Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PRRX1	Gene	0	42.70	180.49	38.35	7.29	43.74	101.12	35.87	6.35	60.46	210.15	49.28	43.08	32.01	61.46	21.62	73.91	121.67	149.12	45.88	27.85	119.30	23.86	99.13	33.36	161.28	45.50	181.71	6.90	71.04
2	239461	Transcript	0	34.80	172.89	33.88	5.91	48.10	102.78	32.63	5.91	54.62	214.79	49.73	37.58	30.34	55.33	18.29	74.41	110.09	137.11	43.53	22.49	109.36	23.70	97.77	30.00	140.65	41.38	181.45	6.07	64.39
3	367760	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	497230	Transcript	0	6.74	12.19	3.89	0.00	3.58	4.55	3.29	0.08	1.91	19.44	4.79	5.60	2.64	7.48	9.11	9.29	15.58	22.95	7.59	1.01	6.03	1.40	12.01	0.79	9.08	6.42	9.75	1.79	8.68
5	476867	Transcript	0	0.00	0.00	0.00	0.00	0.00	1.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	495280	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	485529	Transcript	0	2.41	5.93	1.73	0.10	0.35	0.86	0.34	0.20	0.34	8.24	0.76	0.77	0.18	1.42	0.08	1.20	2.32	3.11	0.63	0.27	0.97	0.33	3.44	0.51	2.76	1.31	1.12	1.25	0.80
8	496573	Transcript	0	0.00	0.00	0.49	0.00	0.00	1.00	0.29	0.00	0.41	1.68	0.34	0.01	0.00	0.33	0.00	1.08	0.44	0.00	0.00	0.00	0.63	0.00	0.28	0.31	0.84	0.23	1.33	0.00	0.02
9	IG10_AR6	ActiveIntergenicRegion	0	3.60	1.80	2.81	0.00	4.11	1.40	0.56	0.00	0.31	2.92	0.76	0.35	1.27	0.45	0.00	1.39	3.01	6.42	0.90	0.00	1.54	3.20	2.31	1.21	3.57	7.49	5.65	2.28	3.16
10	IG10_SR4	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	3.98	0.00	0.00	0.00	6.68	1.41	0.00	0.00	0.47	0.00	0.00	0.81	9.07	0.00	0.00	3.04	3.18	4.11	0.00	1.97	1.04	1.21	0.00	0.94
11	IG10_AR7	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.33	1.19	0.00	0.00	0.91	0.00	0.00	0.00	27.18	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER1a	ExonRegion	0	26.40	87.59	33.57	2.52	38.66	86.77	18.30	5.67	12.75	194.89	36.29	20.27	16.25	46.31	1.05	63.84	74.88	113.10	22.85	8.59	71.20	21.98	96.40	9.51	82.96	43.93	106.95	5.72	41.15
13	E1_Ab	KnownBoundary	0	21.47	66.60	14.30	0.00	26.67	106.24	32.04	4.38	12.18	298.23	39.51	16.32	23.88	48.37	17.94	76.27	89.54	99.66	16.18	14.97	87.56	17.94	103.33	13.94	106.53	47.29	95.77	12.04	52.26
14	ER1b	ExonRegion	0	18.91	20.45	20.75	2.56	12.15	43.58	15.52	2.99	6.42	76.56	11.06	9.60	9.06	21.54	3.14	30.98	32.90	99.46	10.66	8.60	52.97	11.27	58.42	4.14	51.46	42.30	30.34	5.41	26.90
15	E1_Ac	KnownBoundary	0	37.81	31.41	42.18	0.00	20.34	44.62	2.92	7.12	8.01	113.29	14.05	16.90	11.50	34.08	0.00	20.27	34.26	144.36	24.28	14.47	54.71	15.61	53.04	2.33	80.47	38.71	39.31	6.34	36.84
16	ER1c	ExonRegion	0	39.56	38.55	39.27	2.34	16.98	64.43	23.45	7.06	14.27	118.34	10.84	20.28	13.45	50.90	10.35	48.79	68.68	159.99	17.52	10.01	69.11	13.10	89.68	3.98	87.14	66.23	23.74	10.45	57.42
17	E1_Da	NovelBoundary	0	2.48	0.00	0.00	0.00	0.00	3.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E1a_E2a	KnownJunction	0	52.08	56.23	37.80	8.84	6.78	37.91	30.27	9.21	13.19	159.78	17.43	25.75	17.26	72.54	8.37	67.40	95.91	225.01	15.96	21.83	41.39	7.05	109.48	13.04	138.24	45.70	60.63	17.25	43.78
19	I1_SR2	SilentIntronRegion	0	9.33	5.75	0.14	0.00	0.00	1.09	0.00	0.00	4.56	4.15	0.00	0.00	2.22	0.00	4.90	11.70	4.38	4.43	0.00	0.00	0.92	3.12	4.29	9.86	3.04	0.00	0.00	0.00	2.52
20	I1_AR2	ActiveIntronRegion	0	12.79	1.64	1.12	0.00	0.00	0.56	0.00	0.00	4.56	0.86	0.00	0.00	2.11	0.34	0.00	3.95	8.92	3.67	0.00	0.00	0.89	2.54	3.28	7.39	3.13	1.38	0.00	0.92	2.14
21	I1_AR3	ActiveIntronRegion	0	1.79	1.29	2.98	0.00	0.00	0.46	0.00	0.00	2.79	1.42	0.00	0.72	2.25	0.98	3.21	1.79	5.87	1.67	0.28	0.00	3.05	1.94	1.38	1.88	2.77	0.90	2.40	1.96	3.97
22	I1_AR8	ActiveIntronRegion	0	1.05	0.40	0.21	0.00	0.00	0.17	0.00	0.23	1.52	0.35	0.00	1.13	0.40	0.00	1.81	0.62	0.18	0.24	0.39	0.00	0.34	0.44	0.22	0.32	0.41	0.19	0.00	0.40	1.22
23	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	0.00	8.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.78	0.00	0.00	0.00	0.00
24	ER2a	ExonRegion	0	69.21	105.36	78.40	5.28	22.28	87.15	33.97	11.05	19.06	199.79	37.45	57.44	21.29	103.63	7.22	74.07	155.11	205.51	22.55	31.05	83.07	30.77	127.76	16.68	166.54	100.05	86.64	9.29	64.43
25	E2a_E4a	KnownJunction	0	101.75	138.64	115.41	10.35	41.56	85.37	44.40	20.45	20.80	226.61	33.53	50.15	40.70	118.36	8.17	90.12	154.53	255.83	40.46	42.01	90.29	46.82	148.34	34.51	169.57	84.67	117.63	8.67	82.96
26	I2_AR3	ActiveIntronRegion	0	0.00	0.98	0.00	0.00	0.00	1.59	0.00	0.00	0.43	0.00	0.00	0.00	0.33	0.00	1.41	0.00	0.46	1.18	0.00	0.84	0.07	0.00	0.00	0.00	0.74	0.00	0.00	0.00	0.00
27	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	1.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	1.64	0.00	0.00	0.00	2.81	0.00	2.91	0.92	13.87	0.00	0.00	0.00	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00
29	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER3b	ExonRegion	0	0.28	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E4_Aa	NovelBoundary	0	2.65	0.00	0.00	0.00	6.48	0.00	0.00	0.00	1.22	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.41	0.00	3.86	0.00	0.00	0.00	0.00
32	I3_AR1	ActiveIntronRegion	0	0.00	2.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER4a	ExonRegion	0	99.48	158.69	93.50	4.78	36.81	97.59	46.72	13.49	24.99	283.28	53.09	72.70	30.41	117.16	13.17	96.81	205.16	231.56	40.98	36.38	105.89	43.01	178.37	30.53	212.92	120.89	135.74	18.21	83.59
34	E4_Da	KnownBoundary	0	21.88	7.56	3.64	0.00	0.00	4.87	2.92	1.84	1.34	18.65	4.33	4.37	7.01	8.62	0.00	13.16	9.50	52.14	8.09	0.00	3.57	1.85	4.92	0.00	5.08	12.10	28.87	0.00	4.99
35	E4a_E5b	KnownJunction	0	63.41	115.37	44.62	10.78	28.59	46.31	25.75	11.30	24.45	197.77	60.74	49.37	15.35	70.06	7.77	69.23	159.82	160.41	32.37	23.49	79.62	24.94	166.61	35.95	143.40	64.50	81.11	6.25	55.73
36	E4a_E7a	KnownJunction	0	43.89	84.25	23.59	9.27	13.71	40.02	0.00	0.00	20.89	120.36	18.85	24.28	8.22	47.13	0.00	26.55	59.49	108.01	16.18	18.69	36.70	18.72	53.29	17.05	69.97	29.78	46.77	3.95	43.51
37	ER4b	ExonRegion	0	6.74	12.19	3.89	0.00	3.58	4.55	3.29	0.08	1.91	19.44	4.79	5.60	2.64	7.48	9.11	9.29	15.58	22.95	7.59	1.01	6.03	1.40	12.01	0.79	9.08	6.42	9.75	1.79	8.68
38	E4_Db	NovelBoundary	0	3.01	8.92	5.88	0.00	0.00	10.32	0.00	2.49	4.20	9.15	1.17	7.38	3.47	4.17	9.97	10.33	10.56	18.49	0.00	0.00	14.44	0.00	9.75	3.05	7.46	7.55	32.45	2.29	1.49
39	I4	Intron	0	4.20	10.43	1.75	1.44	3.62	8.84	2.18	0.60	3.14	11.34	2.88	2.70	2.20	4.57	2.28	5.54	4.95	14.96	5.17	3.14	7.48	0.75	4.35	4.08	6.83	3.59	12.63	0.43	6.47
40	I4_AR1	ActiveIntronRegion	0	5.61	13.84	2.15	2.12	4.89	12.06	3.08	0.88	4.33	14.71	4.02	3.83	3.25	6.47	3.37	7.74	6.60	20.69	7.21	4.44	10.40	1.11	6.04	6.03	9.57	4.98	18.65	0.59	9.34
41	I4_SR1	SilentIntronRegion	0	1.23	3.27	0.92	0.00	0.94	2.11	0.29	0.00	0.64	4.26	0.49	0.33	0.00	0.59	0.00	0.92	1.49	2.94	0.91	0.40	1.37	0.00	0.82	0.00	1.10	0.68	0.00	0.09	0.45
42	E5_Aa	NovelBoundary	0	0.00	4.85	0.00	0.00	0.00	1.50	0.00	0.00	0.00	5.63	10.47	0.00	0.00	0.00	0.00	0.00	3.60	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	7.72	0.00	0.00	0.00
43	ER5a	ExonRegion	0	2.41	5.93	1.73	0.10	0.35	0.86	0.34	0.20	0.34	8.24	0.76	0.77	0.18	1.42	0.08	1.20	2.32	3.11	0.63	0.27	0.97	0.33	3.44	0.51	2.76	1.31	1.12	1.25	0.80
44	E5_Ab	KnownBoundary	0	0.00	22.20	3.09	0.00	0.00	1.73	0.00	0.00	0.00	4.91	0.00	0.00	0.00	1.13	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	2.36	0.00	1.78	2.02	0.00	0.00	0.00
45	ER5b	ExonRegion	0	70.89	151.11	43.30	2.57	33.82	70.42	32.25	13.22	25.51	258.29	50.72	61.16	14.27	75.04	2.60	64.55	143.81	176.90	47.23	21.93	106.40	37.86	149.78	27.72	225.05	65.54	87.35	7.92	59.89
46	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	2.04	1.30	1.54	0.00	0.00	0.00	3.60	2.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.44	0.00	0.00	0.00
47	E5a_E7a	KnownJunction	1	37.28	135.92	38.32	0.00	44.65	85.02	45.31	0.00	36.45	207.64	34.26	57.02	20.16	85.46	0.00	49.42	120.58	219.36	72.83	18.94	121.86	45.26	117.66	16.75	204.13	32.36	111.52	1.66	53.45
48	I5	Intron	0	0.00	0.00	0.00	0.00	0.00	0.72	1.06	0.00	0.59	3.80	3.13	0.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.50	0.00	0.00	0.00	0.00
49	I5_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.74	1.08	0.00	0.60	3.88	3.19	0.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.53	0.00	0.00	0.00	0.00
50	E6_Aa	NovelBoundary	0	0.00	18.23	0.95	0.00	0.00	5.41	0.00	0.00	1.16	2.04	0.00	0.00	0.00	0.00	0.00	0.00	4.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER6a	ExonRegion	0	0.00	0.00	0.99	0.00	0.00	1.99	0.58	0.00	0.81	3.36	0.69	0.03	0.00	0.67	0.00	2.16	0.89	0.00	0.00	0.00	1.26	0.00	0.55	0.62	1.69	0.46	2.65	0.00	0.04
52	E6_Da	NovelBoundary	0	0.00	0.00	1.10	0.00	0.00	0.00	0.00	0.00	0.00	3.67	0.00	1.20	0.00	0.97	0.00	3.29	7.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.78	0.00	0.00	0.00	0.00
53	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	I6	Intron	0	1.37	4.50	0.59	0.15	0.78	3.53	0.56	0.14	1.23	5.85	0.63	0.65	0.47	1.58	0.87	2.42	2.91	4.64	2.28	0.26	2.51	0.17	1.21	0.23	1.63	0.57	1.23	0.35	0.49
55	I6_SR1	SilentIntronRegion	0	1.37	4.50	0.59	0.15	0.78	3.53	0.56	0.14	1.23	5.85	0.63	0.65	0.47	1.58	0.87	2.42	2.91	4.64	2.28	0.26	2.51	0.17	1.21	0.23	1.63	0.57	1.23	0.35	0.49
56	E7_Aa	NovelBoundary	0	4.84	14.54	1.45	0.00	0.00	1.50	0.00	0.00	1.34	8.51	1.17	0.00	2.90	2.02	0.00	0.00	7.68	0.00	0.00	4.13	0.00	0.00	7.24	0.00	5.08	3.60	0.00	0.00	5.88
57	ER7a	ExonRegion	0	96.71	236.83	120.89	27.01	56.03	131.94	44.36	7.72	45.11	367.14	80.81	73.33	34.49	130.38	11.86	116.93	228.37	240.14	60.39	45.24	178.10	45.01	195.24	33.22	303.53	85.31	232.57	14.61	95.89
58	E7_Da	KnownBoundary	0	90.25	167.92	71.56	0.00	97.71	205.27	45.37	12.24	58.65	443.80	105.31	102.08	42.29	139.52	7.57	137.62	302.82	252.62	105.20	51.85	241.87	28.49	208.03	60.05	275.01	84.67	537.88	17.12	150.01
59	ER7b	ExonRegion	0	84.70	228.63	61.04	10.71	52.99	214.59	46.39	14.72	74.10	402.46	72.62	52.50	46.70	117.60	18.55	131.63	188.18	256.21	57.48	52.47	256.34	39.15	176.65	40.08	281.68	67.90	264.85	11.17	140.44
60	E7_Db	KnownBoundary	0	69.19	188.76	56.73	0.00	83.12	147.25	39.19	0.00	49.64	364.30	43.02	34.46	25.60	77.28	68.57	132.50	89.05	202.41	80.25	69.63	167.70	33.74	162.38	39.48	201.55	38.19	160.62	11.28	69.63
61	ER7c	ExonRegion	0	43.21	258.19	34.20	9.29	57.53	118.78	46.96	6.15	96.48	234.69	63.16	54.89	44.43	64.35	35.53	84.97	145.30	161.12	64.22	36.39	147.51	25.42	99.13	50.49	198.33	38.82	255.94	6.42	87.62