Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ARPC5	Gene	0	3782.51	2241.43	1786.82	3154.51	1614.39	3130.16	5386.52	1966.50	1557.69	1681.95	1842.20	1275.36	1614.16	1267.97	3510.38	1739.66	963.55	988.03	2549.11	2209.26	2263.33	1419.02	780.77	1108.82	1333.46	1457.56	3020.20	577.72	1131.02
2	294742	Transcript	1	786.70	139.25	936.63	1929.63	1435.78	157.36	1960.67	449.18	132.26	469.96	236.85	404.53	490.82	180.42	441.57	407.94	314.49	316.67	195.18	280.01	292.72	477.43	531.40	63.93	200.94	1890.14	569.15	766.60	506.31
3	359856	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	367534	Transcript	0	7.75	14.92	1.49	26.97	3.03	12.95	9.11	2.84	9.95	3.27	2.99	3.07	0.51	5.03	3.78	7.88	4.46	3.65	9.46	0.44	2.87	2.06	0.47	5.94	3.16	1.80	5.49	2.84	10.87
5	462965	Transcript	0	219.11	360.69	21.67	318.46	132.46	176.13	199.85	83.89	163.53	184.54	132.11	89.85	92.72	118.40	674.61	126.28	85.63	119.00	421.47	233.35	126.89	73.17	54.30	97.87	99.59	90.93	211.63	46.93	74.59
6	IG50	Intergenic	0	12.49	2.09	18.14	44.11	37.18	1.56	8.49	2.38	1.82	5.38	1.35	1.60	4.63	1.47	2.24	4.71	4.35	8.53	1.03	1.34	3.70	2.92	8.49	0.35	1.16	5.34	2.97	2.64	2.60
7	IG50_AR1	ActiveIntergenicRegion	0	15.37	2.57	22.07	54.27	45.75	1.92	10.44	2.93	2.24	6.62	1.66	1.97	5.69	1.80	2.76	5.79	5.35	10.49	1.27	1.65	4.55	3.59	10.45	0.43	1.42	6.58	3.65	3.25	3.20
8	ER1a	ExonRegion	0	1571.03	278.50	1870.84	3859.25	2871.55	311.11	3918.43	896.32	264.52	937.96	473.70	807.53	981.65	360.83	883.15	812.21	628.99	633.34	390.35	560.03	585.44	950.10	1062.80	127.86	400.21	3774.66	1138.30	1533.20	1012.63
9	ER1b	ExonRegion	1	6721.06	1319.94	8508.72	12124.88	7223.36	5377.03	24223.26	4598.27	2991.55	5140.98	1672.99	3002.85	3729.38	1542.87	4183.91	4907.14	2295.11	2719.12	1863.41	2717.73	3841.06	3377.56	3545.01	574.26	2305.19	15485.77	3396.08	5681.65	4704.92
10	E1_Ac	KnownBoundary	1	10819.17	2060.10	12318.73	9859.72	5531.59	13989.43	20410.00	7534.95	5761.43	5184.02	1477.18	3077.47	3628.47	1864.43	5090.62	7393.37	3154.72	3731.54	2402.34	2941.69	7698.02	4445.28	2852.89	783.04	3204.18	13118.56	3148.68	3768.27	5337.26
11	ER1c	ExonRegion	0	6551.93	1167.76	3503.66	1987.98	963.94	3572.32	5078.21	4783.82	1758.40	1474.68	675.02	1160.05	1529.73	1233.90	1763.68	1981.42	1190.25	1134.94	1034.69	1946.72	2247.24	3651.66	908.65	635.57	1387.68	3181.98	995.82	826.38	1653.89
12	E1_Da	NovelBoundary	0	32.15	0.00	1.30	0.00	0.00	21.06	24.32	9.21	13.00	6.99	1.55	6.48	1.94	9.99	8.17	10.40	13.26	19.14	0.00	6.45	17.13	0.00	2.36	2.93	8.64	10.04	0.00	1.89	10.66
13	E1a_E2b	KnownJunction	0	2.36	0.00	2.42	0.00	0.00	3.61	2.92	2.04	0.00	1.96	0.00	1.54	0.00	0.00	0.00	3.67	0.00	0.00	0.00	0.00	0.00	4.76	0.00	0.00	1.67	5.62	0.00	0.00	0.00
14	E1a_E2c	KnownJunction	0	12393.85	2598.95	1561.17	1453.98	583.30	10324.98	24323.26	10145.22	5592.85	5890.13	1540.32	2707.27	4306.53	2365.22	4765.13	5191.59	2796.01	2478.70	2658.60	3464.76	6621.22	6131.62	3233.29	1147.62	3152.31	11403.28	1329.01	3288.58	4301.26
15	I1	Intron	0	29.04	16.69	9.79	11.18	7.11	18.00	12.15	3.95	12.17	8.65	4.08	5.58	2.96	10.46	19.34	16.80	14.74	10.22	14.39	10.17	14.19	1.44	1.00	4.25	4.26	2.50	5.33	1.64	2.83
16	I1_AR1	ActiveIntronRegion	0	25.92	13.98	12.38	5.19	5.11	10.87	6.39	2.57	8.62	7.53	1.79	2.97	2.77	8.23	16.28	9.81	9.99	8.69	9.89	6.94	7.64	1.31	1.21	2.60	3.07	2.49	3.63	1.29	2.62
17	I1_SR1	SilentIntronRegion	1	33.60	33.80	7.25	14.86	9.16	20.68	13.39	0.53	16.68	11.80	6.35	5.37	3.10	10.46	32.16	26.99	25.11	10.51	27.93	12.48	17.06	1.98	0.00	6.22	3.27	2.40	5.83	2.96	1.65
18	I1_AR2	ActiveIntronRegion	0	26.26	16.84	13.46	7.31	8.72	13.92	23.18	3.68	25.84	7.76	3.57	7.58	1.95	8.84	20.30	32.27	22.66	5.46	15.84	34.78	14.98	0.90	0.00	4.30	5.36	4.71	7.33	4.89	1.34
19	I1_AR3	ActiveIntronRegion	0	24.19	16.89	11.92	1.74	0.47	12.31	24.09	5.26	24.29	4.26	2.49	10.07	3.46	9.20	10.93	22.78	27.24	6.11	25.22	24.36	11.28	1.80	0.00	4.10	1.84	7.63	6.45	4.27	2.68
20	I1_SR2	SilentIntronRegion	0	26.79	16.01	14.03	0.00	4.98	17.53	22.17	6.67	19.94	10.65	1.93	10.05	5.20	10.77	5.60	24.04	25.42	8.19	27.15	12.65	11.59	3.15	0.90	5.65	1.43	4.91	19.46	0.82	3.86
21	I1_AR4	ActiveIntronRegion	0	35.98	19.27	6.15	18.83	11.14	32.42	22.17	7.04	17.76	11.25	7.46	10.57	3.15	15.46	23.64	27.95	21.67	13.06	19.72	15.43	24.97	1.66	0.79	6.68	7.07	2.39	8.30	2.02	3.63
22	I1_SR3	SilentIntronRegion	0	17.78	9.51	2.38	39.97	4.98	11.07	10.67	5.40	6.84	1.94	9.27	3.41	3.85	5.99	15.93	12.26	7.70	13.32	11.94	4.60	24.40	0.47	1.81	6.56	3.01	1.38	4.17	0.42	1.80
23	E2_Aa	NovelBoundary	0	58.81	4.46	20.98	21.57	0.00	18.26	24.09	9.01	14.83	14.38	13.89	15.33	0.00	10.50	7.18	26.77	19.22	19.01	0.00	26.22	14.60	4.23	2.51	2.21	10.80	0.00	10.88	2.25	2.05
24	ER2a	ExonRegion	0	34.04	22.26	13.05	18.83	12.37	32.08	20.57	6.72	19.80	12.09	8.82	6.74	5.55	18.49	18.47	28.54	25.53	10.65	15.90	8.68	18.79	1.33	0.82	6.91	7.52	3.23	6.30	1.80	4.58
25	E2_Ab	KnownBoundary	0	19.82	4.85	10.02	0.00	0.00	7.98	10.58	0.00	12.09	2.04	3.23	4.79	1.62	2.30	7.57	6.27	14.09	4.62	8.09	3.72	12.15	0.00	0.00	12.74	3.56	0.00	0.00	0.00	1.68
26	E2_Ac	KnownBoundary	0	51.79	21.43	44.62	0.00	20.19	54.56	24.83	11.99	20.37	25.41	2.40	10.48	10.09	15.47	19.93	49.19	37.48	4.62	0.00	3.23	26.71	1.94	2.07	5.26	7.88	6.78	10.34	9.12	9.38
27	ER2b	ExonRegion	0	1585.93	355.50	215.44	187.69	90.77	1423.70	3190.48	1273.62	569.87	740.33	222.95	307.98	487.13	295.29	596.78	857.92	290.83	287.78	278.59	460.33	850.92	796.81	426.75	151.30	457.23	1832.70	204.32	546.61	510.92
28	ER2c	ExonRegion	1	10290.91	2528.56	2650.55	1822.78	1056.85	8381.27	20485.48	7882.74	3300.76	4875.14	2587.82	2950.88	3703.72	2358.03	4891.98	5321.95	2290.11	2837.01	2778.36	3353.76	4838.06	4980.77	3277.02	1184.15	3234.60	12376.93	3434.81	4194.43	4518.68
29	E2_Da	NovelBoundary	0	8.02	9.70	5.71	0.00	0.00	5.41	8.30	4.28	4.51	0.00	1.20	6.05	0.00	7.36	0.00	11.47	14.59	18.49	0.00	12.40	5.58	0.00	0.00	5.32	0.00	2.19	0.00	0.00	0.00
30	E2a_E3a	KnownJunction	1	5380.83	1731.63	4011.67	2383.83	1738.10	2092.84	5388.60	2681.39	850.75	1808.14	2430.42	2334.48	1929.64	1903.67	2857.64	1769.49	1686.21	1315.51	2021.54	2267.45	1486.25	2033.91	1732.01	955.91	1523.44	3569.81	4766.64	1926.35	2165.85
31	E2a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	I2	Intron	0	11.24	8.31	2.66	3.06	0.95	11.59	4.15	0.79	3.48	5.22	1.62	2.49	0.35	4.93	7.93	10.59	5.51	10.80	7.94	5.93	9.70	0.14	0.70	2.51	2.89	0.79	2.35	0.82	0.70
33	I2_AR1	ActiveIntronRegion	0	11.26	8.32	2.67	3.07	0.95	11.60	4.16	0.79	3.49	5.22	1.62	2.49	0.35	4.94	7.94	10.61	5.52	10.82	7.95	5.94	9.71	0.14	0.70	2.51	2.89	0.79	2.35	0.82	0.70
34	E3_Aa	NovelBoundary	0	12.68	26.08	17.91	10.35	0.00	15.16	20.31	4.93	5.94	16.50	10.41	2.71	0.00	13.49	0.00	26.16	7.07	13.87	8.09	8.27	9.67	0.00	2.46	18.00	7.96	4.12	2.14	10.11	5.08
35	ER3a	ExonRegion	0	9131.82	2927.74	8249.99	7645.53	4632.42	3185.54	6701.39	5279.99	1327.18	2519.55	2974.95	2216.84	2478.77	2625.53	3457.13	2291.84	1652.37	1585.06	3032.89	3635.18	2608.61	3486.05	1587.71	1617.89	2850.81	2354.00	4411.43	1034.51	1727.30
36	E3_Da	NovelBoundary	0	19.58	30.93	3.76	0.00	0.00	8.59	0.00	8.06	6.00	15.18	4.21	10.00	3.18	15.18	32.09	18.36	24.51	27.74	0.00	3.23	5.13	2.48	0.00	5.32	3.49	16.74	0.00	0.00	0.00
37	E3a_E4a	KnownJunction	0	9453.83	2982.58	2905.40	6831.19	2208.80	3023.37	6733.61	5984.65	1623.58	2231.68	3043.59	2292.31	2498.00	3020.76	4399.18	2756.25	1555.17	1674.34	3122.12	4225.27	2569.71	3707.95	1598.25	1604.97	2983.61	2224.46	3675.53	736.16	1462.37
38	E3a_E5a	KnownJunction	0	2.30	13.48	0.00	38.18	0.00	15.39	10.18	0.00	2.31	0.00	0.00	2.47	0.00	1.99	0.00	3.60	0.00	0.00	8.09	0.00	0.00	0.00	0.00	3.05	1.70	0.00	0.00	0.00	13.24
39	I3	Intron	0	13.14	13.32	1.73	2.26	1.54	15.30	5.99	1.24	5.41	6.24	1.98	3.92	1.02	6.47	8.53	13.02	10.16	13.32	12.38	4.69	9.96	1.14	0.08	4.36	2.45	0.92	2.64	1.10	0.99
40	I3_AR1	ActiveIntronRegion	1	19.71	13.34	3.35	0.00	1.86	10.17	7.58	2.10	4.06	5.34	4.17	6.62	0.56	13.84	3.51	15.11	18.90	17.01	15.91	0.92	12.78	2.06	0.00	4.24	3.04	0.12	1.72	1.80	1.27
41	I3_SR1	SilentIntronRegion	0	12.18	12.93	1.70	2.06	1.40	17.02	6.03	1.06	6.15	5.99	1.70	3.39	1.21	5.46	8.66	12.32	9.58	12.65	12.64	5.09	9.87	1.14	0.10	4.30	2.25	0.98	2.58	0.57	0.50
42	I3_AR2	ActiveIntronRegion	0	13.16	16.73	0.00	6.77	2.31	7.79	3.81	1.74	1.06	9.54	1.69	4.96	0.00	5.78	13.90	16.40	4.23	14.56	6.03	6.12	7.41	0.00	0.00	5.04	3.37	1.48	4.32	4.62	4.73
43	E4_Aa	NovelBoundary	0	23.48	9.60	4.09	9.71	0.00	10.40	5.32	0.00	10.17	5.91	9.05	5.60	0.00	16.22	19.93	28.99	25.35	0.00	8.09	0.00	5.70	2.48	0.00	16.99	5.00	0.00	5.07	0.00	0.00
44	ER4a	ExonRegion	0	5619.26	4120.03	2125.38	5390.38	2583.95	5615.14	8782.20	2500.60	2659.54	2734.09	3541.61	2207.86	2719.15	2118.14	6449.87	2905.62	1581.09	1617.38	4939.95	3962.68	4142.13	1807.62	1122.78	2056.06	2185.41	1245.16	5959.73	583.00	1663.22
45	E4_Da	KnownBoundary	0	7480.30	6266.88	929.33	6839.38	4057.43	6182.51	9167.53	2661.33	6808.08	3446.26	3242.77	1963.52	3819.57	2323.87	13253.96	3329.68	1568.33	2051.42	6475.77	5326.65	4290.41	2742.60	835.52	3507.22	2893.97	1340.17	5863.21	689.56	2416.89
46	ER4b	ExonRegion	0	3112.10	3401.83	380.50	2165.46	1097.45	2689.44	3737.13	1325.54	2332.52	1867.19	1618.60	928.05	1768.28	1368.26	5534.85	1448.27	811.34	823.72	3080.04	2242.03	1911.93	1216.33	519.20	1498.64	1198.09	643.96	2453.91	346.50	972.72
47	E4_Db	NovelBoundary	0	1232.97	2210.66	69.59	2379.30	1049.73	1099.92	1499.49	505.22	1017.45	1068.18	678.18	462.94	514.16	559.76	4070.31	754.20	409.56	572.93	1930.50	1313.92	627.85	425.40	316.77	558.56	517.09	469.14	1128.13	249.55	415.80
48	E4_Dc	NovelBoundary	0	3.01	23.07	0.00	8.84	58.65	19.68	5.03	2.09	9.99	3.83	0.00	4.58	0.00	10.75	25.31	3.82	8.71	13.87	32.37	7.69	11.63	0.00	2.31	5.98	0.00	1.97	4.77	1.80	1.68
49	ER4c	ExonRegion	1	404.18	699.11	30.30	618.08	252.54	320.18	379.14	161.05	307.26	356.99	255.41	172.95	179.89	218.32	1330.75	224.02	145.73	227.35	827.05	458.02	234.98	145.00	107.79	188.83	191.65	178.62	416.95	92.06	144.60
50	I4	Intron	0	9.02	14.88	2.25	5.83	18.08	18.05	5.83	2.58	15.21	6.64	3.67	6.83	0.36	9.73	2.71	15.03	6.91	4.42	12.46	2.44	8.56	1.37	1.72	15.51	2.69	1.98	9.76	3.43	3.36
51	I4_AR1	ActiveIntronRegion	0	2.14	0.00	0.00	0.00	0.00	5.64	0.00	0.00	0.79	0.00	0.00	0.62	0.00	1.09	2.24	1.01	0.50	3.00	0.45	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.55	0.00	0.00
52	I4_SR1	SilentIntronRegion	0	7.41	6.50	0.28	0.00	7.26	20.42	1.39	0.00	3.07	3.31	2.65	4.59	0.00	5.95	4.43	7.43	6.34	5.23	14.14	0.00	4.43	1.54	1.36	2.78	1.37	0.49	15.00	0.61	2.96
53	I4_AR2	ActiveIntronRegion	0	12.85	16.57	3.48	9.27	21.86	20.83	4.01	3.21	9.68	6.55	2.05	10.11	0.30	14.55	4.99	18.19	10.58	4.90	14.14	0.63	12.32	2.52	2.33	10.05	3.86	2.19	11.84	5.62	4.24
54	I4_SR2	SilentIntronRegion	0	7.03	13.38	1.29	9.52	10.82	11.12	5.08	3.75	8.78	4.41	0.37	4.07	0.12	7.51	3.70	12.00	5.00	3.69	11.78	3.46	7.29	0.62	1.56	6.60	1.91	1.29	6.22	0.98	2.21
55	I4_AR3	ActiveIntronRegion	0	8.01	17.71	1.13	4.04	21.18	19.51	4.75	1.18	15.61	7.13	6.70	7.67	0.21	9.65	1.48	15.36	6.54	3.79	13.36	2.70	8.29	0.87	1.45	17.63	1.57	1.94	11.13	3.41	2.25
56	I4_SR3	SilentIntronRegion	0	9.29	12.22	3.67	4.38	17.44	18.56	9.37	3.57	23.62	7.87	3.03	5.61	0.79	8.54	2.06	15.41	6.31	5.30	10.73	3.01	7.81	1.66	1.84	23.24	3.98	2.51	8.48	3.82	4.98
57	E5_Aa	NovelBoundary	1	9.02	18.03	5.26	27.39	6.63	12.32	0.00	2.39	29.17	1.72	1.61	7.53	0.00	6.58	0.00	17.29	7.32	23.12	8.09	0.00	5.82	0.00	0.00	25.00	9.32	8.67	26.34	15.05	6.47
58	ER5a	ExonRegion	0	13.19	16.36	2.97	15.76	6.07	10.52	8.03	5.68	17.59	6.54	5.99	3.67	1.03	8.08	7.56	12.17	8.92	7.30	10.83	0.87	5.74	4.11	0.94	8.83	4.61	3.59	10.99	5.69	8.50
59	IG49_AR5	ActiveIntergenicRegion	0	3.39	7.18	2.95	4.00	2.27	3.19	2.43	1.54	8.02	2.95	5.64	4.70	0.90	5.60	6.22	7.64	11.09	1.61	3.26	0.51	5.03	2.18	1.68	5.40	5.44	4.82	15.48	5.75	2.54