Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	BST2	Gene	0	652.24	798.10	956.44	2846.09	2797.71	665.52	1111.64	1052.31	819.13	869.93	543.94	194.12	691.13	578.47	858.17	535.03	521.26	1053.71	547.33	2336.19	391.83	1262.07	733.24	1456.34	881.47	678.83	524.47	1030.41	2307.45
2	416178	Transcript	0	2.02	3.27	16.77	15.78	10.24	2.49	4.01	3.70	1.04	10.60	1.12	5.76	2.82	0.63	15.25	6.39	1.16	30.24	23.22	7.97	16.56	1.82	2.06	4.19	2.86	1.46	1.33	8.17	5.11
3	446020	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	252593	Transcript	0	868.32	1093.91	1088.33	1774.99	1494.23	818.96	1654.34	1368.85	1454.78	1078.09	678.65	218.17	855.09	755.99	1796.60	694.18	625.80	1478.96	685.34	2913.36	406.20	1499.07	876.31	1718.52	982.28	593.75	546.70	1082.27	2354.33
5	IG28	Intergenic	0	3.49	5.24	1.81	31.12	39.75	7.46	22.97	6.99	4.27	21.15	5.81	1.34	4.92	2.46	2.50	5.38	0.00	11.50	13.87	10.47	10.06	13.69	11.77	3.50	6.98	5.12	0.99	8.84	5.10
6	IG28_AR1	ActiveIntergenicRegion	0	4.15	4.31	1.85	33.97	40.58	6.67	23.52	9.21	5.48	22.44	4.91	1.13	5.68	2.32	1.98	5.75	0.00	13.02	16.03	12.47	9.27	11.53	11.23	3.90	8.25	6.29	0.65	9.85	5.68
7	IG28_SR1	SilentIntergenicRegion	0	2.92	6.50	1.81	29.25	40.64	8.65	23.41	4.90	3.14	20.70	7.06	1.63	4.31	2.72	3.18	5.18	0.00	10.36	12.03	8.75	11.38	16.68	12.90	3.23	5.91	4.07	1.42	8.15	4.70
8	ER1a	ExonRegion	1	1.59	6.57	48.97	44.58	25.87	3.59	5.66	4.81	2.75	28.13	1.00	14.76	5.87	0.00	42.64	15.59	0.00	63.92	56.94	13.69	44.45	0.00	3.44	2.01	3.46	2.33	3.66	16.25	0.00
9	ER1b	ExonRegion	0	281.04	394.72	850.95	3683.37	4846.12	330.59	461.51	330.07	261.57	714.80	478.62	226.67	331.91	288.10	323.27	359.95	227.60	922.08	508.89	1130.81	498.01	769.43	519.22	618.08	566.31	590.49	518.84	721.42	1712.11
10	E1_Ac	KnownBoundary	0	1141.25	1551.59	2154.67	16510.37	19750.72	1187.75	1949.65	1471.38	1055.03	1867.42	1702.16	395.41	1380.77	1070.01	1288.80	1498.23	1028.90	3708.04	1824.63	4359.07	935.05	2898.13	1867.10	2324.85	1948.70	2038.64	1900.93	2773.08	5819.62
11	ER1c	ExonRegion	0	902.24	1146.90	1062.19	3033.49	3680.08	1063.77	1553.94	1532.11	983.28	1431.77	996.77	362.26	1052.64	876.11	843.62	860.33	907.90	1500.63	839.13	3044.11	710.68	1904.78	1267.48	2021.43	1443.91	1371.05	938.61	1896.12	4377.93
12	E1_Da	NovelBoundary	0	2.30	0.00	1.54	0.00	7.37	0.00	0.00	0.00	2.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.88	4.62	0.00	8.10	2.05	0.00	0.00	0.00	0.00	2.02	0.00	1.93	0.00
13	E1a_E2a	KnownJunction	1	739.26	859.27	1752.81	4229.29	8809.13	849.07	1156.83	1424.40	681.59	729.73	398.69	328.40	687.39	739.94	795.68	530.98	1005.13	1084.34	420.36	2831.29	400.18	1424.00	807.79	2100.48	924.55	744.65	1421.20	2042.41	2936.19
14	E1a_E3a	NovelJunction	0	5.66	0.00	1.42	8.63	5.89	0.00	5.55	0.00	1.64	0.00	0.00	0.00	1.31	4.21	0.00	0.00	2.45	0.00	0.00	11.41	0.00	6.22	5.02	4.79	5.64	8.07	4.67	0.00	1.75
15	E1a_E4a	NovelJunction	0	5.96	4.56	3.09	10.57	14.00	3.91	7.38	6.97	9.44	6.11	3.13	0.00	4.87	4.54	0.00	0.00	8.55	10.02	16.18	7.28	0.00	6.81	1.97	14.71	7.16	1.76	9.99	4.49	8.52
16	I1	Intron	0	7.95	1.54	1.10	3.43	13.14	2.38	1.45	1.98	1.84	1.55	1.21	0.44	0.23	1.14	2.69	2.23	2.32	5.36	5.54	6.24	2.22	0.00	1.62	3.34	0.34	0.47	0.00	0.97	0.92
17	I1_AR1	ActiveIntronRegion	0	6.28	0.10	1.09	2.80	3.18	3.16	0.79	0.72	2.16	0.98	0.31	0.16	0.00	1.41	2.23	1.94	2.74	5.63	5.82	6.56	1.44	0.00	1.31	2.23	0.33	0.20	0.00	1.48	0.52
18	I1_SR1	SilentIntronRegion	0	10.32	3.54	1.42	4.06	26.29	1.74	1.81	3.84	1.86	2.14	2.03	0.78	0.49	1.15	3.30	2.73	1.31	4.73	6.31	7.25	3.25	0.00	1.81	5.18	0.25	0.89	0.00	0.69	1.27
19	I1_AR2	ActiveIntronRegion	0	6.04	0.00	0.00	3.69	5.03	1.71	2.77	0.26	0.59	1.74	1.80	0.35	0.22	0.00	2.38	1.58	4.36	6.64	1.74	1.42	1.58	0.00	2.19	1.11	0.74	0.00	0.00	0.00	1.25
20	E2_Aa	NovelBoundary	0	11.44	0.00	5.48	0.00	59.54	3.91	5.03	4.33	1.86	1.56	0.00	0.00	0.00	1.04	0.00	0.00	2.41	9.25	8.09	3.97	2.05	0.00	2.22	0.00	0.00	6.31	0.00	0.00	0.00
21	ER2a	ExonRegion	0	869.19	1066.81	3227.18	7258.08	9245.08	768.11	1321.91	1683.98	794.38	881.28	580.20	246.49	734.78	798.73	943.58	559.25	722.29	1172.32	695.22	3526.64	332.07	1699.74	739.20	2276.20	979.80	715.12	884.49	1524.62	2467.65
22	E2_Da	NovelBoundary	0	2.54	0.00	3.26	0.00	7.37	1.42	0.00	0.00	0.00	0.00	0.00	0.00	1.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.22	2.99	1.40	0.00	1.84	0.00	0.00
23	E2a_E3a	KnownJunction	0	948.66	1349.36	3219.40	9348.53	7348.09	797.70	1742.93	1845.02	1268.41	1191.06	812.98	227.19	937.18	838.30	1413.57	815.48	660.15	1566.46	930.18	3516.45	379.68	1885.33	919.69	2345.01	1156.94	733.75	808.58	1243.03	2442.07
24	I2	Intron	0	4.75	0.00	0.00	0.00	0.00	0.00	0.00	1.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.90	0.00
25	I2_SR2	SilentIntronRegion	0	5.61	0.00	0.00	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.07	0.00
26	E3_Aa	NovelBoundary	0	5.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.60	0.00	0.00	0.00	0.00	8.37	0.00	3.98	4.62	8.09	0.00	0.00	1.90	0.00	11.01	0.00	0.00	0.00	0.00	1.32
27	ER3a	ExonRegion	0	1045.03	1291.67	2275.05	12248.34	10299.06	965.00	1709.55	1788.32	999.23	1294.12	890.63	260.90	1111.89	971.57	1241.50	825.18	785.70	1703.49	1009.78	3774.36	465.89	1923.85	1009.90	2487.96	1476.48	804.13	829.32	1390.26	2960.96
28	E3_Da	NovelBoundary	0	25.48	0.00	1.49	0.00	13.56	1.69	0.00	4.98	7.49	2.04	4.84	0.00	0.00	3.30	0.00	6.96	13.64	4.50	32.37	22.25	1.64	0.00	0.00	2.93	0.00	2.15	0.00	2.25	6.37
29	E3a_E4a	KnownJunction	0	1096.54	1456.10	1179.52	12119.53	9636.32	1340.91	2094.35	2000.39	1023.17	1544.42	928.73	296.38	1197.16	1068.75	1627.64	910.34	862.62	1834.24	1058.54	4282.24	664.59	2022.29	1176.77	2534.56	1535.52	1095.04	922.68	1605.13	3525.51
30	I3	Intron	0	3.96	0.39	0.28	2.41	1.64	1.38	0.34	0.31	1.13	0.48	0.60	0.21	0.22	1.14	4.79	0.42	2.99	3.66	3.75	8.06	2.15	2.12	0.30	2.17	0.24	1.05	0.92	1.64	1.01
31	I3_SR1	SilentIntronRegion	0	4.00	0.39	0.28	2.43	1.66	1.40	0.34	0.31	1.14	0.49	0.60	0.21	0.22	1.15	4.84	0.42	3.02	3.70	3.79	8.14	2.17	2.14	0.31	2.19	0.24	1.07	0.93	1.66	1.02
32	E4_Aa	NovelBoundary	0	8.26	0.00	1.54	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	1.42	0.00	0.00	0.00	0.00	7.88	0.00	0.00	0.00	3.25	0.00	0.00	2.45	0.00	0.00	0.00	0.00	3.04
33	ER4a	ExonRegion	0	1178.13	1509.15	924.93	8195.49	6248.49	1572.68	2605.78	2103.28	1086.22	1798.57	1012.98	312.35	1303.69	1076.88	1494.04	975.66	820.85	1939.40	1120.35	4051.00	748.46	2165.58	1216.93	2713.69	1841.92	1219.18	828.29	1674.55	3810.74
34	E4_Da	KnownBoundary	0	1123.91	1376.02	780.43	3658.14	2181.24	1117.26	1714.10	2084.69	979.44	1160.46	681.98	259.48	1009.43	920.27	1451.25	817.01	698.17	1838.09	833.07	3910.10	604.42	1940.56	1027.40	2271.85	1385.23	718.90	603.77	995.68	2907.56
35	E4a_E6a	KnownJunction	0	0.00	0.00	0.92	0.00	0.00	2.84	4.23	5.52	0.00	1.48	1.17	2.23	1.18	0.82	0.00	0.00	0.00	4.75	8.09	0.00	0.00	1.80	1.82	6.64	2.77	1.59	0.00	3.32	4.89
36	ER4b	ExonRegion	0	956.82	1132.59	1033.64	2253.76	1261.59	794.27	1417.37	1697.92	980.04	1020.65	576.42	218.09	827.78	824.51	1289.04	686.20	625.07	1434.23	685.27	3335.48	404.28	1732.84	802.26	1926.57	1043.41	550.72	458.74	871.01	2363.49
37	E4_Db	NovelBoundary	0	549.21	692.42	757.19	1285.53	1014.06	431.71	1094.58	848.26	845.79	603.58	356.27	136.50	522.63	493.96	1245.35	446.37	459.55	714.84	419.23	1802.76	242.67	747.69	465.61	1037.26	603.51	291.82	284.37	609.41	1462.17
38	E4_Dc	NovelBoundary	0	2.83	4.46	3.09	0.00	7.37	0.00	0.00	2.34	3.08	8.11	0.00	0.00	1.62	1.13	19.73	0.00	2.45	4.62	8.09	4.13	9.91	4.76	0.00	8.43	3.52	2.19	0.00	2.25	1.58
39	E4c_E5a	KnownJunction	0	991.31	1347.90	1242.06	2200.49	1903.60	1008.30	2052.18	1684.77	1795.91	1320.24	868.94	266.47	989.75	901.35	2386.65	860.46	754.38	1876.88	857.58	3251.32	475.79	1761.84	1038.82	1982.52	1142.84	664.14	684.33	1288.77	2744.02
40	ER4c	ExonRegion	0	992.14	1215.42	1232.78	1819.39	1591.11	900.96	1871.29	1584.56	1468.59	1207.47	794.67	259.66	926.02	887.33	1889.65	765.63	715.03	1597.84	783.27	3154.14	444.27	1609.73	957.65	1825.61	1104.87	641.75	591.34	1175.48	2569.27
41	I4	Intron	0	1.81	1.17	2.48	0.00	1.03	0.29	0.43	0.39	2.02	3.06	0.00	0.39	0.68	0.38	0.98	0.90	0.95	5.37	4.06	1.75	2.72	0.76	1.91	5.46	1.21	1.33	0.00	2.07	2.12
42	I4_SR1	SilentIntronRegion	0	2.31	1.49	3.16	0.00	1.32	0.37	0.54	0.50	2.57	3.51	0.00	0.50	0.87	0.49	1.24	1.15	1.21	6.84	4.31	2.23	3.46	0.97	2.44	6.97	1.54	1.70	0.00	2.64	2.71
43	I4_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E5_Aa	NovelBoundary	0	8.20	9.31	5.06	0.00	12.08	7.14	9.84	3.98	1.37	8.79	0.00	0.00	6.59	8.97	24.72	0.00	18.12	9.25	16.18	7.69	1.89	0.00	6.94	5.92	0.00	9.61	6.51	0.00	8.91
45	ER5a	ExonRegion	0	621.50	718.41	790.15	1305.08	987.97	547.63	1039.55	837.23	1099.86	706.57	372.33	128.37	649.50	479.30	1113.49	456.46	408.01	962.15	415.17	2334.64	298.53	1125.65	632.44	1347.44	699.13	475.37	364.44	782.56	1749.71
46	E5_Da	NovelBoundary	0	36.34	88.13	44.62	210.52	160.05	23.52	58.19	61.91	85.39	45.42	24.96	4.64	34.17	29.34	171.41	34.12	31.20	73.98	23.83	160.93	19.65	67.82	40.93	71.90	49.44	40.38	40.85	73.73	106.60
47	I5	Intron	0	5.03	5.03	1.00	3.89	3.11	3.69	1.89	3.60	2.78	3.09	0.61	0.37	1.06	2.03	9.47	5.17	9.62	30.76	5.33	12.67	5.42	2.74	1.55	4.76	3.82	3.22	0.17	6.94	17.30
48	I5_AR1	ActiveIntronRegion	0	0.00	0.00	0.64	0.00	0.00	1.37	0.00	1.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.14	6.24	0.00	0.00	0.00	3.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	I5_SR1	SilentIntronRegion	0	6.91	5.56	1.19	4.91	3.35	4.36	2.51	4.39	3.55	3.81	0.57	0.56	1.40	2.33	8.56	3.78	9.92	26.88	6.08	11.35	5.18	3.56	1.65	6.94	4.21	3.83	0.19	6.58	16.10
50	I5_AR2	ActiveIntronRegion	0	1.96	3.52	0.33	1.40	2.79	2.60	0.92	2.89	1.02	0.94	0.62	0.24	0.80	0.74	8.40	4.36	6.04	30.99	5.42	11.24	4.47	1.88	1.06	1.67	3.26	1.74	0.00	4.90	7.12
51	I5_SR2	SilentIntronRegion	0	0.00	0.00	0.00	0.00	14.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.68	0.00	0.00	0.00	4.78	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	2.01
52	I5_SR3	SilentIntronRegion	0	3.78	4.90	1.31	3.01	2.43	3.81	1.43	2.35	3.05	3.73	0.51	0.00	0.60	2.40	13.32	8.44	12.52	40.41	3.86	15.78	7.55	1.66	1.87	2.90	3.71	3.89	0.39	9.56	28.48
53	I5_AR4	ActiveIntronRegion	0	3.28	6.18	0.71	6.24	4.17	1.47	1.31	3.14	1.36	2.36	1.27	0.26	0.55	2.74	9.58	10.00	10.48	35.08	3.41	19.85	4.40	1.92	1.32	2.31	2.89	1.07	0.00	9.21	27.89
54	E6_Aa	NovelBoundary	0	13.27	18.52	1.07	0.00	0.00	0.00	0.00	2.29	0.00	0.00	1.30	0.00	3.60	1.86	0.00	0.00	11.84	13.61	0.00	3.39	0.00	4.42	0.00	0.00	1.67	0.00	0.00	3.82	18.03
55	ER6a	ExonRegion	0	4.46	3.23	0.42	2.76	4.85	1.03	2.14	0.75	0.36	2.19	1.19	0.28	1.41	1.08	3.12	3.58	3.47	22.06	4.62	10.23	5.23	3.67	0.93	3.93	2.36	0.46	0.34	4.94	10.44
56	IG27_AR1	ActiveIntergenicRegion	0	1.95	0.40	0.62	0.00	1.21	0.68	0.49	1.36	0.14	0.53	0.73	0.15	1.20	0.67	1.25	1.43	1.96	5.46	0.79	3.69	4.23	0.00	0.67	0.80	0.88	1.16	0.00	2.28	4.31