Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ANKLE1	Gene	0	32.27	25.27	50.27	52.83	127.41	42.68	16.71	12.49	23.21	30.75	35.35	37.89	75.43	18.66	20.20	28.33	21.72	47.44	74.12	21.53	25.14	77.17	36.34	30.82	31.26	28.52	53.09	80.19	48.28
2	404261	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
3	291449	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	438921	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.11	1.52	1.39	0.00	1.93	0.00	3.82	0.00	0.00	0.00	0.00	0.00	2.14	0.00	0.00	0.00	0.00	4.17	8.36	0.00
5	433424	Transcript	0	8.08	0.00	1.54	8.63	0.00	0.00	2.12	0.00	0.00	0.00	1.55	0.00	1.97	1.26	0.00	6.43	0.00	4.62	0.00	0.00	0.00	4.38	2.02	0.00	0.00	0.00	0.00	16.67	3.37
6	392729	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	404085	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	394458	Transcript	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.86	2.22	0.00	0.00	0.00	0.00	1.98	1.68
9	IG21_SR1	SilentIntergenicRegion	0	0.00	0.00	0.91	0.00	0.00	1.49	0.00	0.00	0.61	0.78	0.00	1.00	0.00	0.49	0.00	0.00	3.24	1.05	1.73	0.00	2.32	0.00	0.00	0.00	1.55	0.00	0.00	0.00	0.00
10	ER1a	ExonRegion	0	0.00	0.00	0.88	0.00	1.27	0.15	0.00	0.00	0.00	0.00	0.13	0.00	1.49	0.12	0.00	0.23	0.00	0.69	2.96	0.00	0.00	0.00	0.00	0.00	0.10	0.00	0.00	0.00	0.32
11	E1_Ab	KnownBoundary	0	0.00	0.00	1.54	0.00	5.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER1b	ExonRegion	0	3.07	0.00	1.70	0.00	6.18	2.36	1.47	0.00	0.01	1.93	0.78	1.02	2.90	1.74	0.00	8.18	2.57	3.19	1.91	1.36	2.16	3.65	1.81	2.05	1.65	1.36	0.00	1.23	3.20
13	E1_Ac	KnownBoundary	0	0.00	0.00	0.95	0.00	11.94	8.29	2.69	0.00	1.67	2.04	2.56	2.62	2.71	3.86	0.00	21.34	6.35	18.49	0.00	0.00	9.27	3.69	4.33	2.69	3.75	3.48	0.00	1.93	6.67
14	ER1c	ExonRegion	0	8.54	4.56	15.48	31.49	113.61	15.33	7.64	1.30	3.18	13.07	8.50	13.26	17.05	4.81	8.56	27.59	6.54	47.50	26.65	3.12	5.80	49.68	19.49	6.42	9.35	15.37	12.87	40.03	11.41
15	E1_Da	KnownBoundary	0	12.50	0.00	40.96	29.98	173.31	18.03	14.13	0.00	6.49	19.49	13.35	23.46	25.57	5.21	15.55	18.13	7.90	32.88	40.46	11.66	7.86	75.84	33.64	5.14	8.60	13.73	18.79	74.41	17.70
16	E1a_E2a	KnownJunction	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.86	2.22	0.00	0.00	0.00	0.00	1.98	1.68
17	ER1d	ExonRegion	0	9.68	0.90	30.33	30.58	94.35	8.16	6.60	0.00	2.45	13.78	9.45	17.62	22.32	2.47	2.72	10.74	6.89	22.00	16.32	4.51	6.09	40.92	20.60	3.39	4.94	10.72	12.99	40.06	12.53
18	E1_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	5.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	0.00	0.00	2.25	1.25
19	E1b_E2a	KnownJunction	0	10.68	3.59	14.35	17.04	61.16	4.91	0.00	2.69	0.00	3.52	2.78	9.94	12.74	2.86	0.00	3.37	7.34	13.87	0.00	0.00	1.76	5.83	13.45	2.57	3.33	7.17	8.10	15.95	5.65
20	E1b_E2b	KnownJunction	0	0.00	0.00	8.60	0.00	7.22	0.00	0.00	0.00	0.00	0.00	0.00	1.63	6.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.69	3.99	0.00	2.87	0.00	1.85	0.00	1.57	4.65
21	E2_Aa	NovelBoundary	0	2.65	0.00	1.54	0.00	7.07	0.00	2.35	0.00	0.00	1.68	0.00	2.74	0.00	0.00	0.00	0.00	0.00	0.00	8.09	3.64	0.00	0.00	0.00	0.00	3.41	0.00	2.04	7.95	1.32
22	E2_Ab	NovelBoundary	0	0.00	0.00	1.22	0.00	18.72	3.49	0.00	0.00	0.00	0.00	0.00	1.78	0.00	0.00	0.00	0.00	4.19	0.00	0.00	0.00	0.00	1.94	0.00	0.00	1.86	0.00	0.00	0.00	0.00
23	ER2a	ExonRegion	0	10.72	3.28	18.70	23.16	75.55	9.39	2.02	0.00	2.81	8.66	5.95	15.67	15.37	4.54	0.00	4.22	9.18	13.19	6.03	3.75	4.04	20.13	15.37	2.51	4.76	8.12	12.21	22.01	11.18
24	ER2b	ExonRegion	0	12.99	4.22	10.57	10.00	36.06	16.40	7.83	2.27	4.93	8.22	5.58	10.00	19.26	6.41	15.20	14.62	6.52	36.37	22.23	7.36	4.25	44.42	13.54	7.26	5.19	12.61	3.86	16.00	11.91
25	E2a_E3a	KnownJunction	0	10.68	12.41	14.18	20.28	17.98	19.72	19.85	6.92	2.83	16.58	11.70	16.08	46.56	6.20	24.72	30.91	7.36	0.00	0.00	15.22	13.36	39.82	30.78	11.90	10.99	7.94	9.34	45.43	16.31
26	E2a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	I2_SR2	SilentIntronRegion	0	4.46	0.00	0.00	0.00	0.00	1.87	0.62	0.00	0.60	0.00	0.00	1.07	0.93	0.00	0.00	0.00	0.72	0.16	0.00	0.00	2.06	0.00	0.00	0.00	2.39	0.00	0.67	0.82	0.00
28	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	5.10	0.00	0.00	0.00	0.00	0.00	1.36	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.00	0.00	4.13	0.00	2.93	0.00	0.00	0.00	2.11	0.00
29	ER3a	ExonRegion	0	10.78	10.01	26.55	14.00	43.00	13.68	6.09	3.56	5.79	16.58	13.99	22.12	26.46	5.96	4.60	18.48	8.77	35.71	29.63	6.63	11.06	29.61	26.20	7.67	6.85	12.44	14.93	49.29	23.18
30	E3_Da	NovelBoundary	0	8.26	0.00	4.48	0.00	0.00	3.80	0.00	0.00	1.25	2.04	0.00	0.00	0.00	2.35	16.74	0.00	6.12	0.00	8.09	2.98	3.53	2.14	0.00	0.00	0.00	0.00	0.00	4.40	1.68
31	E3a_E4a	KnownJunction	0	13.39	16.77	34.61	39.47	145.75	15.35	10.70	7.46	9.26	18.57	11.70	18.79	9.87	11.10	0.00	27.85	10.96	64.73	40.46	11.33	2.05	39.53	22.61	10.95	12.16	28.75	28.58	82.85	29.38
32	I3	Intron	0	4.29	1.61	1.67	0.00	4.88	2.06	1.01	0.00	1.12	0.00	0.00	0.00	0.00	0.91	0.00	2.13	0.00	2.89	3.19	1.38	0.00	2.70	0.00	2.15	1.43	1.57	3.66	5.71	2.01
33	I3_AR1	ActiveIntronRegion	0	4.37	1.64	1.69	0.00	4.98	2.10	1.03	0.00	1.15	0.00	0.00	0.00	0.00	0.93	0.00	2.18	0.00	2.95	3.26	1.41	0.00	2.76	0.00	2.19	1.46	1.60	3.72	5.82	2.05
34	E4_Aa	NovelBoundary	0	7.37	0.00	7.57	0.00	14.00	3.07	0.00	0.00	0.00	0.00	2.85	1.87	1.62	0.93	0.00	0.00	8.42	14.64	8.09	0.00	0.00	0.00	2.36	2.93	4.89	0.00	0.00	8.18	9.41
35	ER4a	ExonRegion	0	38.88	19.54	57.33	47.30	140.34	28.72	13.99	11.36	8.33	14.49	17.26	23.78	41.40	15.00	12.49	18.04	12.04	53.37	55.58	15.49	15.16	78.08	28.07	15.94	21.12	10.79	18.67	59.89	30.43
36	E4_Da	NovelBoundary	0	13.15	4.65	0.00	8.20	13.56	3.68	7.84	0.00	4.32	5.63	0.00	2.62	0.00	3.01	0.00	14.00	7.36	19.14	24.28	11.08	0.00	2.48	0.00	0.00	1.93	1.80	0.00	14.38	6.50
37	E4a_E5a	KnownJunction	0	49.13	35.58	64.83	127.26	144.13	34.88	5.09	11.65	17.51	19.93	33.98	34.67	32.74	19.76	0.00	24.63	6.87	42.64	40.46	11.33	23.67	94.85	43.39	20.88	24.28	17.59	13.42	54.82	33.90
38	I4	Intron	0	12.31	1.48	4.99	8.23	7.85	9.47	5.56	1.27	2.71	2.32	0.00	4.39	2.68	2.08	2.52	5.70	7.20	12.47	16.88	3.80	3.28	1.66	0.00	1.48	2.30	1.81	1.26	13.11	0.31
39	I4_AR1	ActiveIntronRegion	0	12.80	1.36	5.61	6.89	9.65	9.73	5.83	1.58	3.33	2.60	0.00	4.93	2.72	2.48	3.22	6.18	7.36	12.38	17.11	4.51	3.80	1.49	0.00	1.89	2.60	2.01	1.61	14.28	0.39
40	I4_SR1	SilentIntronRegion	0	10.90	2.00	2.88	13.67	1.41	8.91	4.78	0.16	0.46	1.38	0.00	2.55	2.60	0.69	0.00	4.13	6.90	13.35	16.73	1.28	1.43	2.35	0.00	0.00	1.27	1.13	0.00	9.25	0.00
41	E5_Aa	NovelBoundary	0	30.97	0.00	5.95	0.00	20.63	3.38	0.00	2.54	1.37	3.64	0.00	5.00	2.87	0.00	17.14	6.35	6.60	4.62	16.18	0.00	3.73	0.00	0.00	5.38	3.75	7.98	2.19	5.48	3.14
42	ER5a	ExonRegion	0	50.92	33.43	74.20	67.11	164.35	56.31	24.16	17.98	24.61	38.59	44.65	57.21	91.63	28.89	24.72	39.90	36.96	69.13	96.64	35.12	32.42	123.63	58.61	36.97	40.09	42.62	54.27	122.07	57.17
43	E5_Da	KnownBoundary	1	64.71	9.70	63.71	97.49	226.22	82.72	5.21	18.46	29.87	36.99	35.05	53.13	108.53	27.67	26.71	30.45	33.99	36.99	97.11	26.71	26.99	118.29	50.38	39.00	58.00	46.69	46.72	126.93	60.88
44	E5a_E6a	KnownJunction	0	0.00	9.21	19.68	0.00	13.26	6.75	0.00	0.00	6.36	5.47	9.46	2.92	6.08	1.06	0.00	10.33	0.95	0.00	8.09	10.17	0.00	0.00	4.38	3.05	5.30	8.11	15.36	7.73	2.05
45	E5a_E7a	KnownJunction	0	8.08	0.00	1.54	8.63	0.00	0.00	2.12	0.00	0.00	0.00	1.55	0.00	1.97	1.26	0.00	6.43	0.00	4.62	0.00	0.00	0.00	4.38	2.02	0.00	0.00	0.00	0.00	16.67	3.37
46	ER5b	ExonRegion	0	43.09	23.04	54.78	54.47	164.77	48.43	14.78	15.41	25.80	28.14	39.50	41.56	96.88	22.61	19.03	37.64	22.31	51.05	82.34	21.55	27.05	93.81	43.56	38.72	42.57	40.52	59.38	87.98	60.43
47	E5_Db	NovelBoundary	0	5.01	4.85	8.25	0.00	32.86	5.03	9.90	2.29	3.01	8.03	1.23	6.90	2.67	2.24	25.91	6.12	6.10	23.12	8.09	0.00	7.34	9.38	2.51	11.48	11.52	11.76	0.00	12.58	1.52
48	E5b_E6a	KnownJunction	0	31.68	8.92	38.17	58.02	122.17	44.20	10.81	4.23	13.43	19.65	54.73	36.96	74.64	17.46	8.37	3.82	10.04	41.61	40.46	19.35	29.40	82.02	45.61	32.84	31.52	28.92	72.36	55.72	42.49
49	E5b_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.43	0.00	8.09	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.00	13.70	1.91
50	I5	Intron	0	5.21	4.48	10.15	14.51	23.72	12.80	4.08	2.98	5.45	5.84	9.15	1.25	2.36	4.02	7.47	6.75	9.06	12.48	19.40	5.58	7.51	6.57	0.73	6.09	6.36	0.64	0.74	28.37	5.16
51	I5_SR1	SilentIntronRegion	0	5.29	4.56	10.32	14.74	24.10	13.00	4.13	3.03	5.54	5.94	9.30	1.27	2.40	4.09	7.59	6.86	9.20	12.66	19.71	5.67	7.63	6.67	0.74	6.19	6.46	0.65	0.75	28.81	5.24
52	E6_Aa	NovelBoundary	0	10.26	8.92	11.91	9.27	13.56	5.52	2.92	9.80	2.80	7.15	7.24	4.04	6.31	0.00	18.34	10.10	11.16	9.25	24.28	2.98	5.94	4.23	2.41	7.84	1.59	1.89	0.00	23.45	4.42
53	ER6a	ExonRegion	0	35.11	20.89	51.63	72.80	129.04	53.65	16.35	12.52	16.45	30.58	33.20	44.21	79.14	17.87	10.57	26.53	15.55	51.67	85.97	23.39	31.78	81.30	41.84	30.90	29.46	33.89	41.52	68.74	37.94
54	E6_Da	NovelBoundary	0	2.42	0.00	6.38	0.00	0.00	1.65	0.00	0.00	4.48	1.80	4.75	0.00	3.47	0.00	7.77	3.82	2.66	0.00	8.09	0.00	4.01	2.33	0.00	3.05	1.93	0.00	0.00	14.74	0.00
55	E6a_E7a	KnownJunction	0	29.02	17.94	59.50	72.04	182.89	34.84	9.67	11.60	11.75	28.88	36.76	34.19	51.94	14.36	0.00	19.20	14.77	23.12	24.05	25.55	29.08	64.66	29.06	21.53	28.07	37.03	44.58	64.16	38.69
56	I6	Intron	0	3.34	5.47	2.28	0.00	8.56	5.35	1.57	1.43	3.92	1.41	0.69	0.72	1.64	1.32	6.97	1.93	3.20	3.75	15.55	4.14	1.39	2.81	0.35	1.67	1.11	2.75	1.43	9.52	4.03
57	I6_SR1	SilentIntronRegion	0	3.36	5.51	2.30	0.00	8.62	5.39	1.58	1.44	3.95	1.42	0.70	0.73	1.65	1.33	7.02	1.95	3.22	3.78	15.67	4.17	1.40	2.83	0.35	1.69	1.12	2.77	1.44	9.59	4.06
58	E7_Aa	NovelBoundary	0	7.96	18.23	2.96	20.49	0.00	3.41	5.09	4.23	2.59	3.71	0.00	1.66	1.69	3.28	0.00	0.00	3.58	9.25	16.18	6.53	13.04	4.47	0.00	12.14	3.52	0.00	2.53	6.38	4.69
59	ER7a	ExonRegion	0	38.09	23.45	78.29	72.26	167.69	49.81	19.68	9.18	19.55	39.31	38.28	43.62	80.33	18.58	14.88	29.36	19.01	57.04	86.39	23.15	30.88	91.51	37.71	30.94	31.02	37.83	55.07	95.53	54.07
60	E7_Da	NovelBoundary	0	0.00	0.00	2.77	0.00	11.79	1.61	2.63	0.00	0.00	1.76	0.00	1.20	1.43	1.37	0.00	0.00	0.00	0.00	24.05	0.00	3.13	0.00	0.00	0.00	0.00	0.00	5.02	10.74	1.75
61	E7a_E8a	KnownJunction	0	45.42	37.91	66.45	28.47	128.80	44.51	10.58	2.49	20.04	25.17	16.64	27.62	87.03	17.50	9.97	29.45	16.03	71.54	72.83	24.73	32.01	76.96	47.67	16.93	15.23	23.90	45.47	64.79	48.33
62	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.11	1.52	1.39	0.00	1.93	0.00	3.82	0.00	0.00	0.00	0.00	0.00	2.14	0.00	0.00	0.00	0.00	4.17	8.36	0.00
63	I7	Intron	0	1.21	0.00	0.95	8.13	2.77	0.00	2.28	1.04	0.00	0.82	0.00	0.70	0.00	0.00	5.73	0.00	0.00	1.09	5.43	0.00	0.00	1.02	0.00	2.44	0.81	0.00	0.00	0.92	0.00
64	I7_SR1	SilentIntronRegion	0	1.24	0.00	0.97	8.31	2.83	0.00	2.34	1.07	0.00	0.84	0.00	0.72	0.00	0.00	5.86	0.00	0.00	1.12	5.55	0.00	0.00	1.04	0.00	2.49	0.83	0.00	0.00	0.94	0.00
65	E8_Aa	NovelBoundary	0	2.77	0.00	4.41	10.78	21.22	1.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	0.00	3.40	4.62	8.09	0.00	5.82	4.96	0.00	0.00	1.48	0.00	0.00	4.22	1.45
66	ER8a	ExonRegion	0	35.87	20.11	52.76	61.97	113.14	39.23	13.57	10.37	19.88	22.10	31.25	41.74	84.30	21.50	13.94	22.81	16.22	53.41	63.75	25.42	29.02	86.83	34.15	36.63	23.38	25.80	44.01	63.65	38.81
67	E8_Da	NovelBoundary	0	5.84	0.00	2.47	0.00	6.93	3.53	0.00	2.14	1.34	3.99	0.00	0.00	2.67	2.26	8.77	0.00	3.69	5.39	0.00	2.98	1.52	4.81	0.00	2.93	0.00	0.00	0.00	4.00	0.00
68	E8a_E9a	KnownJunction	0	43.30	26.56	48.58	55.00	88.28	37.79	16.94	7.12	33.59	21.89	39.57	41.57	87.16	17.39	25.91	14.15	14.34	69.48	97.11	25.97	30.36	73.56	39.35	50.66	24.32	29.83	43.24	75.62	33.48
69	I8	Intron	0	1.10	2.04	1.43	2.45	4.17	4.92	0.34	0.00	1.72	0.99	1.01	0.63	0.66	1.54	2.66	0.30	1.53	2.68	3.81	2.22	3.89	1.23	0.31	3.67	0.98	0.54	4.37	5.00	1.37
70	I8_SR1	SilentIntronRegion	0	1.10	2.06	1.44	2.46	4.19	4.96	0.35	0.00	1.73	0.99	1.02	0.64	0.67	1.55	2.68	0.31	1.54	2.70	3.84	2.23	3.92	1.24	0.31	3.69	0.98	0.54	4.40	5.04	1.37
71	E9_Aa	NovelBoundary	0	2.30	0.00	4.14	0.00	0.00	1.65	0.00	0.00	2.83	3.71	0.00	0.00	0.00	2.04	15.75	0.00	2.77	0.00	24.28	0.00	0.00	0.00	0.00	2.69	0.00	0.00	0.00	0.00	0.00
72	ER9a	ExonRegion	0	36.56	27.29	53.29	57.61	111.26	32.95	15.17	11.04	21.10	24.84	26.85	36.45	75.25	19.89	13.79	27.41	25.28	47.00	83.58	21.20	17.53	73.35	37.79	34.05	28.25	23.97	32.23	73.35	47.29
73	E9_Da	KnownBoundary	0	60.52	25.21	65.10	80.24	142.07	33.38	21.57	11.00	29.78	30.28	19.55	51.78	92.60	16.75	19.33	38.78	34.62	60.11	64.74	25.22	27.88	90.04	31.47	41.63	38.95	19.78	41.40	94.00	39.39
74	ER9b	ExonRegion	0	30.40	34.49	50.65	59.87	147.86	53.08	19.50	16.18	37.64	41.56	49.74	41.20	99.70	20.31	30.61	31.22	24.28	43.72	90.35	22.67	31.83	72.59	35.61	41.42	42.89	31.33	88.13	92.51	67.34
75	ER9c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00