Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RAB12	Gene	0	43.82	351.09	64.90	76.62	126.99	171.63	115.31	49.58	321.42	129.50	101.55	109.43	137.19	81.90	190.24	51.88	111.67	112.78	160.03	109.84	112.49	76.41	47.19	211.72	91.92	82.14	83.19	91.65	95.76
2	329286	Transcript	0	78.23	312.22	118.20	93.80	147.09	215.30	127.55	88.78	210.56	180.66	166.48	159.67	171.37	142.19	151.42	80.20	152.85	160.34	167.00	137.52	126.61	126.23	83.22	247.08	153.88	150.32	122.17	158.12	129.23
3	ER1a	ExonRegion	0	11.29	26.99	20.25	20.29	18.65	19.36	12.32	10.72	11.84	17.57	9.28	16.46	15.66	12.17	13.28	11.51	15.94	21.16	15.90	14.58	10.52	21.23	8.96	20.83	13.02	20.13	10.64	15.39	9.18
4	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.40	0.00	2.62	0.00	1.61	0.00	1.31	2.02	0.00	3.67	1.17	0.00	0.00	3.06	1.72	0.00	0.00	0.00	0.00	0.00	0.00	4.31	0.00
5	E1a_E2a	KnownJunction	0	66.89	117.99	87.92	68.37	68.38	82.84	56.18	35.48	69.98	73.22	79.50	109.85	75.44	80.69	77.93	42.30	99.85	98.63	72.83	66.74	47.33	61.06	33.88	104.20	69.82	60.38	99.25	65.69	57.48
6	I1	Intron	0	4.50	5.50	2.98	1.83	1.77	5.85	1.93	1.47	11.67	5.91	5.60	6.54	4.79	5.62	10.56	5.42	9.65	6.87	5.13	3.11	5.36	1.54	1.54	4.58	2.55	4.36	1.90	9.18	1.96
7	I1_AR1	ActiveIntronRegion	0	3.82	0.00	0.46	0.00	0.00	1.05	0.00	0.00	0.00	0.00	0.00	2.88	0.02	1.45	2.22	2.84	2.09	6.49	3.07	3.61	2.21	0.00	0.48	0.00	0.69	1.51	0.14	1.25	0.00
8	I1_AR2	ActiveIntronRegion	0	8.57	0.00	1.12	0.00	0.00	6.87	0.00	0.00	0.00	0.00	0.00	0.62	1.30	0.91	0.00	5.27	5.18	8.19	0.00	2.81	1.43	0.00	1.81	0.00	0.00	0.00	1.83	4.08	0.00
9	I1_AR3	ActiveIntronRegion	0	8.57	0.00	1.12	0.00	0.00	7.10	0.00	0.00	0.00	0.00	0.00	1.24	1.30	0.91	0.00	5.06	5.01	6.37	0.00	2.81	1.43	0.00	1.81	0.00	0.00	0.00	1.83	3.26	1.12
10	I1_AR4	ActiveIntronRegion	0	5.05	0.00	0.96	0.00	0.00	5.60	0.00	0.00	0.00	0.72	0.00	1.24	1.30	1.43	0.00	5.06	4.87	2.73	0.00	2.81	2.85	1.67	0.77	1.23	0.00	0.00	1.83	4.19	1.34
11	I1_SR1	SilentIntronRegion	0	3.80	1.78	2.34	0.00	0.00	3.93	0.60	0.55	0.68	2.87	2.20	3.67	0.15	4.02	3.42	1.17	2.74	6.27	2.37	3.15	3.52	1.12	1.76	1.54	0.77	0.47	0.31	6.72	0.42
12	I1_AR5	ActiveIntronRegion	0	3.09	3.14	3.32	2.22	0.84	5.40	1.04	1.33	8.31	6.34	3.68	3.57	2.75	6.54	4.69	5.39	6.97	8.77	3.93	1.81	4.58	0.48	1.95	1.66	3.60	2.28	0.00	5.42	1.38
13	I1_SR2	SilentIntronRegion	0	3.49	3.77	1.73	3.39	1.43	6.13	3.00	1.24	5.65	2.93	3.91	4.87	1.62	4.39	4.58	4.86	7.69	6.24	3.05	3.18	3.00	1.22	1.58	1.39	1.74	1.91	1.11	3.83	1.76
14	I1_AR6	ActiveIntronRegion	0	5.35	1.82	3.14	0.71	0.96	3.99	0.40	2.18	7.29	5.12	4.28	4.56	4.54	4.94	4.44	3.18	6.24	5.16	1.85	2.82	4.17	0.53	1.61	1.06	1.93	3.46	2.35	8.69	1.81
15	I1_SR3	SilentIntronRegion	0	2.81	1.20	4.41	0.00	0.67	6.16	0.55	0.25	9.87	4.32	5.17	3.02	3.57	5.78	1.90	4.45	4.15	5.96	1.95	1.11	4.31	0.49	1.97	1.47	1.69	4.51	2.32	7.42	0.32
16	I1_AR7	ActiveIntronRegion	0	2.58	7.28	1.16	0.00	0.39	5.99	2.40	1.32	18.50	9.08	6.51	7.71	7.70	5.85	10.73	9.74	9.53	5.30	6.01	2.47	10.12	0.29	1.72	5.13	3.60	1.22	1.57	8.26	3.55
17	I1_SR5	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.03	0.00	0.00	2.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	I1_AR8	ActiveIntronRegion	0	2.73	8.26	1.89	0.00	1.38	9.90	2.28	1.30	15.15	10.21	6.73	4.54	2.66	7.02	15.70	2.36	15.19	6.80	9.03	6.12	9.27	0.76	2.55	6.69	3.84	1.55	7.50	6.68	2.27
19	I1_AR9	ActiveIntronRegion	0	9.90	10.63	7.26	5.44	4.54	10.14	4.17	4.19	30.15	11.89	11.81	13.55	13.74	9.52	30.95	6.76	19.19	9.67	5.28	3.80	7.62	4.53	3.36	13.12	5.47	10.24	3.79	19.66	4.67
20	I1_SR7	SilentIntronRegion	0	0.00	0.00	2.24	0.00	0.00	0.00	0.00	0.00	5.62	0.00	0.00	3.71	5.20	5.44	0.00	0.00	0.00	0.00	0.00	0.00	5.71	0.00	0.00	2.15	0.00	0.00	0.00	6.52	0.00
21	I1_AR10	ActiveIntronRegion	1	12.72	10.04	6.43	5.75	8.62	7.05	5.50	2.07	25.95	8.10	10.88	12.65	15.86	9.93	33.60	8.93	33.28	9.73	3.59	4.05	8.90	9.54	4.06	23.45	7.34	22.68	6.17	32.13	5.79
22	I1_SR8	SilentIntronRegion	0	2.93	4.97	1.97	1.61	1.17	4.67	1.06	1.19	7.97	4.18	4.28	4.81	3.75	4.31	6.83	4.23	7.01	5.08	4.95	2.45	4.10	1.02	0.81	2.61	1.54	3.28	1.55	6.95	1.46
23	I1_AR11	ActiveIntronRegion	0	5.00	2.19	1.12	0.00	0.00	6.87	1.01	0.00	9.55	0.00	0.00	2.68	0.00	6.50	5.60	3.37	6.01	10.01	6.03	5.62	5.94	1.80	0.00	2.15	2.86	0.00	9.16	8.15	1.34
24	I1_AR12	ActiveIntronRegion	0	2.06	1.93	1.54	1.25	0.00	5.38	1.22	0.48	4.72	6.20	3.75	6.28	0.70	5.38	3.54	5.12	6.08	7.69	3.61	3.93	6.28	0.73	0.00	2.25	1.17	1.31	3.83	6.23	0.05
25	I1_SR9	SilentIntronRegion	0	4.15	5.53	2.35	0.20	1.65	4.79	1.96	0.44	7.39	4.76	4.75	6.84	1.09	5.00	6.75	7.28	7.92	8.60	8.44	3.94	5.12	0.56	0.81	2.60	1.81	3.50	0.05	7.11	0.83
26	E2_Aa	NovelBoundary	0	0.00	11.83	1.00	0.00	7.37	1.76	2.92	0.00	8.19	3.64	10.69	0.00	0.00	3.48	18.74	6.96	9.18	4.62	24.28	7.28	7.38	0.00	0.00	3.05	1.59	4.38	6.86	10.51	0.00
27	ER2a	ExonRegion	0	63.64	195.10	72.64	108.49	141.69	130.17	81.69	55.20	97.01	134.01	146.17	120.46	114.12	110.90	98.61	63.81	102.57	96.24	108.55	117.82	72.93	80.12	58.28	173.47	103.43	81.65	96.44	110.79	90.39
28	E2_Da	NovelBoundary	1	0.00	0.00	0.00	0.00	0.00	7.67	0.00	2.54	1.67	1.60	6.77	2.65	1.46	8.40	0.00	10.02	3.13	19.01	24.28	0.00	7.34	0.00	0.00	0.00	0.00	0.00	0.00	13.08	0.00
29	E2a_E3a	KnownJunction	0	62.29	275.44	60.74	67.51	227.84	175.19	131.77	40.91	169.86	229.37	203.13	137.32	141.17	127.71	181.78	135.63	125.38	116.36	169.94	137.94	97.27	102.58	80.97	233.16	127.48	137.97	96.36	131.33	127.56
30	I2	Intron	0	3.68	5.57	1.89	2.93	2.29	5.92	1.74	1.04	5.43	5.16	3.88	4.77	1.53	7.31	6.15	6.31	7.99	6.19	7.90	3.70	5.95	0.48	1.14	2.23	2.86	2.76	0.89	10.00	1.01
31	I2_SR1	SilentIntronRegion	0	2.76	1.89	1.72	3.31	0.68	6.37	0.56	0.09	3.08	6.64	3.93	4.02	1.09	6.48	1.72	6.75	6.92	4.09	6.89	1.28	5.89	0.34	0.84	0.33	1.62	1.61	0.51	8.53	0.87
32	I2_AR1	ActiveIntronRegion	0	5.03	4.93	2.15	2.17	2.19	1.84	0.83	1.37	1.17	3.85	1.62	4.02	0.84	6.61	3.39	2.74	6.16	6.50	7.27	7.35	2.52	0.54	1.85	0.94	1.19	2.04	0.00	10.08	0.40
33	I2_SR2	SilentIntronRegion	0	3.10	5.09	1.72	0.82	0.56	4.65	2.09	1.27	1.89	5.75	2.57	3.42	1.72	6.68	2.85	3.25	4.31	4.68	4.40	1.77	5.59	0.40	1.00	0.99	1.22	1.49	0.00	9.44	0.38
34	I2_AR2	ActiveIntronRegion	0	3.75	4.09	1.61	1.81	0.99	5.59	1.88	0.46	2.51	6.25	2.51	4.72	1.20	8.91	2.42	7.59	7.64	5.09	7.38	3.55	6.15	0.64	0.87	0.76	2.50	1.65	0.74	6.66	0.61
35	I2_SR3	SilentIntronRegion	0	3.07	4.84	0.00	1.78	0.00	4.09	3.00	0.22	2.70	5.35	5.24	3.11	0.00	8.48	0.00	6.60	8.92	7.97	9.42	1.75	4.57	1.24	1.66	0.00	4.94	0.30	0.00	8.83	0.00
36	I2_AR3	ActiveIntronRegion	0	2.64	5.93	0.81	1.32	2.39	6.75	1.15	1.39	4.15	5.54	5.47	2.09	0.90	5.58	3.13	4.13	6.90	6.09	7.93	3.36	7.00	0.21	1.08	0.69	3.36	1.35	1.92	8.23	0.39
37	I2_AR4	ActiveIntronRegion	0	3.76	5.05	1.50	3.22	2.74	6.83	1.98	0.93	6.18	4.12	3.20	5.21	1.23	7.45	4.63	8.08	7.33	6.88	8.98	3.45	6.65	0.27	1.24	2.08	3.07	2.35	1.29	11.02	0.72
38	I2_SR4	SilentIntronRegion	0	1.31	4.74	2.77	0.41	0.00	6.72	0.00	1.84	3.03	1.80	6.51	7.35	5.23	3.17	10.42	4.78	5.93	7.51	7.79	3.20	5.59	0.00	0.00	2.33	4.92	0.04	0.00	11.18	1.64
39	I2_AR5	ActiveIntronRegion	1	2.76	16.42	3.37	7.31	0.00	11.19	0.00	5.26	7.54	4.33	13.43	9.90	5.20	5.44	28.00	5.42	7.01	24.17	12.93	5.62	8.56	0.00	0.00	3.99	7.15	2.92	0.00	24.45	2.68
40	I2_AR6	ActiveIntronRegion	1	4.29	17.52	3.37	7.31	0.83	11.91	2.02	5.52	9.74	6.50	14.88	11.75	5.20	5.59	25.20	7.59	7.51	28.66	10.56	5.62	7.85	0.00	1.21	3.59	7.38	3.14	0.00	27.44	2.68
41	I2_AR7	ActiveIntronRegion	1	6.43	19.71	3.37	7.31	4.98	7.33	2.02	5.52	10.11	10.11	14.28	11.75	2.60	6.50	28.00	5.06	10.02	24.11	16.59	7.96	6.18	0.00	1.81	2.15	5.72	3.93	0.00	32.87	2.68
42	I2_AR8	ActiveIntronRegion	1	6.67	18.98	3.37	7.31	4.98	5.50	2.02	5.52	10.49	12.83	9.92	9.90	2.60	8.37	24.27	7.59	12.13	23.35	18.10	8.43	5.07	0.00	1.81	2.15	9.05	4.71	0.00	34.23	2.39
43	I2_AR9	ActiveIntronRegion	0	2.39	9.11	2.41	2.87	4.35	6.06	1.96	2.12	6.83	4.71	5.43	7.30	2.25	8.49	16.73	6.13	8.88	7.31	8.98	3.25	5.85	0.83	1.77	3.86	3.08	8.80	2.03	12.01	1.98
44	I2_SR5	SilentIntronRegion	0	1.16	0.00	1.81	3.89	0.00	5.91	1.09	0.00	5.47	3.13	3.23	6.99	1.76	2.70	5.48	4.04	3.24	4.18	1.73	5.56	6.18	0.00	1.96	2.33	1.55	4.26	0.00	7.96	0.00
45	I2_SR6	SilentIntronRegion	0	5.55	8.93	3.66	6.19	3.94	6.41	2.55	1.27	13.32	5.73	6.03	5.75	3.02	7.74	15.11	6.74	14.09	6.69	8.64	5.17	5.75	0.83	0.62	7.18	4.52	4.16	0.11	12.66	2.84
46	E3_Aa	NovelBoundary	1	5.01	8.82	7.23	35.37	0.00	5.10	0.00	2.09	12.58	9.35	8.00	3.07	0.00	13.49	26.51	17.44	16.25	4.62	8.09	3.06	3.81	0.00	0.00	13.22	10.95	0.00	0.00	30.96	1.42
47	ER3a	ExonRegion	0	94.58	357.80	138.99	86.28	180.77	222.88	130.70	101.15	187.72	201.96	180.32	186.62	186.04	166.73	135.46	111.06	164.53	167.99	182.21	167.37	127.63	136.02	92.42	288.11	176.00	171.96	97.44	160.75	116.87
48	E3_Da	NovelBoundary	0	0.00	0.00	0.92	0.00	0.00	3.15	0.00	0.00	1.40	0.00	0.00	4.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	3.95	0.00
49	E3a_E4a	KnownJunction	0	87.00	329.92	189.83	82.83	96.68	204.31	137.20	81.07	176.96	159.86	179.08	204.15	161.58	172.93	136.14	74.89	218.72	183.91	218.27	178.63	101.08	116.58	109.93	300.81	156.69	152.73	254.90	191.45	128.32
50	I3	Intron	0	2.38	4.45	1.55	1.29	0.88	1.67	0.94	0.66	2.63	2.91	1.54	1.38	0.60	3.08	2.11	2.39	2.50	1.59	4.04	2.02	2.06	0.37	0.37	0.67	0.96	0.97	0.09	3.83	0.78
51	I3_SR1	SilentIntronRegion	0	2.38	4.46	1.55	1.30	0.88	1.67	0.94	0.67	2.63	2.91	1.54	1.39	0.60	3.08	2.11	2.39	2.51	1.59	4.04	2.02	2.06	0.37	0.37	0.67	0.96	0.97	0.09	3.83	0.78
52	E4_Aa	NovelBoundary	0	3.01	13.48	1.17	0.00	0.00	0.00	2.92	2.49	7.58	3.75	0.00	0.00	0.00	0.00	9.17	3.06	3.35	4.62	0.00	0.00	2.05	0.00	2.27	0.00	0.00	1.63	0.00	1.75	0.00
53	ER4a	ExonRegion	1	105.53	396.89	235.97	123.58	177.95	325.57	185.52	126.73	227.15	313.59	281.84	228.56	264.94	209.15	160.55	123.53	240.25	224.91	218.50	183.32	194.57	155.52	150.93	333.48	220.90	235.90	224.65	287.36	196.20
54	E4_Da	NovelBoundary	0	0.00	8.34	3.66	0.00	0.00	0.00	2.23	0.00	3.93	3.44	0.00	4.61	0.00	5.83	9.97	3.21	5.92	4.62	8.09	0.00	7.58	2.29	0.00	0.00	0.00	0.00	2.53	6.02	0.00
55	E4a_E5a	KnownJunction	1	111.84	346.60	191.72	125.75	212.07	452.12	187.89	185.18	339.76	274.87	217.80	231.05	272.87	231.60	171.22	88.36	209.09	276.12	202.31	188.39	256.87	209.98	114.90	341.13	238.07	305.89	151.68	286.48	230.47
56	I4	Intron	0	1.09	3.56	2.27	1.83	3.73	2.92	1.37	0.78	8.08	2.21	0.81	4.92	1.97	4.57	5.95	5.12	5.70	2.78	4.34	4.01	5.81	0.31	0.00	1.28	2.30	2.00	2.02	3.87	1.02
57	I4_SR1	SilentIntronRegion	0	1.09	3.57	2.28	1.83	3.74	2.93	1.37	0.78	8.11	2.22	0.81	4.94	1.98	4.58	5.97	5.14	5.72	2.79	4.35	4.03	5.83	0.31	0.00	1.28	2.31	2.01	2.03	3.89	1.02
58	E5_Aa	NovelBoundary	0	8.38	11.54	6.28	0.00	20.48	7.48	5.38	3.78	9.87	3.36	4.71	7.77	2.48	11.79	17.14	0.00	4.75	0.00	0.00	4.05	0.00	2.29	0.00	5.26	3.75	3.86	10.68	0.00	0.00
59	ER5a	ExonRegion	0	119.73	445.87	144.93	112.20	200.97	282.32	172.89	177.85	262.82	228.09	221.64	207.55	258.16	206.41	179.06	93.03	198.58	200.74	228.71	169.36	159.90	232.33	103.67	351.31	249.75	231.69	124.06	208.72	181.76
60	E5_Da	NovelBoundary	0	2.95	9.21	3.96	0.00	0.00	0.00	0.00	0.00	3.01	7.75	1.55	4.67	0.00	11.21	0.00	2.83	6.37	4.62	8.09	0.00	5.90	0.00	5.02	0.00	0.00	0.00	0.00	0.00	0.00
61	E5a_E6a	KnownJunction	0	98.21	461.48	101.88	145.81	138.09	263.55	159.23	119.29	285.98	209.27	207.40	192.80	231.76	166.00	234.60	85.53	177.53	248.13	210.40	156.71	179.81	199.82	116.52	308.41	245.87	181.57	91.39	191.18	168.57
62	I5	Intron	0	3.61	5.76	2.81	2.01	1.92	2.70	3.28	1.45	5.94	5.67	0.73	3.04	1.92	4.13	10.27	3.08	4.86	3.46	1.97	4.59	2.88	0.20	0.81	3.01	1.20	3.53	0.00	3.29	1.61
63	I5_SR1	SilentIntronRegion	0	3.61	5.77	2.82	2.01	1.92	2.70	3.28	1.45	5.95	5.68	0.74	3.05	1.93	4.14	10.28	3.09	4.86	3.46	1.97	4.60	2.88	0.20	0.81	3.02	1.20	3.53	0.00	3.30	1.62
64	E6_Aa	NovelBoundary	0	5.66	4.46	0.00	0.00	14.15	6.83	0.00	2.44	12.49	3.95	0.00	1.27	1.62	8.35	23.52	0.00	9.81	0.00	16.18	0.00	9.11	2.48	4.43	5.86	3.67	3.86	0.00	1.71	1.58
65	ER6a	ExonRegion	0	39.58	480.33	55.30	90.73	154.87	210.07	147.69	42.98	487.13	145.47	105.16	121.51	163.35	79.80	277.05	52.54	128.87	129.51	209.43	131.84	144.77	73.25	44.95	262.99	91.58	73.69	97.05	90.14	114.71
66	IG49_AR1	ActiveIntergenicRegion	0	0.00	1.26	0.00	0.00	4.45	0.31	0.00	0.00	0.00	0.00	4.88	0.64	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00