Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ZNF814	Gene	0	25.39	28.16	25.42	38.76	22.95	31.06	16.34	19.35	33.68	44.44	19.28	39.96	16.01	32.43	44.60	31.15	55.75	20.65	32.16	22.08	22.98	7.76	18.66	36.83	31.65	20.57	25.97	42.76	22.64
2	376205	Transcript	0	17.61	38.39	25.96	21.35	22.33	59.65	15.42	14.42	31.15	45.92	57.21	60.14	17.08	55.18	11.36	28.97	113.12	0.00	2.02	9.18	30.00	7.77	19.96	33.68	26.78	18.95	29.48	26.14	11.44
3	435989	Transcript	0	19.26	24.03	18.15	20.84	10.90	37.85	7.98	13.45	27.00	44.55	21.57	28.26	12.90	29.73	37.11	26.51	46.44	17.82	26.57	16.46	23.28	4.53	12.76	35.30	28.52	15.51	29.71	32.28	18.26
4	ER1a	ExonRegion	0	103.85	26.26	102.17	213.28	114.82	51.44	127.59	55.42	53.47	39.09	6.73	145.79	4.64	38.00	61.46	71.95	94.25	40.29	88.08	82.99	28.19	62.54	93.05	43.09	34.69	53.65	32.27	129.39	10.89
5	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.24	0.00	7.87	0.00	3.07	0.00	0.00	0.00	0.00	3.78	0.00	0.00	3.89	3.17	0.00	0.00	3.05	0.00	0.00	0.00	1.89	1.62
6	E1a_E2a	KnownJunction	0	30.97	17.16	59.90	31.28	0.00	26.40	171.53	43.50	68.34	59.96	7.40	266.59	3.09	46.06	90.69	50.80	120.15	46.23	201.64	63.10	9.11	19.69	164.54	24.34	39.93	72.65	62.97	168.04	16.97
7	E1a_E3a	NovelJunction	0	2.95	0.00	0.00	0.00	0.00	1.50	2.46	0.00	0.00	1.72	0.00	2.29	3.60	1.09	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
8	Ix_SR2	SilentIntronRegion	0	2.04	1.41	1.14	1.46	1.00	1.59	1.37	1.13	3.21	2.36	0.08	2.39	0.26	1.26	3.38	1.35	5.59	0.68	2.83	1.58	1.26	0.12	0.37	1.76	0.97	0.75	1.62	1.55	0.77
9	Ix_AR1	ActiveIntronRegion	0	0.00	1.64	0.03	0.00	2.49	0.00	0.00	0.00	1.87	2.21	0.00	0.94	0.00	0.95	9.86	1.27	0.05	0.00	1.63	0.00	0.00	0.00	0.00	1.10	2.19	0.80	0.00	0.83	0.19
10	E2_Aa	NovelBoundary	0	2.83	0.00	1.54	0.00	7.37	1.61	0.00	2.39	14.80	5.91	0.00	5.33	0.00	5.32	17.34	0.00	7.16	0.00	0.00	3.14	5.94	0.00	0.00	13.58	1.74	0.00	7.60	1.84	1.52
11	ER2a	ExonRegion	0	41.74	29.43	74.10	51.94	68.60	24.81	87.65	31.43	66.89	28.42	7.20	197.72	6.72	46.11	30.25	28.36	113.34	29.51	73.77	39.13	16.88	21.32	81.02	29.56	37.04	48.89	86.49	111.16	17.43
12	E2_Da	NovelBoundary	0	4.95	3.78	4.39	0.00	0.00	0.00	0.00	4.23	10.69	4.03	0.00	1.75	0.00	5.85	17.74	0.00	18.73	4.62	0.00	0.00	4.05	0.00	2.02	8.97	1.93	0.00	0.00	5.80	1.58
13	E2a_E3a	KnownJunction	1	41.76	7.76	28.45	37.96	54.97	6.94	2.92	11.74	9.62	6.07	4.46	15.69	1.66	30.07	0.00	0.00	34.06	18.49	8.09	0.00	9.27	6.86	14.82	11.42	27.32	28.80	0.00	25.03	3.50
14	Ix	Intron	0	4.13	2.32	2.23	2.92	1.45	2.85	2.84	1.02	7.53	5.51	0.75	8.32	0.34	3.55	5.37	3.51	17.53	1.52	3.79	3.05	2.54	0.47	0.60	3.66	1.91	1.46	1.83	4.47	1.76
15	Ix_AR4	ActiveIntronRegion	0	5.48	0.25	1.94	1.11	1.51	2.02	2.34	0.57	6.91	5.04	0.00	5.02	0.00	2.17	2.91	3.68	7.64	0.95	1.49	1.16	1.22	0.56	0.56	1.83	1.22	0.49	0.85	3.41	2.02
16	Ix_SR2	SilentIntronRegion	0	6.63	2.35	1.28	0.87	0.00	2.27	1.94	1.12	8.35	1.89	1.45	12.06	0.00	3.08	10.80	3.89	20.89	5.07	8.84	2.01	3.12	0.00	0.69	5.99	4.93	0.52	0.00	3.96	0.00
17	Ix_AR3	ActiveIntronRegion	0	3.39	6.02	1.12	7.31	0.00	1.37	3.36	0.00	20.69	2.65	0.00	4.74	0.00	1.28	11.20	3.59	27.63	7.73	6.03	2.81	1.90	1.05	1.81	3.23	1.43	1.57	4.88	0.00	0.00
18	Ix_AR2	ActiveIntronRegion	0	4.29	2.67	1.68	7.31	0.00	1.03	3.02	0.00	12.92	2.89	0.00	4.10	0.00	0.74	1.40	0.47	17.97	4.09	2.26	2.81	0.27	1.80	0.68	4.17	0.45	0.98	7.33	0.00	0.00
19	Ix_AR1	ActiveIntronRegion	0	3.07	6.45	2.83	4.20	2.27	3.98	4.54	2.35	7.97	7.73	1.34	10.84	0.36	3.76	8.23	3.97	27.30	2.13	6.50	6.40	4.18	0.49	0.04	8.30	2.71	1.50	0.63	3.17	1.45
20	Ix_SR1	SilentIntronRegion	0	1.68	2.83	2.62	5.63	1.13	3.88	2.60	0.89	7.45	5.80	1.66	12.30	1.12	6.54	6.53	2.84	28.02	0.91	4.85	4.32	3.83	0.28	1.10	2.83	1.93	3.66	4.89	8.30	2.12
21	ER3a	ExonRegion	0	5.70	8.04	7.88	8.86	4.21	9.10	2.45	2.55	7.62	8.39	4.48	12.65	1.28	12.14	9.66	3.59	17.76	6.50	7.81	2.00	5.64	1.67	6.70	4.27	8.71	4.62	9.94	7.56	1.68
22	E3_Da	KnownBoundary	0	17.81	45.95	15.65	26.31	6.78	38.83	13.62	24.04	26.31	33.07	89.78	58.64	21.53	38.29	7.57	13.23	96.90	4.62	24.28	6.86	26.11	6.51	28.12	27.04	33.00	17.72	23.36	16.76	8.98
23	E3a_E3b	KnownJunction	0	42.53	118.28	32.07	45.73	54.97	166.40	42.28	35.53	73.51	118.08	193.92	140.72	40.41	98.91	36.87	90.65	229.01	0.00	8.09	14.39	93.38	13.32	68.06	80.87	70.16	52.05	69.78	60.43	25.12
24	ER3b	ExonRegion	0	7.13	12.89	4.21	5.27	6.78	39.32	4.11	1.53	11.16	24.73	12.91	23.32	3.11	14.45	9.38	12.12	30.00	11.36	22.20	4.07	17.21	1.62	5.02	13.60	8.76	5.69	27.68	11.52	4.18
25	E3_Ab	KnownBoundary	0	37.46	96.95	21.00	19.41	50.25	224.60	37.59	11.79	60.94	156.91	118.85	126.99	13.02	74.96	37.67	117.58	178.54	34.42	88.79	11.33	90.21	6.90	38.22	83.38	54.48	46.65	123.20	53.20	27.86
26	ER3c	ExonRegion	0	15.20	17.90	8.26	7.09	7.07	35.06	6.57	4.62	15.59	31.00	19.42	26.01	5.65	21.27	8.18	18.05	36.80	13.69	29.59	7.41	23.74	2.53	9.88	19.40	15.72	11.56	30.79	18.25	8.66
27	E3_Db	KnownBoundary	0	11.03	50.22	20.31	26.31	14.74	37.02	17.91	0.00	23.14	56.40	30.18	23.40	17.13	26.94	27.11	29.15	66.11	4.62	48.55	11.50	27.68	8.99	13.35	32.48	18.00	20.21	83.54	56.21	27.90
28	E3b_E3c	KnownJunction	0	16.40	31.51	40.66	39.69	20.34	35.34	10.87	9.85	17.30	42.82	21.42	66.96	9.71	66.38	8.57	21.65	115.18	0.00	0.00	14.89	14.76	10.94	9.26	39.54	22.39	9.61	41.25	31.45	8.45
29	E3b_E3d	NovelJunction	1	2.54	4.27	3.36	9.06	13.56	9.21	0.00	1.99	11.66	10.51	5.79	6.72	1.66	9.53	0.00	6.81	18.10	0.00	0.00	0.00	12.92	0.00	4.68	16.45	12.99	7.51	11.58	32.04	15.29
30	ER3d	ExonRegion	0	23.60	23.23	21.79	21.59	3.69	45.20	13.21	14.01	14.31	44.99	21.53	22.22	11.39	28.45	18.25	30.07	39.72	12.59	21.14	9.99	31.80	7.32	9.83	28.19	24.90	21.61	37.54	30.66	14.24
31	E3_Ac	KnownBoundary	0	28.02	38.00	24.64	35.37	6.63	71.44	25.00	14.98	23.97	47.58	15.75	26.14	14.20	36.89	32.09	45.82	51.59	9.63	48.55	10.75	46.33	3.79	7.19	36.07	42.96	33.26	38.22	32.13	13.04
32	ER3e	ExonRegion	0	19.57	21.38	18.48	28.42	5.40	37.60	8.75	15.37	17.73	42.04	19.02	20.32	14.44	32.93	21.73	27.44	46.58	13.99	36.37	13.01	22.70	4.76	15.72	35.95	31.88	18.95	40.38	33.31	10.90
33	E3_Dc	KnownBoundary	0	18.29	33.74	25.31	20.28	0.00	37.49	12.36	17.97	35.63	50.65	12.97	31.48	15.48	39.48	16.54	40.70	77.99	19.26	0.00	24.89	33.45	0.00	17.78	21.35	35.31	7.72	22.61	32.84	5.81
34	E3c_E3d	KnownJunction	0	11.50	3.78	31.09	0.00	14.00	36.87	8.53	12.29	33.80	22.77	13.51	32.89	18.21	55.41	0.00	3.60	108.29	0.00	0.00	7.44	11.87	6.81	2.51	14.30	14.55	14.12	6.91	12.67	12.18
35	ER3f	ExonRegion	1	16.84	21.23	24.64	14.97	5.02	31.87	4.85	21.31	27.60	44.07	11.21	28.07	15.04	33.42	20.08	22.43	52.90	14.26	21.48	10.51	20.05	5.04	17.24	30.60	35.19	20.64	23.91	35.71	14.54
36	E3_Ad	KnownBoundary	0	77.03	63.79	100.61	66.43	54.38	102.75	20.60	54.74	70.25	107.77	72.76	145.21	33.85	149.85	52.42	41.54	276.39	14.51	64.74	26.13	65.82	28.54	33.19	89.54	75.54	63.30	73.85	90.13	64.21
37	ER3g	ExonRegion	0	25.00	42.51	24.10	38.17	16.14	39.51	11.36	20.59	41.16	54.94	42.62	36.78	20.43	33.36	43.00	25.31	60.99	23.30	45.63	16.47	29.07	4.80	18.97	53.94	44.24	26.19	31.18	42.86	29.30
38	E3_Dd	KnownBoundary	0	25.01	30.83	20.21	20.06	21.37	40.78	15.68	11.00	31.76	48.49	23.54	37.14	18.95	50.38	58.20	34.42	54.47	13.87	32.37	37.30	32.89	3.79	14.58	21.95	24.63	4.03	67.39	22.15	22.58
39	E3d_E3e	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER3h	ExonRegion	0	23.70	28.87	15.60	26.15	16.82	44.46	7.64	8.38	41.95	55.68	41.78	32.10	13.46	35.61	78.67	31.35	46.77	27.61	36.90	33.73	21.85	3.05	17.21	60.36	37.16	7.99	36.48	38.20	27.66
41	E3_Ae	KnownBoundary	0	35.33	25.69	9.17	9.27	27.26	45.70	13.33	13.09	26.89	37.91	33.31	26.63	9.62	29.03	75.94	31.13	49.81	23.12	8.09	29.11	15.36	7.00	13.79	62.63	38.11	2.02	24.30	49.96	27.63
42	ER3i	ExonRegion	0	23.98	24.34	19.92	40.80	25.94	50.91	16.60	16.29	28.53	47.50	35.65	31.39	19.88	40.63	37.24	32.44	40.81	17.44	25.53	24.22	26.99	2.75	16.49	42.12	38.23	17.46	36.94	37.66	25.98
43	E3_De	KnownBoundary	0	23.18	25.79	16.00	0.00	0.00	42.05	27.12	8.21	37.03	58.00	22.08	25.06	31.02	32.68	33.29	75.58	43.40	37.76	24.28	6.53	15.60	4.33	11.13	41.93	46.11	17.77	34.69	44.48	16.94
44	ER3j	ExonRegion	0	25.00	33.93	24.50	36.24	22.21	28.42	10.08	22.03	39.95	53.28	20.42	35.58	21.51	36.74	59.17	36.58	62.80	23.29	31.11	24.00	25.47	5.60	14.48	43.76	36.59	21.61	22.93	45.32	30.68