Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CTDP1	Gene	0	31.26	59.14	125.00	34.91	57.02	80.60	20.62	16.21	100.56	114.87	106.66	111.54	225.81	92.47	46.22	77.59	52.08	130.19	42.57	21.21	82.57	86.92	108.03	90.10	68.20	115.28	68.16	86.64	57.74
2	397782	Transcript	0	0.00	0.00	0.07	0.00	0.00	0.00	0.00	0.00	0.07	0.00	0.07	0.07	0.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	299543	Transcript	0	22.81	55.62	88.72	34.98	22.12	41.57	9.12	10.97	66.25	84.98	46.95	56.50	171.16	59.48	34.45	59.77	27.25	91.36	33.14	7.80	48.75	43.94	81.37	66.68	42.31	76.27	33.74	58.17	43.85
4	75430	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	0.56	0.00	0.34	4.93	8.99	7.71	2.89	0.00	4.79	3.61	0.72	2.61	7.09	5.17	3.29	13.15	1.63	7.65	3.44	2.81	7.91	10.86	0.83	1.96	0.47	15.48	0.00	9.99	1.20
6	E1_Ab	KnownBoundary	0	2.48	0.00	1.10	21.35	34.48	24.90	2.86	0.00	11.69	7.75	1.61	5.84	15.76	13.67	9.97	43.22	4.55	0.00	0.00	0.00	25.43	30.29	9.85	2.45	1.67	33.77	0.00	27.72	3.10
7	ER1b	ExonRegion	0	8.25	6.24	15.85	7.89	12.93	10.33	2.87	0.94	5.00	13.01	5.16	14.59	21.20	14.93	8.18	15.38	7.87	25.01	6.42	2.80	9.12	14.50	11.88	7.86	3.94	17.25	2.22	13.60	3.14
8	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E1a_E2a	KnownJunction	1	42.71	8.14	48.51	29.77	27.56	16.42	0.00	1.94	18.79	31.68	19.23	77.80	92.06	43.76	23.52	35.19	35.11	60.88	16.18	3.39	6.74	35.78	36.69	13.52	16.06	34.12	0.00	37.25	17.07
10	ER2a	ExonRegion	0	30.03	53.42	85.30	37.00	37.90	48.05	9.38	8.15	32.90	100.27	73.28	126.34	167.87	100.07	31.94	81.01	52.48	147.41	39.76	15.99	37.58	54.25	84.79	41.56	59.96	114.11	14.41	61.15	33.71
11	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.39	1.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E2a_E3a	KnownJunction	1	35.27	104.03	112.47	27.61	45.10	64.42	2.92	11.65	63.40	111.41	84.43	142.65	184.95	154.56	46.24	106.95	64.89	239.01	80.70	13.73	72.20	81.97	118.10	73.03	100.17	166.34	17.89	73.73	44.17
13	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.92	0.00	0.00	0.00	0.00	0.00	8.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER3a	ExonRegion	1	34.59	35.99	105.45	15.25	36.51	43.27	6.03	13.06	37.11	81.80	64.75	111.41	171.35	127.49	20.62	59.42	61.33	135.85	35.29	21.68	42.76	91.40	84.12	49.52	54.86	109.70	43.96	70.94	40.78
15	E3a_E4a	KnownJunction	1	32.03	25.79	106.91	9.71	40.67	39.44	10.70	23.24	38.04	81.09	87.41	138.16	166.93	132.47	17.74	46.74	55.71	134.34	24.28	18.11	42.56	78.37	74.86	48.57	44.59	129.00	46.96	88.43	52.59
16	ER4a	ExonRegion	1	50.68	64.91	151.16	14.34	75.19	76.10	15.94	20.05	58.09	148.47	144.11	199.76	275.01	164.17	39.77	89.12	74.76	192.08	55.96	18.78	75.79	101.22	140.65	82.21	99.32	197.76	61.34	124.86	55.46
17	E4_Da	NovelBoundary	0	0.00	3.68	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.31	0.00	0.00	0.00	0.00	0.00	0.00
18	E4a_E5a	KnownJunction	0	65.24	52.26	202.13	17.90	91.52	108.00	19.85	18.76	53.78	159.58	152.48	137.86	233.26	148.25	46.04	76.96	82.47	168.76	64.74	20.26	110.91	140.21	147.55	95.05	106.95	184.57	76.63	69.64	60.18
19	E4a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	Ix_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.67	2.54	0.00	0.00	0.00	0.00	1.61	0.00	0.78	0.00	0.00	0.00	0.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER5a	ExonRegion	0	44.56	80.47	181.38	45.76	57.90	148.35	23.05	17.01	68.58	220.38	193.47	182.11	273.29	147.95	33.86	106.68	76.92	176.67	67.44	20.07	139.19	109.68	177.27	91.74	96.67	196.93	109.31	131.80	70.82
22	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	1.52	0.00	0.00	1.31	0.91	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E5a_E6a	KnownJunction	1	31.26	139.51	221.24	19.63	99.77	241.37	23.34	13.49	101.35	203.48	223.50	154.76	281.31	166.42	69.56	135.40	56.81	192.39	105.20	23.40	220.93	154.60	174.15	151.69	131.65	197.83	122.16	168.99	68.47
24	Ix	Intron	0	3.32	2.23	1.61	0.99	0.72	2.97	0.77	1.27	3.69	3.44	2.03	1.78	1.52	2.38	1.00	2.51	2.09	2.75	2.57	0.29	2.15	0.32	0.56	1.14	0.80	1.23	0.49	1.54	0.67
25	Ix_SR1	SilentIntronRegion	0	3.34	2.20	1.38	1.09	0.32	2.16	0.42	1.56	1.34	2.17	0.75	1.30	0.93	1.65	0.88	1.63	1.58	2.26	0.84	0.00	1.11	0.23	0.44	0.51	0.47	0.75	0.00	0.54	0.68
26	Ix_AR1	ActiveIntronRegion	0	3.38	5.26	2.03	1.74	0.59	3.82	2.14	1.54	5.35	3.78	6.33	2.96	3.91	3.07	1.79	3.13	1.97	5.65	5.37	0.67	1.69	0.88	0.85	1.07	1.39	2.87	2.65	4.01	1.28
27	Ix_SR2	SilentIntronRegion	0	3.27	1.65	1.80	0.72	1.22	3.74	0.89	0.88	6.08	4.85	2.63	2.08	1.70	3.08	0.99	3.40	2.70	2.72	4.00	0.55	3.44	0.32	0.62	1.88	1.07	1.45	0.60	2.18	0.53
28	E6_Aa	NovelBoundary	0	0.00	0.00	1.54	0.00	0.00	5.37	0.00	0.00	5.85	2.04	0.00	3.31	6.66	2.26	9.97	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	1.98	2.77
29	ER6a	ExonRegion	0	44.16	149.95	199.57	58.10	93.66	267.58	28.57	13.49	117.48	236.70	311.82	155.21	277.00	163.69	43.88	133.18	58.88	180.66	120.56	32.37	230.75	108.88	191.72	170.22	158.33	163.00	179.49	126.50	69.32
30	E6_Da	NovelBoundary	0	2.71	0.00	0.00	0.00	0.00	1.96	0.00	0.00	13.43	5.55	0.00	0.00	6.18	1.33	0.00	0.00	2.25	4.62	0.00	0.00	0.00	0.00	0.00	2.69	0.00	0.00	0.00	0.00	3.10
31	E6a_E7a	KnownJunction	0	51.44	154.54	160.05	42.28	113.92	230.97	35.76	16.32	153.02	186.91	288.51	151.83	250.68	154.61	24.12	159.58	69.33	164.39	113.29	31.01	216.52	102.63	180.20	161.86	152.72	158.40	139.00	109.32	62.16
32	Ix	Intron	0	0.68	0.28	0.90	0.00	0.00	1.44	0.57	0.06	2.70	1.01	0.04	1.15	1.75	0.86	2.45	0.53	0.76	0.79	0.30	0.00	0.68	0.17	0.11	1.23	0.32	1.05	0.12	0.93	0.61
33	Ix_SR1	SilentIntronRegion	0	0.00	1.46	0.00	0.00	0.00	1.73	0.00	0.00	7.07	0.00	0.00	0.00	3.27	0.00	0.00	0.00	0.94	2.43	2.01	0.00	1.80	0.00	0.00	0.00	0.90	0.00	0.00	0.00	0.85
34	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.12	1.81	0.00	5.21	1.81	0.00	2.58	0.53	0.86	1.38	2.77	1.03	0.06	0.00	0.00	0.43	0.00	0.54	4.21	0.43	1.49	0.00	0.84	1.22
35	Ix_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	2.36	0.00	0.00	0.86	4.18	0.00	0.00	3.08	0.20	0.00	0.00	0.78	1.26	0.00	0.00	0.00	0.00	0.00	0.74	0.00	2.13	0.00	0.32	0.46
36	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	2.92	0.00	0.00	6.88	3.75	0.00	0.00	1.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.65	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00
37	ER7a	ExonRegion	0	41.12	142.79	203.01	33.98	86.74	220.94	31.33	18.75	120.96	282.44	249.50	136.86	248.95	168.92	27.06	136.20	73.68	170.73	95.99	36.10	201.68	95.73	172.82	172.12	147.02	151.90	139.34	116.62	79.56
38	E7_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E7a_E8a	KnownJunction	0	57.27	132.53	191.87	47.02	90.78	142.15	25.86	22.79	130.95	212.43	262.76	106.65	229.98	153.04	60.79	112.38	56.90	185.58	48.11	52.76	141.39	130.00	153.66	153.37	168.44	125.31	147.50	93.46	72.20
40	E8_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.91	0.00	0.00	0.00	0.00	2.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER8a	ExonRegion	0	34.51	51.34	133.79	27.64	52.24	56.87	14.49	14.90	87.18	95.76	76.74	114.37	210.60	89.48	35.09	71.44	51.86	131.64	35.15	19.85	66.91	88.28	110.28	79.31	57.81	119.30	47.79	92.66	53.40
42	E8_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.19	0.00	0.00	3.73	0.00	3.72	0.00	0.00	6.12	0.00	0.00	0.00	5.54	0.00	0.00	2.99	0.00	0.00	0.00	0.00	0.00
43	E8a_E9a	KnownJunction	0	18.40	43.53	176.50	52.20	58.95	67.30	21.63	13.74	132.86	124.59	75.45	128.82	246.54	109.92	43.25	70.15	70.81	165.29	32.37	14.39	87.48	77.88	113.96	119.45	76.68	139.26	54.62	101.68	53.68
44	E8a_E10a	NovelJunction	0	0.00	0.00	4.24	0.00	0.00	0.00	0.00	0.00	4.96	2.04	1.52	5.33	1.62	1.11	7.97	0.00	0.00	0.00	0.00	0.00	0.00	1.80	2.51	2.93	0.00	0.00	2.24	11.82	5.48
45	E8a_E12a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	Ix_AR1	ActiveIntronRegion	0	0.55	0.00	1.55	0.83	0.00	1.78	0.27	0.00	4.41	2.14	0.41	2.57	0.75	2.02	1.91	2.17	1.19	1.08	1.48	0.23	1.98	0.00	0.42	2.13	0.53	0.36	0.42	0.57	1.04
47	Ix_AR2	ActiveIntronRegion	0	2.14	0.00	0.00	0.00	0.00	1.37	2.02	0.00	4.49	1.44	0.00	0.00	0.00	2.72	0.00	2.53	1.00	2.73	0.00	0.00	0.00	0.00	0.00	2.15	1.43	0.00	0.00	0.00	1.34
48	Ix_AR3	ActiveIntronRegion	0	3.86	0.00	0.00	0.00	0.00	2.02	2.02	0.00	3.37	0.39	0.00	0.00	0.00	2.00	0.00	2.53	0.20	1.82	0.00	0.00	0.00	0.00	0.00	2.15	1.43	0.00	0.00	3.04	1.52
49	ER9a	ExonRegion	0	26.76	48.00	136.39	24.56	35.96	54.59	14.58	14.91	117.92	101.03	68.36	116.61	258.37	95.62	31.43	83.44	61.44	138.36	32.13	22.70	62.43	91.69	108.97	99.32	65.62	115.29	47.23	102.55	59.77
50	E9a_E10a	KnownJunction	1	28.73	67.77	155.44	18.98	67.79	63.42	16.88	19.61	148.58	189.62	93.42	130.90	273.93	115.50	18.14	117.73	50.56	167.09	24.28	28.20	79.30	94.22	158.78	140.33	79.29	138.87	77.18	124.68	99.80
51	ER10a	ExonRegion	0	38.88	46.21	150.96	23.35	64.57	58.61	16.01	13.81	100.40	121.77	71.27	96.47	246.69	97.17	43.51	89.32	48.24	133.54	43.51	17.43	63.75	98.13	122.11	99.02	62.50	114.30	61.87	86.40	71.13
52	E10a_E11a	KnownJunction	0	35.69	76.49	134.22	68.37	55.56	75.62	14.02	6.32	92.39	173.92	73.20	87.86	246.22	86.06	52.02	93.40	40.18	154.76	56.65	11.50	90.49	54.79	139.82	93.79	62.25	131.53	47.61	102.71	76.72
53	E10a_E12a	KnownJunction	0	18.34	17.06	38.32	21.57	55.12	9.17	0.00	1.84	29.93	46.06	21.32	30.36	64.87	34.05	0.00	24.10	15.46	32.88	8.09	0.00	16.81	44.10	35.36	41.21	24.06	30.73	15.01	19.68	44.57
54	E10a_E14a	NovelJunction	0	3.01	0.00	6.48	0.00	0.00	3.61	0.00	2.34	2.56	7.75	4.30	3.04	5.76	1.88	0.00	3.21	1.40	0.00	0.00	0.00	3.57	0.00	6.65	6.10	1.70	1.63	0.00	0.00	0.00
55	E11_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34	0.00	0.00	1.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.44	9.78	0.00	4.54	0.00
56	ER11a	ExonRegion	0	29.64	51.73	115.30	31.05	20.11	42.29	13.52	19.44	90.31	92.26	67.20	76.23	212.78	76.00	31.58	64.88	34.98	121.77	32.21	11.78	50.02	62.18	94.46	81.16	52.74	81.36	44.07	65.08	47.80
57	E11_Da	NovelBoundary	0	5.60	0.00	0.00	0.00	0.00	3.41	0.00	0.00	1.40	0.00	0.00	1.23	0.00	2.26	0.00	0.00	0.00	4.62	0.00	0.00	7.58	0.00	0.00	3.05	5.23	15.58	0.00	2.07	0.00
58	E11a_E12a	KnownJunction	0	25.89	92.39	105.37	39.47	12.82	47.19	7.50	18.11	81.03	73.74	46.57	60.33	223.42	75.33	54.21	80.78	33.70	86.95	40.46	7.94	54.51	58.78	90.18	89.90	53.04	90.85	43.29	64.88	50.87
59	E11a_E14a	NovelJunction	0	0.00	24.24	5.06	10.57	14.30	4.95	7.32	0.00	9.14	5.39	6.67	4.49	13.66	15.16	8.37	3.37	6.35	4.62	0.00	4.13	5.46	4.86	6.99	0.00	9.43	1.67	11.28	8.18	1.22
60	Ix	Intron	0	2.93	2.29	2.00	0.61	1.39	3.47	0.48	0.72	2.95	3.25	1.67	3.71	1.16	3.22	3.31	3.99	3.14	5.73	2.33	0.70	3.04	0.50	0.77	2.65	1.60	2.19	0.68	2.16	0.48
61	Ix_SR1	SilentIntronRegion	0	2.73	2.48	2.02	0.64	1.57	3.39	0.43	0.68	2.30	3.40	1.58	3.49	1.11	3.14	2.96	3.88	2.92	5.91	2.42	0.71	2.73	0.42	0.76	2.18	1.48	2.07	0.69	2.16	0.46
62	Ix_AR1	ActiveIntronRegion	0	4.06	1.21	1.87	0.46	0.34	3.92	0.77	0.90	6.69	2.38	2.19	4.98	1.40	3.71	5.34	4.64	4.45	4.73	1.84	0.66	4.84	0.92	0.82	5.38	2.28	2.91	0.59	2.20	0.56
63	E12_Aa	NovelBoundary	0	8.73	4.85	2.44	0.00	0.00	1.84	0.00	0.00	10.26	0.00	1.61	2.98	1.91	3.37	9.97	3.82	2.75	0.00	0.00	0.00	5.17	0.00	0.00	3.05	0.00	0.00	2.14	0.00	1.82
64	ER12a	ExonRegion	0	33.74	57.36	126.49	36.34	44.95	44.28	13.41	18.25	92.05	79.08	57.05	92.92	262.49	76.40	43.23	82.88	42.38	135.31	32.25	15.55	44.28	94.52	99.47	92.81	61.14	97.87	34.46	79.79	66.83
65	E12a_E14a	KnownJunction	0	47.37	48.67	111.52	30.41	54.67	56.36	21.00	15.48	105.91	82.29	61.81	88.64	228.58	74.65	56.81	71.91	46.62	151.03	24.28	17.95	41.88	116.00	116.43	89.54	45.58	102.14	49.30	89.64	70.85
66	ER13a	ExonRegion	0	0.00	0.00	0.07	0.00	0.00	0.00	0.00	0.00	0.07	0.00	0.07	0.07	0.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	Ix_AR2	ActiveIntronRegion	0	0.00	3.28	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	E14_Aa	NovelBoundary	0	4.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.46	0.00	0.00	1.87	1.97	0.91	8.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.40	0.00
69	ER14a	ExonRegion	0	30.90	78.39	139.94	65.38	91.13	122.58	43.18	26.59	192.12	144.42	170.46	140.63	332.82	97.92	99.83	95.96	68.76	155.08	53.86	33.92	126.09	119.26	127.71	133.58	91.33	138.39	122.80	104.66	87.59
70	ER14b	ExonRegion	0	0.00	1.88	0.00	1.04	0.00	1.18	1.44	0.00	1.28	0.00	0.85	1.59	2.23	0.52	0.00	0.00	0.14	1.95	3.23	0.00	0.00	0.00	1.03	1.84	1.23	1.35	0.00	0.00	0.00