Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ZNF345	Gene	0	15.75	18.83	10.15	28.41	10.60	22.38	30.08	6.74	23.11	22.14	12.81	20.76	2.83	20.90	21.56	30.91	47.09	11.11	22.99	24.27	14.88	6.19	2.17	19.82	14.65	6.06	9.34	13.14	9.53
2	318177	Transcript	0	6.44	8.05	5.01	10.94	4.67	8.71	7.70	2.28	9.59	7.18	3.91	8.65	1.30	7.74	7.15	11.86	19.36	3.66	9.77	8.84	4.60	1.63	0.99	7.65	4.24	2.75	2.98	4.71	3.71
3	420450	Transcript	0	19.19	5.85	12.21	49.76	18.59	16.70	44.99	14.86	7.12	19.44	21.02	19.76	0.82	12.10	23.91	19.51	25.97	6.19	24.95	9.80	18.33	13.98	0.93	3.10	10.84	19.40	22.38	24.05	6.29
4	432005	Transcript	0	1.63	0.98	1.02	3.26	0.74	1.50	0.31	5.48	0.17	1.08	0.90	2.43	0.00	3.71	4.33	3.66	2.62	0.00	3.39	2.96	2.61	3.53	0.27	0.33	2.58	2.39	1.67	2.47	0.41
5	344705	Transcript	0	4.36	0.00	2.43	7.76	2.87	2.17	8.73	0.97	3.47	4.65	4.32	4.11	0.62	3.88	0.00	1.49	13.54	0.00	4.05	6.45	0.78	0.95	0.00	5.83	5.10	4.81	0.97	6.92	1.29
6	IG31_AR2	ActiveIntergenicRegion	0	2.17	2.31	4.09	6.65	4.53	2.67	2.75	0.62	4.06	4.72	2.71	3.61	0.22	6.54	5.00	3.74	12.13	2.11	7.00	1.63	3.36	5.63	0.46	2.90	3.37	3.05	1.85	6.04	2.70
7	ER1a	ExonRegion	0	4.91	2.88	7.16	14.15	6.46	5.43	1.33	1.21	1.66	4.28	3.52	9.93	0.43	6.70	0.00	8.98	15.76	1.27	2.10	4.53	0.00	0.59	0.59	2.12	1.88	4.24	0.60	4.29	2.20
8	E1_Da	NovelBoundary	0	2.60	0.00	0.00	0.00	0.00	1.96	7.84	7.42	1.40	0.00	0.00	1.27	0.00	8.22	16.14	3.82	10.08	0.00	0.00	3.56	0.00	0.00	0.00	0.00	5.08	1.93	0.00	0.00	0.00
9	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	I1	Intron	0	2.89	0.00	3.76	1.61	2.19	4.02	2.26	1.24	2.77	4.22	1.87	3.74	0.00	9.03	8.04	6.93	16.43	5.19	2.87	2.48	2.88	1.22	0.81	2.42	3.53	3.53	0.00	6.59	1.21
11	I1_AR1	ActiveIntronRegion	0	2.90	0.00	3.77	1.62	2.20	4.03	2.27	1.25	2.78	4.24	1.88	3.76	0.00	9.07	8.08	6.97	16.51	5.22	2.88	2.49	2.90	1.22	0.82	2.43	3.55	3.55	0.00	6.62	1.21
12	E2_Aa	NovelBoundary	0	8.32	4.17	2.94	66.22	0.00	7.29	12.76	1.89	1.31	8.63	0.00	5.81	0.00	4.36	43.25	28.46	7.95	23.12	8.09	6.20	4.09	7.05	0.00	5.26	1.93	10.77	5.07	16.00	2.97
13	ER2a	ExonRegion	0	19.19	5.85	12.21	49.76	18.59	16.70	44.99	14.86	7.12	19.44	21.02	19.76	0.82	12.10	23.91	19.51	25.97	6.19	24.95	9.80	18.33	13.98	0.93	3.10	10.84	19.40	22.38	24.05	6.29
14	E2_Ab	KnownBoundary	0	51.55	21.72	28.00	146.67	46.57	37.91	108.71	31.90	22.44	52.25	59.13	41.23	4.71	27.19	51.82	52.86	74.10	9.25	72.61	25.55	47.77	31.46	7.98	13.46	33.95	44.80	47.56	57.20	21.59
15	ER2b	ExonRegion	0	19.57	10.63	21.17	52.15	17.83	20.62	60.37	16.42	14.43	36.78	30.88	28.97	6.73	15.49	19.45	18.91	46.11	3.66	30.01	13.98	25.67	15.51	3.62	2.43	16.59	20.76	20.87	27.11	14.98
16	E2_Da	NovelBoundary	0	0.00	8.34	1.15	0.00	0.00	1.57	5.26	0.00	1.31	8.87	0.00	1.48	0.00	3.50	8.37	7.34	16.95	9.25	0.00	3.89	0.00	2.38	2.02	3.05	5.34	0.00	0.00	0.00	0.00
17	E2a_E3b	KnownJunction	0	0.00	0.00	17.24	0.00	6.19	5.26	26.15	6.37	7.03	7.99	6.11	19.94	7.10	9.66	8.37	0.00	36.06	0.00	8.09	3.23	1.76	3.89	0.00	0.00	6.21	1.85	2.34	4.13	12.81
18	I2	Intron	0	3.98	4.27	3.35	0.53	1.09	2.04	0.90	0.68	3.00	2.47	1.06	6.27	0.00	5.48	5.80	6.93	23.16	2.15	1.90	1.11	0.95	0.40	0.27	2.24	2.55	1.75	0.00	5.81	0.40
19	I2_AR1	ActiveIntronRegion	0	3.99	4.29	3.36	0.53	1.09	2.05	0.90	0.69	3.01	2.47	1.06	6.29	0.00	5.49	5.82	6.95	23.23	2.15	1.90	1.12	0.96	0.40	0.27	2.24	2.55	1.76	0.00	5.83	0.40
20	E3_Aa	NovelBoundary	0	2.42	4.75	6.83	0.00	0.00	3.45	0.00	0.00	3.05	0.00	0.00	12.71	0.00	9.70	9.97	17.44	16.07	5.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	4.99
21	ER3a	ExonRegion	0	8.78	4.82	3.29	3.55	4.84	1.01	1.37	0.79	2.07	5.55	2.37	6.80	0.05	5.28	2.45	6.68	19.48	2.01	11.20	4.20	0.66	0.04	0.02	4.72	4.32	1.79	1.83	5.49	2.18
22	E3_Ab	KnownBoundary	0	5.96	0.00	5.81	0.00	0.00	1.96	4.75	2.19	1.86	19.13	4.68	12.35	1.18	8.11	7.97	12.85	20.26	9.25	0.00	8.27	0.00	0.00	0.00	2.81	0.00	2.19	0.00	5.80	2.01
23	ER3b	ExonRegion	0	7.39	3.28	9.26	0.00	7.41	10.90	8.34	5.32	7.53	9.68	4.45	19.52	2.67	13.16	4.47	20.66	32.38	10.11	9.48	8.32	0.77	3.36	1.34	4.68	4.06	1.40	2.10	3.44	6.22
24	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.43	0.00	0.00	1.54	0.00	1.06	0.00	0.00	3.74	0.00	0.00	0.00	1.89	0.00	0.00	2.87	0.00	0.00	0.00	0.00	0.00
25	E3a_E4a	KnownJunction	0	13.09	14.54	2.59	0.00	0.00	14.20	17.51	0.00	4.45	19.09	7.88	8.04	1.72	16.88	15.55	35.95	33.02	9.25	8.09	17.95	0.00	6.32	5.02	11.90	13.60	3.91	0.00	4.58	9.71
26	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	7.02	0.00	0.00	0.00	2.89	0.00	2.28	0.00	0.00	1.33	0.00	0.00	4.13	3.61	3.99	0.00	0.00	1.59	0.00	0.00	0.00	0.00
27	I3_AR1	ActiveIntronRegion	0	0.75	0.00	0.37	0.00	0.00	2.00	2.13	0.00	1.54	1.02	1.15	1.05	0.00	2.61	5.29	1.50	4.23	0.00	0.94	0.97	4.23	1.27	0.00	0.76	0.50	1.66	0.78	0.76	1.68
28	I3_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.20	0.00	0.00	0.00	1.30	0.00	0.00	4.34	5.01	0.00	0.00	0.00	2.24	0.00	0.00	0.08	0.00	0.22	0.00	3.26	0.00
29	I3_SR4	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.62	0.00	0.00	0.51	0.00	0.00	3.94	0.00	0.25	0.00	0.00	1.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00
30	I3_AR5	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	2.24	0.00	0.00	1.12	1.00	0.00	3.01	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	2.62	0.00
31	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	1.31	4.07	0.00	0.00	0.00	0.00	0.00	0.00	2.97	0.00	0.00	0.00	3.69	0.00	0.00	0.00	0.00	0.00	0.00	4.22	0.00
32	ER4a	ExonRegion	0	9.46	9.85	3.76	3.87	0.00	18.28	14.11	7.91	5.42	16.73	11.13	9.39	2.22	18.89	10.21	39.90	33.94	5.14	11.98	35.22	8.89	5.41	3.62	11.89	14.55	3.05	0.00	3.74	6.71
33	ER4b	ExonRegion	0	17.39	10.83	3.49	27.90	0.00	29.53	36.06	12.07	15.11	16.26	16.66	15.07	3.90	27.14	33.81	53.52	48.01	13.34	20.62	34.14	24.99	5.14	4.42	17.93	23.98	3.43	11.67	6.88	4.82
34	ER4c	ExonRegion	0	16.20	11.76	7.27	31.66	12.95	26.49	40.05	4.60	13.12	45.03	20.99	40.16	3.56	24.63	28.00	38.82	53.81	13.65	35.03	27.85	16.46	2.54	3.47	15.85	21.05	4.81	13.35	17.87	6.04
35	E4_Ac	KnownBoundary	0	24.42	11.63	3.94	58.24	41.85	30.43	26.55	12.19	1.55	34.39	14.14	23.13	0.00	17.68	16.74	34.81	45.58	9.25	24.28	52.27	6.30	2.19	4.63	13.82	25.16	7.81	0.00	13.66	6.40
36	ER4d	ExonRegion	0	18.07	12.49	14.25	73.39	40.12	24.28	33.91	15.58	13.40	24.26	24.14	24.01	2.30	30.81	29.90	37.60	47.33	4.97	15.03	27.00	6.34	3.93	2.10	18.25	22.21	4.55	16.84	15.31	3.67
37	E4_Db	KnownBoundary	0	11.09	0.00	24.37	69.67	29.33	15.00	37.76	6.67	24.73	19.61	25.72	16.75	4.78	32.48	61.19	50.80	41.57	4.62	0.00	14.97	10.55	6.37	0.00	23.21	18.26	2.19	13.72	10.69	3.37
38	E4b_E4d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER4e	ExonRegion	0	10.40	13.24	19.08	25.54	7.51	23.98	29.45	3.63	11.00	32.97	24.07	23.78	6.50	31.72	23.41	30.71	40.07	13.81	29.18	28.40	13.65	4.09	1.75	22.60	18.30	0.54	9.70	9.24	3.83
40	E4_Ad	KnownBoundary	0	8.32	17.45	17.89	36.45	13.85	23.17	27.06	6.87	9.41	28.32	15.79	33.67	7.48	26.45	16.74	17.59	37.93	27.74	16.18	26.30	19.93	4.57	2.17	29.55	24.17	0.00	10.14	19.05	5.35
41	ER4f	ExonRegion	0	23.48	15.73	17.66	22.92	13.95	24.51	35.10	7.15	15.29	32.84	13.67	27.82	4.15	28.00	21.40	24.05	53.27	13.04	18.29	30.51	17.80	7.75	2.39	26.56	21.27	6.05	16.56	18.59	8.66
42	E4_Dc	KnownBoundary	0	16.63	9.70	16.27	0.00	14.74	25.86	34.33	4.83	15.56	43.30	10.76	31.14	2.74	26.23	43.05	16.45	75.70	32.36	8.09	35.15	22.50	6.76	2.41	19.26	22.05	12.49	33.60	36.57	19.08
43	E4c_E4e	KnownJunction	0	8.73	0.00	4.86	15.53	5.75	4.34	17.45	1.94	6.94	9.31	8.64	8.22	1.24	7.75	0.00	2.98	27.08	0.00	8.09	12.90	1.56	1.90	0.00	11.66	10.19	9.61	1.94	13.84	2.58
44	ER4g	ExonRegion	0	23.88	17.57	19.04	30.12	16.60	20.90	31.33	9.40	17.16	30.29	11.12	24.68	2.59	30.56	22.00	32.84	65.55	17.99	17.35	35.17	15.84	6.90	1.95	19.46	19.25	8.45	9.81	21.59	13.33
45	E4_Ae	KnownBoundary	0	23.59	8.53	17.22	51.98	17.68	29.97	42.28	9.95	15.07	23.73	19.17	20.72	3.28	28.43	25.91	25.63	71.60	33.13	32.37	43.67	9.27	2.43	0.00	22.01	27.24	20.43	4.47	32.35	16.54
46	ER4h	ExonRegion	0	25.04	22.37	11.71	40.02	13.30	18.46	41.54	8.68	22.39	29.95	21.47	27.25	1.53	29.08	24.09	42.81	73.55	13.23	26.26	28.75	15.14	11.30	1.94	25.73	25.22	9.34	10.43	23.08	9.00
47	E4_Dd	KnownBoundary	0	23.54	29.28	14.40	26.75	7.37	19.72	35.19	7.37	19.52	18.22	12.40	25.99	1.75	25.55	29.10	39.86	50.87	4.62	24.28	24.07	18.09	6.37	2.07	21.65	9.55	13.86	21.17	6.83	9.61
48	ER4i	ExonRegion	0	12.92	28.23	3.79	34.17	11.16	35.05	40.28	3.74	40.03	19.63	11.33	20.94	1.66	16.90	24.50	36.81	44.27	13.60	34.29	25.36	21.62	3.16	1.26	23.18	11.12	4.30	7.53	7.12	17.74
49	E4_De	KnownBoundary	0	2.89	0.00	4.63	29.98	34.78	29.93	13.90	0.00	28.90	8.03	4.59	7.02	1.72	12.32	40.46	23.87	20.24	4.62	24.28	40.69	28.80	4.33	0.00	11.13	0.00	2.02	7.50	0.00	6.27
50	ER4j	ExonRegion	0	12.08	24.49	9.59	26.05	7.40	28.40	28.10	7.12	34.63	18.88	9.76	17.87	4.73	18.97	26.17	31.78	42.18	11.35	25.77	26.61	17.74	5.89	3.35	23.75	10.75	4.97	9.49	9.06	10.46
51	E4_Df	NovelBoundary	0	7.79	11.15	0.00	8.20	0.00	5.03	13.56	0.00	24.24	0.00	0.00	1.66	1.59	6.85	7.18	10.33	9.86	0.00	0.00	11.50	12.67	0.00	0.00	18.72	1.93	1.80	0.00	2.29	1.39
52	I4_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.96	0.00	1.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.20	0.00	0.00	0.00	0.00	0.00	0.00	1.94	0.00	1.57	0.00	0.00	0.00
53	ER5a	ExonRegion	0	3.25	1.96	2.03	6.53	1.48	1.05	0.61	3.95	0.34	2.16	1.81	1.97	0.00	5.14	8.67	7.32	3.91	0.00	6.79	1.79	1.61	3.08	0.55	0.65	3.56	4.77	3.34	4.94	0.81