Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	LHX4	Gene	0	7.66	3.08	4.20	5.08	1.20	3.30	1.48	2.06	3.46	3.11	1.36	3.26	0.65	7.93	7.45	4.12	7.90	4.65	5.66	2.66	3.23	0.88	0.30	2.52	3.00	1.97	1.75	5.56	1.42
2	263726	Transcript	0	2.01	0.60	1.04	1.15	0.23	1.01	0.46	0.64	1.01	0.61	0.27	1.06	0.18	2.55	2.32	1.13	1.96	1.49	1.78	0.70	0.80	0.25	0.06	0.73	0.71	0.62	0.98	1.38	0.70
3	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.90	1.87	0.00	0.00	0.00	2.06	0.00	0.26	0.00	0.00	0.00	0.00	0.00	1.25	0.28	0.34
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.04	0.00	1.76	0.00	0.00	0.00	0.00	0.87	0.00	0.39	0.00	0.00	0.00	0.00	0.47	0.95	0.48	0.59
6	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.19	0.00	0.00
7	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.56	0.00	0.00	0.57	0.00	0.82	0.00	0.00	0.00	0.48	0.94	0.00	0.00	0.00	0.00	0.00	0.00	0.39	0.56	0.41	0.00
8	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E4_Aa	NovelBoundary	0	31.44	8.92	13.70	9.27	7.37	10.17	5.84	10.15	17.33	7.07	0.00	10.18	2.87	25.97	58.80	24.63	68.65	13.87	24.28	3.89	9.15	1.80	2.17	8.25	14.89	0.00	0.00	24.49	8.91
10	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.42	0.00	0.00	0.38	0.00	0.00	0.80	0.00	0.30	0.00	0.00	0.00	0.63	0.15	0.00	0.00	0.00	0.00	0.03	0.00	0.00	1.83	0.00	0.00
11	E4_Da	NovelBoundary	0	54.15	7.76	2.27	10.78	0.00	14.46	5.55	2.54	16.66	19.29	3.16	10.12	6.08	21.18	26.11	13.46	36.62	29.28	8.09	7.11	14.52	2.48	4.38	10.65	8.98	5.62	0.00	12.90	9.81
12	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E5_Aa	NovelBoundary	0	24.18	0.00	10.39	31.71	5.75	4.76	0.00	5.03	7.28	5.87	1.20	4.85	4.87	17.15	17.94	9.87	14.95	37.50	0.00	3.39	11.15	1.80	0.00	5.14	8.71	3.86	0.00	12.00	0.00
14	ER5a	ExonRegion	0	6.99	0.00	2.99	2.13	0.00	4.52	2.39	3.28	3.66	0.00	0.00	2.37	0.77	3.13	10.29	4.41	5.64	6.85	5.68	2.45	1.69	1.07	0.00	3.16	1.70	2.33	1.63	2.90	3.05
15	E5_Da	NovelBoundary	0	61.88	13.48	8.40	39.90	0.00	20.22	19.68	25.98	13.70	21.29	1.61	10.93	1.97	17.53	78.53	3.44	28.43	36.99	8.09	0.00	6.14	0.00	2.02	20.76	22.20	16.91	17.59	45.70	6.64
16	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45
17	Ix	Intron	0	28.65	13.62	9.19	33.30	6.02	10.16	5.92	8.73	8.24	7.80	2.14	7.24	1.17	15.66	23.61	9.72	27.03	20.70	15.14	9.11	8.79	3.08	1.54	9.99	10.03	7.75	5.38	17.77	4.19
18	Ix_AR1	ActiveIntronRegion	0	28.70	13.64	9.21	33.36	6.03	10.18	5.93	8.74	8.26	7.82	2.15	7.25	1.17	15.69	23.65	9.74	27.08	20.74	15.17	9.13	8.81	3.08	1.55	10.01	10.05	7.76	5.39	17.80	4.20
19	Ix	Intron	0	21.63	10.62	11.91	21.28	7.26	8.33	2.78	4.10	6.38	7.98	1.90	5.37	2.27	15.14	14.93	10.89	19.20	17.91	17.65	6.49	6.67	1.15	1.34	5.71	11.69	6.01	1.95	11.61	1.00
20	Ix_AR1	ActiveIntronRegion	0	21.67	10.64	11.93	21.33	7.28	8.34	2.79	4.11	6.40	7.99	1.90	5.38	2.28	15.17	14.97	10.92	19.24	17.95	17.69	6.50	6.68	1.15	1.35	5.73	11.71	6.02	1.95	11.63	1.00
21	Ix	Intron	0	16.66	14.62	11.46	18.90	9.65	8.51	4.51	1.70	6.35	10.27	2.82	6.41	1.36	17.46	9.09	12.86	19.48	18.28	14.31	12.35	9.40	0.71	1.91	6.80	10.74	4.14	0.72	13.53	2.47
22	Ix_SR1	SilentIntronRegion	0	16.75	14.69	11.52	18.99	9.70	8.56	4.53	1.71	6.38	10.33	2.84	6.44	1.37	17.55	9.14	12.92	19.57	18.37	14.39	12.41	9.44	0.72	1.92	6.84	10.79	4.16	0.73	13.60	2.48
23	Ix	Intron	0	4.55	0.00	0.00	0.00	0.00	2.94	1.43	2.61	1.59	0.00	0.84	0.88	0.00	3.21	3.27	1.76	0.00	2.73	2.26	1.95	4.04	0.00	0.00	1.52	2.02	1.11	5.19	3.46	0.95
24	Ix_SR1	SilentIntronRegion	0	4.69	0.00	0.00	0.00	0.00	3.02	1.47	2.68	1.62	0.00	0.87	0.90	0.00	3.29	3.36	1.81	0.00	2.81	2.33	2.01	4.12	0.00	0.00	1.57	2.08	1.15	5.34	3.56	0.98
25	E6_Aa	NovelBoundary	0	8.85	0.00	8.52	8.84	0.00	16.54	8.47	0.00	4.11	11.02	2.91	0.00	0.00	11.21	19.53	3.82	9.63	9.25	24.28	0.00	3.21	2.48	2.36	25.06	3.18	2.10	0.00	12.40	0.00
26	ER6a	ExonRegion	0	15.09	6.62	8.44	10.52	2.58	6.13	2.72	3.78	6.51	6.69	2.93	6.26	1.25	15.55	13.34	7.99	15.88	8.42	9.94	5.25	6.45	1.69	0.64	4.80	6.12	3.60	2.36	11.10	2.22
27	IG6	Intergenic	0	11.40	8.50	9.16	35.89	8.40	15.27	6.94	5.47	8.41	8.58	3.91	5.11	1.42	18.90	25.77	19.25	25.69	20.19	13.49	7.33	15.62	2.82	0.57	9.75	10.06	3.69	6.02	15.81	2.09
28	IG6_AR1	ActiveIntergenicRegion	0	11.47	8.56	9.21	36.09	8.46	15.36	6.98	5.51	8.46	8.64	3.93	5.14	1.43	19.02	25.93	19.36	25.84	20.32	13.58	7.37	15.71	2.84	0.57	9.81	10.12	3.71	6.05	15.91	2.10