Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HSBP1L1	Gene	0	50.31	22.70	4.95	16.86	89.59	40.13	42.20	44.81	40.98	16.41	7.45	7.47	49.43	30.62	46.10	40.49	40.54	52.63	43.36	264.12	43.69	94.13	99.90	79.42	118.58	19.13	34.00	107.39	22.16
2	451882	Transcript	0	42.55	20.83	2.91	13.23	93.07	39.46	32.37	38.44	36.73	17.47	6.96	7.09	52.23	27.77	27.85	44.61	32.38	40.25	53.70	234.94	38.65	70.78	83.59	70.98	107.99	13.52	30.97	105.63	17.50
3	431107	Transcript	0	0.36	0.00	0.00	0.00	0.37	1.80	1.08	0.31	0.17	0.11	0.40	0.00	1.40	0.30	0.00	0.84	0.37	1.47	0.00	4.00	0.00	0.07	0.30	0.76	1.91	0.00	0.14	0.60	0.00
4	ER1a	ExonRegion	0	6.67	0.49	1.21	1.80	44.63	2.37	8.42	1.97	3.99	3.80	0.11	1.19	2.51	1.88	13.73	11.96	1.48	13.23	7.19	23.45	7.89	10.67	16.57	5.22	6.72	5.06	4.84	25.52	5.99
5	E1_Ab	KnownBoundary	1	27.13	3.39	9.19	16.82	165.20	12.81	19.74	4.43	13.64	12.46	1.61	6.96	11.30	2.99	8.37	27.08	7.95	23.50	16.18	78.89	16.85	40.84	29.21	16.87	19.25	9.31	15.90	113.90	14.39
6	ER1b	ExonRegion	0	23.89	2.14	4.70	25.98	104.65	20.85	20.04	9.82	7.07	7.08	2.04	3.15	19.51	6.54	9.84	19.57	16.79	18.22	9.91	73.95	23.60	49.04	66.55	16.83	25.81	7.31	13.36	64.41	10.77
7	E1a_E2a	KnownJunction	0	17.16	3.68	1.35	9.49	42.74	17.42	10.41	4.83	13.13	3.28	3.16	2.59	18.15	11.79	26.31	14.46	10.33	9.25	8.09	126.36	29.52	48.86	39.15	41.87	26.75	9.61	9.49	46.19	1.25
8	E1a_E6a	NovelJunction	0	5.07	0.00	0.00	0.00	0.00	0.00	2.86	2.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.00	3.65	4.28	4.28	0.00	0.00	0.00	0.00	0.00	0.00
9	I1	Intron	0	0.48	1.85	0.00	1.07	2.18	1.64	0.75	0.96	1.17	1.61	0.09	0.50	0.68	2.02	1.44	1.74	10.34	3.73	1.43	5.37	1.70	0.27	1.62	2.72	3.41	1.40	0.00	2.43	1.89
10	I1_SR1	SilentIntronRegion	0	0.50	1.94	0.00	1.12	2.29	1.66	0.79	1.00	1.22	1.69	0.09	0.53	0.71	2.12	1.35	1.73	10.83	3.62	1.49	5.62	1.72	0.28	1.69	2.76	3.57	1.47	0.00	2.54	1.98
11	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	18.57	7.83	2.63	2.39	10.81	5.43	1.20	6.30	1.88	5.56	0.00	6.96	39.12	4.62	16.18	0.00	1.85	2.14	0.00	5.98	5.30	2.06	9.54	12.99	3.33
12	I1_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.48	2.18	0.00	6.40	0.00	0.00	1.28	0.00	0.00	2.08	0.00	0.00	0.00	0.00	0.00
13	ER2a	ExonRegion	0	54.39	27.90	1.16	11.46	69.00	45.45	32.91	22.20	23.12	16.14	9.18	7.66	46.12	22.92	35.61	34.71	10.21	47.98	47.62	268.27	39.45	101.46	77.24	63.89	120.62	10.84	20.88	80.82	11.00
14	E2_Da	NovelBoundary	0	0.00	7.95	0.00	0.00	0.00	16.15	12.47	0.00	23.05	1.92	5.31	1.11	3.09	1.15	16.74	14.00	18.89	23.12	8.09	36.88	31.37	9.63	23.39	8.37	14.70	8.75	0.00	10.33	9.28
15	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E2a_E4a	KnownJunction	0	33.39	21.72	1.20	8.41	45.39	47.19	26.38	35.98	31.94	18.10	5.25	7.38	56.43	27.30	18.34	41.92	11.10	28.38	56.65	197.90	42.24	58.29	76.19	76.98	114.49	12.83	7.40	78.99	15.65
17	E2a_E4b	NovelJunction	0	6.31	0.00	0.00	0.00	0.00	1.96	0.00	2.69	3.35	2.20	0.00	0.00	5.32	3.77	0.00	0.00	2.77	10.02	0.00	22.08	15.00	5.25	13.25	5.26	3.60	2.36	0.00	4.76	8.19
18	I2	Intron	0	6.67	3.45	0.00	0.00	6.08	5.13	5.01	4.58	4.89	1.80	0.00	1.54	1.62	2.53	0.00	16.97	2.79	10.98	5.96	16.18	4.44	1.12	5.62	13.38	8.89	0.00	17.09	8.11	4.17
19	I2_AR1	ActiveIntronRegion	0	6.83	3.53	0.00	0.00	6.23	5.26	5.14	4.67	5.01	1.84	0.00	1.58	1.66	2.59	0.00	17.40	2.85	11.26	6.11	16.58	4.55	1.15	5.74	13.71	9.11	0.00	17.51	8.27	4.28
20	ER3a	ExonRegion	0	1.07	0.00	0.00	0.00	0.00	3.44	3.02	0.92	0.00	0.00	1.19	0.00	3.90	0.91	0.00	2.53	1.00	4.09	0.00	7.03	0.00	0.00	0.90	1.08	5.72	0.00	0.00	1.63	0.00
21	I3	Intron	0	4.95	7.76	1.93	7.03	23.39	10.15	7.33	6.48	11.61	4.83	2.61	3.52	4.41	8.01	8.22	13.60	23.43	16.73	12.72	23.54	12.27	7.49	8.35	19.98	15.17	4.53	21.45	18.62	9.26
22	I3_AR1	ActiveIntronRegion	0	6.43	1.61	5.02	3.58	41.51	6.87	5.04	6.44	4.77	5.05	1.19	3.09	2.92	2.95	9.66	10.82	19.32	11.72	11.18	18.46	6.42	6.33	5.42	5.38	13.58	2.36	18.32	15.49	2.00
23	I3_SR1	SilentIntronRegion	0	5.21	7.02	1.87	13.12	19.52	8.84	7.71	6.41	10.87	4.56	1.33	3.28	5.32	9.75	9.29	19.52	27.16	16.91	13.27	21.50	10.15	10.82	8.87	23.64	15.96	5.48	25.29	23.47	11.79
24	I3_AR2	ActiveIntronRegion	0	4.45	9.66	1.30	3.59	22.16	11.83	7.60	6.56	13.69	4.99	3.83	3.81	4.13	7.97	7.20	10.16	21.82	17.78	12.73	26.18	15.10	5.46	8.67	20.75	15.05	4.37	19.56	16.02	9.16
25	E4_Aa	NovelBoundary	1	5.37	0.00	0.00	21.14	0.00	3.11	0.00	4.98	5.66	0.00	1.49	1.54	1.82	2.66	0.00	7.04	7.72	0.00	0.00	0.00	0.00	2.33	6.21	5.20	5.38	5.71	5.67	15.68	1.91
26	E4_Ab	NovelBoundary	0	0.00	8.92	3.06	0.00	14.15	0.00	0.00	0.00	7.98	2.00	0.00	1.54	3.44	3.04	7.77	3.60	13.10	5.01	8.09	22.16	2.05	4.47	4.43	2.63	3.67	0.00	2.34	4.31	1.95
27	ER4a	ExonRegion	0	31.44	22.99	1.12	7.31	49.82	44.45	21.50	30.68	35.58	20.21	9.12	7.42	63.22	26.30	24.27	56.52	14.36	35.48	49.78	234.22	36.61	57.69	78.96	69.55	117.21	9.43	16.48	86.39	9.40
28	ER4b	ExonRegion	0	52.42	25.82	2.74	7.39	105.53	50.21	50.35	57.97	60.36	22.93	8.36	13.26	72.17	36.19	52.78	53.01	50.15	80.18	62.38	300.31	38.61	99.64	145.92	103.51	137.96	16.59	57.04	177.73	35.49
29	E4_Da	NovelBoundary	0	2.95	8.43	1.54	9.06	0.00	6.79	5.44	0.00	12.09	3.99	6.33	4.55	1.59	3.23	0.00	3.06	6.84	4.62	24.28	7.61	14.52	0.00	2.41	0.00	1.63	6.27	0.00	6.34	3.04
30	E4a_E6a	KnownJunction	1	73.08	25.89	3.89	28.26	229.90	51.53	48.17	56.24	52.65	24.29	9.90	10.48	73.85	37.98	16.34	60.43	74.35	56.25	97.11	344.69	45.69	101.12	122.88	88.59	131.04	11.67	81.50	208.35	27.76
31	I4	Intron	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.12	0.00	0.00	0.00	0.00	0.00	0.00	4.28	0.00	0.00	0.00	0.00	2.56	0.00	0.00	0.00	0.00	1.33	0.00	0.00	1.51	0.00
32	I4_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.21	0.00	0.00	0.00	0.00	0.00	0.00	4.44	0.00	0.00	0.00	0.00	2.65	0.00	0.00	0.00	0.00	1.38	0.00	0.00	1.54	0.00
33	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	1.11	0.00	0.22	0.00	0.50	0.32	0.00	0.00	0.29	0.00	0.00	0.00	0.11	0.30	0.00	1.25	0.00	0.20	0.00	1.20	0.00	0.00	0.41	0.18	0.00
34	I5	Intron	0	2.99	3.45	1.17	0.45	8.05	3.75	1.15	3.27	6.69	3.39	1.28	2.70	4.52	5.02	6.59	7.76	18.56	9.57	4.05	8.52	4.25	1.72	4.93	9.14	7.98	2.99	2.90	10.65	4.50
35	I5_SR1	SilentIntronRegion	0	2.99	3.45	1.17	0.46	8.06	3.75	1.15	3.27	6.69	3.39	1.28	2.70	4.53	5.03	6.60	7.77	18.58	9.58	4.06	8.53	4.26	1.72	4.94	9.15	7.99	2.99	2.91	10.66	4.51
36	E6_Aa	NovelBoundary	1	2.77	0.00	4.46	10.78	0.00	6.75	2.52	0.00	12.03	3.75	2.94	13.95	0.00	8.71	24.32	6.35	40.38	18.49	16.18	19.52	4.09	0.00	4.78	19.50	6.93	6.57	9.74	33.47	7.96
37	ER6a	ExonRegion	0	68.19	33.06	7.12	20.38	95.63	51.78	57.38	67.34	59.50	20.96	10.40	8.96	65.17	45.38	66.59	52.22	60.63	67.89	57.74	374.45	60.80	126.13	123.33	114.58	170.52	28.62	44.59	128.91	28.68
38	IG49	Intergenic	0	3.15	3.65	13.03	7.38	24.41	9.59	5.48	7.31	23.80	13.26	19.59	26.54	12.90	12.23	7.51	12.01	8.01	9.15	20.89	3.01	11.11	10.47	8.50	16.28	10.71	16.86	13.86	20.96	5.60
39	IG49_SR1	SilentIntergenicRegion	0	0.77	1.13	0.60	0.00	1.75	3.46	2.90	1.32	11.46	3.11	10.26	12.19	3.26	4.38	5.29	1.53	3.22	5.54	9.15	1.98	2.56	2.59	3.90	11.57	2.57	2.82	3.95	2.34	1.92
40	IG49_AR7	ActiveIntergenicRegion	0	3.78	4.31	16.28	9.31	30.34	11.21	6.17	8.88	27.07	15.93	22.07	30.34	15.43	14.30	8.11	14.76	9.28	10.12	24.00	3.29	13.36	12.54	9.73	17.55	12.86	20.55	16.47	25.85	6.57