.65
35	ER4a	ExonRegion	0	45.06	27.84	14.88	37.03	7.71	8.18	7.95	7.95	13.48	22.29	4.44	12.68	3.73	118.08	49.35	23.68	73.46	48.10	52.49	26.11	6.71	3.70	3.39	11.46	23.21	20.20	3.02	57.85	7.64