Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	VAMP3	Gene	0	195.14	307.17	130.45	129.56	323.08	337.49	187.32	84.44	251.48	284.39	220.42	186.57	144.46	262.73	164.22	152.67	203.34	185.64	173.08	144.44	184.73	254.70	254.34	548.26	320.93	117.97	236.16	85.57	199.45
2	54666	Transcript	0	146.99	190.86	173.69	167.86	378.03	220.02	128.49	71.91	150.74	201.92	156.06	152.87	111.68	182.18	104.37	129.78	157.84	133.79	109.23	94.99	122.20	224.45	218.72	335.55	217.80	111.08	173.69	67.05	167.15
3	470357	Transcript	0	19.85	27.31	31.69	8.20	15.93	29.38	9.19	3.53	9.49	17.21	12.43	13.67	7.99	50.10	11.28	14.87	20.25	25.60	21.69	20.06	25.56	14.48	15.76	25.44	26.57	17.78	19.52	14.78	18.48
4	487194	Transcript	0	7.40	8.93	3.10	0.46	3.19	5.46	4.54	1.87	6.04	4.78	3.18	4.27	1.20	7.72	1.58	6.41	7.73	16.20	4.17	4.92	1.81	3.66	1.13	10.59	5.14	0.76	8.99	3.64	2.14
5	ER1a	ExonRegion	0	114.06	84.54	128.59	183.63	444.12	114.50	59.51	61.12	33.35	139.54	78.03	110.71	70.48	113.28	52.94	109.21	86.68	125.52	72.76	55.32	67.74	185.22	195.96	139.97	138.80	125.38	108.45	58.46	132.39
6	E1_Da	NovelBoundary	0	5.78	0.00	0.00	0.00	0.00	6.56	0.00	0.00	0.00	0.00	0.00	5.15	0.00	0.93	9.57	0.00	0.00	0.00	0.00	4.05	2.01	7.39	0.00	2.51	0.00	0.00	0.00	0.00	0.00
7	E1a_E3a	KnownJunction	0	76.39	64.96	227.52	153.57	272.93	74.39	55.16	44.74	29.17	74.90	85.03	94.85	61.75	89.62	16.94	80.32	109.33	38.40	24.28	40.36	42.16	156.64	125.83	83.68	83.54	58.11	82.80	28.98	97.32
8	E1a_E4b	NovelJunction	0	0.00	0.00	2.52	0.00	7.37	0.00	2.23	0.00	0.00	0.00	0.00	0.00	1.97	0.86	0.00	0.00	1.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	I1	Intron	0	27.88	19.53	21.75	11.66	6.50	20.52	7.35	7.98	5.16	17.29	9.03	13.79	8.43	30.78	6.96	14.08	16.99	25.11	19.68	18.23	13.71	13.14	14.08	18.87	19.72	11.54	11.10	11.41	9.86
10	I1_AR1	ActiveIntronRegion	0	27.83	18.01	21.93	9.98	6.45	19.62	7.11	8.39	5.14	16.73	8.72	14.09	8.25	31.15	7.18	13.80	17.48	24.19	19.26	17.28	13.16	13.54	14.15	18.22	19.02	11.46	10.67	11.47	10.08
11	I1_SR1	SilentIntronRegion	0	28.97	40.83	19.54	34.89	7.19	33.21	10.74	2.55	5.62	25.18	13.45	9.79	10.91	26.23	4.00	18.22	10.55	38.17	25.67	31.56	21.40	7.85	13.28	28.03	29.63	12.82	17.16	10.69	6.92
12	E2_Aa	NovelBoundary	1	172.71	125.45	189.80	153.79	43.47	115.41	104.93	106.75	330.56	213.07	74.09	152.80	152.34	176.14	197.73	115.59	562.19	4.50	16.18	74.76	192.65	98.50	82.20	131.59	162.07	180.80	54.32	195.63	138.16
13	ER2a	ExonRegion	0	32.38	28.73	27.71	16.41	15.50	39.42	13.28	7.06	11.28	24.39	15.08	20.62	14.35	46.20	14.39	17.20	26.88	28.08	35.30	21.35	27.65	17.20	18.12	39.15	30.72	22.08	26.86	17.56	16.76
14	E2_Da	NovelBoundary	0	10.56	7.76	2.47	0.00	32.42	17.84	8.75	2.54	7.86	8.63	4.14	5.51	6.88	13.09	0.00	21.57	16.84	19.65	32.37	11.50	13.36	0.00	4.43	2.87	1.78	2.02	0.00	4.13	5.08
15	E2a_E3a	KnownJunction	0	7.31	25.89	35.68	0.00	16.36	19.34	5.09	0.00	7.70	10.03	9.78	6.72	1.62	54.00	8.17	12.55	13.62	23.12	8.09	18.77	23.46	11.77	13.40	11.72	22.43	13.48	12.18	12.00	20.20
16	E2a_E4b	NovelJunction	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	I2	Intron	0	12.15	9.27	3.51	7.52	6.15	14.43	10.16	2.32	4.94	8.78	6.74	7.00	4.08	10.44	2.90	8.56	14.72	11.79	18.77	10.09	11.38	0.38	3.04	6.32	3.30	2.64	0.77	1.37	1.96
18	I2_SR1	SilentIntronRegion	0	13.11	11.92	3.95	9.67	5.75	17.14	10.57	2.25	5.97	9.52	7.15	8.44	4.67	12.39	3.73	9.45	17.65	12.65	22.03	10.80	12.83	0.30	3.04	7.26	3.95	2.87	0.99	1.52	1.61
19	I2_AR1	ActiveIntronRegion	0	8.15	0.00	1.85	0.00	7.53	4.12	8.11	2.21	1.17	5.68	4.55	1.68	2.02	3.43	0.00	5.34	3.96	7.82	6.74	7.74	5.61	0.52	3.05	2.58	1.02	1.71	0.00	0.51	3.19
20	E3_Aa	NovelBoundary	0	30.38	9.50	5.23	40.33	0.00	12.12	5.61	1.89	9.44	11.22	4.08	8.58	3.44	15.44	8.17	3.52	14.99	10.02	8.09	7.11	3.33	4.08	6.60	2.51	3.22	0.00	0.00	2.11	2.58
21	ER3a	ExonRegion	0	56.99	78.32	109.02	93.81	146.67	80.46	48.72	35.27	33.95	55.98	55.12	100.59	50.36	114.09	28.08	53.62	92.16	71.19	83.34	58.26	39.35	115.12	89.38	100.92	57.77	44.95	50.37	29.04	85.06
22	E3_Da	NovelBoundary	0	31.03	14.35	4.36	0.00	0.00	12.97	2.75	1.99	7.28	21.61	5.50	11.05	4.43	11.34	0.00	3.44	23.63	18.49	8.09	23.49	6.78	2.48	11.87	8.37	1.89	0.00	13.87	2.16	7.36
23	E3a_E4b	KnownJunction	0	117.15	57.69	29.28	29.12	96.53	64.30	31.87	50.91	45.10	85.04	46.88	61.81	45.09	123.88	7.37	33.58	72.28	41.61	56.65	83.94	39.35	212.80	80.57	162.34	92.40	54.63	95.12	38.64	55.40
24	E3a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	I3	Intron	0	19.22	8.53	4.10	6.06	3.72	13.61	4.94	1.87	5.36	10.01	6.04	9.17	5.26	10.59	1.56	6.54	15.91	13.99	19.72	8.60	11.70	1.52	3.36	7.10	6.77	1.33	7.59	3.17	3.39
26	I3_AR1	ActiveIntronRegion	0	23.39	10.20	5.06	7.75	4.75	15.75	5.88	1.79	6.24	11.54	6.69	10.85	6.16	12.30	1.00	7.01	19.36	17.00	21.75	10.39	12.79	1.95	3.91	7.44	6.49	1.19	9.50	2.99	4.05
27	I3_SR1	SilentIntronRegion	0	4.20	2.53	0.66	0.00	0.00	5.93	1.58	2.17	2.20	4.53	3.74	3.14	2.04	4.44	3.62	4.87	3.51	3.15	12.53	2.16	7.83	0.00	1.42	5.91	7.85	1.85	0.72	3.84	1.05
28	E4_Aa	NovelBoundary	1	112.07	99.08	67.89	149.26	116.72	129.80	83.25	118.49	140.93	198.93	84.72	108.79	114.19	120.29	282.04	125.76	211.59	5.27	0.00	92.54	182.42	42.78	79.88	144.63	120.66	190.93	173.39	171.59	98.25
29	ER4a	ExonRegion	0	7.40	8.93	3.10	0.46	3.19	5.46	4.54	1.87	6.04	4.78	3.18	4.27	1.20	7.72	1.58	6.41	7.73	16.20	4.17	4.92	1.81	3.66	1.13	10.59	5.14	0.76	8.99	3.64	2.14
30	E4_Ab	KnownBoundary	0	8.08	16.87	4.21	0.00	7.37	8.17	2.92	2.24	14.80	4.07	4.18	8.83	2.55	9.95	8.37	17.90	17.24	28.51	8.09	10.92	0.00	0.00	0.00	10.23	6.52	0.00	12.52	6.69	3.57
31	ER4b	ExonRegion	0	220.79	237.62	62.94	37.35	126.37	242.29	120.75	118.03	90.62	231.18	170.20	174.29	123.23	273.51	99.00	174.03	180.26	218.02	160.61	154.11	131.24	322.21	282.42	368.40	287.84	161.55	170.85	88.30	185.47
32	E4_Da	NovelBoundary	0	16.69	0.00	5.56	0.00	0.00	1.76	7.90	3.88	1.89	1.88	3.10	4.43	0.00	9.19	0.00	7.04	11.93	4.62	0.00	0.00	0.00	0.00	0.00	5.74	1.70	0.00	0.00	4.04	7.33
33	E4a_E5a	KnownJunction	0	214.29	340.78	110.17	18.12	272.78	209.83	131.71	76.04	133.81	248.38	346.24	205.84	106.17	288.35	115.80	134.41	204.16	227.19	193.99	162.26	130.76	236.28	408.58	375.22	280.39	136.60	402.70	118.39	185.80
34	I4	Intron	0	7.39	1.64	2.35	4.58	0.94	4.56	1.16	2.24	2.94	4.15	1.98	4.05	0.83	4.13	4.46	2.06	8.29	4.86	3.67	1.91	3.37	0.23	0.46	3.57	2.10	0.20	0.00	1.56	1.71
35	I4_SR1	SilentIntronRegion	0	11.48	1.74	2.68	2.23	0.76	6.41	1.25	2.12	3.62	5.46	0.63	2.94	0.30	4.53	3.28	1.93	8.95	4.90	3.48	1.47	5.28	0.00	0.84	4.68	3.22	0.00	0.00	1.40	2.03
36	I4_AR1	ActiveIntronRegion	0	4.55	1.58	2.13	6.24	1.06	3.29	1.10	2.32	2.47	3.24	2.92	4.85	1.20	3.87	5.30	2.16	7.86	4.84	3.82	2.23	2.05	0.39	0.20	2.81	1.33	0.34	0.00	1.68	1.49
37	E5_Aa	NovelBoundary	0	5.43	0.00	0.92	18.12	0.00	0.00	0.00	0.00	0.00	0.00	1.42	4.88	0.00	4.74	0.00	0.00	7.07	10.02	8.09	0.00	3.61	2.14	0.00	8.85	0.00	0.00	0.00	0.00	0.00
38	ER5a	ExonRegion	0	192.58	334.24	229.98	97.31	376.39	267.59	148.20	86.00	130.03	326.04	290.13	200.92	111.49	321.51	95.43	142.50	201.35	202.33	186.69	148.32	140.99	243.51	356.71	489.59	359.50	131.74	261.31	97.46	202.44
39	E5_Da	NovelBoundary	0	2.77	4.27	0.00	0.00	0.00	0.00	0.00	0.00	7.19	5.59	0.00	1.14	0.00	2.24	0.00	3.29	7.61	4.62	0.00	0.00	0.00	0.00	0.00	2.81	0.00	0.00	0.00	0.00	1.49
40	E5a_E6a	KnownJunction	0	173.00	413.88	306.80	118.20	374.18	387.17	188.92	82.61	153.36	335.58	232.45	156.86	115.88	298.47	75.74	168.53	178.30	177.36	267.05	163.25	170.15	251.30	294.51	580.33	402.42	118.23	198.04	121.90	195.57
41	I5	Intron	0	2.50	2.95	1.95	0.60	1.63	2.97	0.84	0.77	3.55	2.40	0.69	1.38	0.00	1.51	2.52	2.98	4.72	1.95	4.78	1.31	1.90	0.15	0.15	4.47	2.02	0.26	0.00	0.54	0.44
42	I5_AR1	ActiveIntronRegion	0	0.00	6.00	0.00	0.00	2.29	3.22	0.94	1.72	2.89	2.70	0.56	1.44	0.00	2.12	4.73	3.48	7.68	0.90	4.48	5.16	3.34	0.84	0.00	0.00	4.68	0.74	0.00	0.00	0.00
43	I5_SR1	SilentIntronRegion	0	3.27	0.98	1.02	2.19	1.49	4.62	2.46	1.12	2.23	1.76	0.36	0.56	0.00	1.39	0.00	5.30	2.28	4.71	2.93	0.00	1.31	0.00	0.55	1.31	0.87	0.48	0.00	0.00	0.61
44	I5_SR3	SilentIntronRegion	0	2.42	3.63	3.04	0.00	2.48	1.75	0.00	0.00	4.15	2.54	0.69	1.03	0.00	1.35	2.85	1.78	5.41	0.54	5.83	0.56	1.31	0.00	0.00	6.50	0.81	0.00	0.00	0.92	0.42
45	I5_AR2	ActiveIntronRegion	0	3.55	2.13	3.07	0.00	0.32	2.50	0.00	0.61	4.79	2.75	1.16	2.65	0.00	1.41	3.35	1.56	4.52	1.38	5.85	0.91	2.24	0.00	0.00	8.74	2.84	0.00	0.00	1.08	0.62
46	E6_Aa	NovelBoundary	0	2.89	0.00	0.00	10.14	6.63	9.13	5.38	0.00	1.55	0.00	2.66	2.59	0.00	3.41	0.00	5.97	20.33	4.62	0.00	0.00	0.00	0.00	0.00	5.44	1.63	0.00	0.00	0.00	1.35
47	ER6a	ExonRegion	0	290.43	413.55	184.53	220.63	574.50	410.83	180.42	99.74	149.88	345.82	274.23	193.73	136.95	342.46	120.46	199.82	225.07	258.52	196.79	206.98	220.81	342.43	314.79	624.36	469.33	115.97	248.31	80.08	215.34
48	E6_Da	KnownBoundary	0	366.95	577.82	146.67	221.52	363.71	552.68	345.75	124.61	234.09	535.11	399.58	232.25	178.01	357.63	139.52	286.72	257.64	350.10	274.92	287.63	291.60	473.34	502.15	721.55	616.05	179.42	306.24	144.10	325.65
49	ER6b	ExonRegion	0	250.54	423.08	164.97	166.39	417.04	471.18	270.82	109.88	389.70	391.33	305.12	253.06	202.80	343.64	243.23	199.81	277.50	237.44	230.64	189.28	256.72	331.49	334.36	782.98	431.06	149.75	329.81	113.72	271.74