Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	COX11	Gene	0	117.46	111.48	54.76	300.90	204.90	148.37	314.02	142.89	129.14	106.14	148.34	190.81	131.08	71.33	243.99	106.18	81.42	77.97	370.95	146.49	178.01	70.89	121.47	88.21	63.02	55.86	161.56	95.42	82.56
2	299335	Transcript	0	183.85	108.73	136.12	470.29	279.33	151.76	367.83	246.59	122.84	139.43	197.15	256.40	170.95	98.32	262.87	117.90	112.54	96.78	372.24	194.85	190.31	107.83	179.04	106.18	103.03	69.45	173.04	130.28	105.47
3	ER1a	ExonRegion	0	199.82	49.38	156.66	499.24	258.21	129.18	613.93	289.74	104.17	145.66	81.05	253.84	188.28	84.07	225.52	161.91	122.70	111.22	204.65	141.45	159.79	152.94	274.09	51.28	68.95	218.38	73.52	294.33	148.61
4	E1a_E2a	KnownJunction	0	208.57	85.03	523.91	945.59	535.84	100.18	291.51	225.29	93.52	94.43	84.02	251.86	183.30	96.56	172.01	107.63	124.36	108.27	323.70	175.07	140.63	90.67	193.01	87.63	51.30	40.73	62.72	121.14	146.15
5	I1_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	4.03	0.00	0.00	5.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.46	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER2a	ExonRegion	0	333.68	146.52	263.40	1252.01	624.51	201.50	471.94	523.30	148.30	203.14	291.50	379.42	270.72	175.57	352.44	153.37	157.55	167.62	500.31	312.20	252.48	197.13	296.75	169.94	178.31	95.56	254.28	202.08	160.97
8	E2a_E3a	KnownJunction	0	343.41	186.82	122.61	572.23	359.88	208.53	517.34	486.41	217.43	235.36	343.58	421.20	293.35	185.01	433.32	195.76	210.82	152.06	581.76	343.86	333.04	203.61	282.74	217.97	197.80	119.34	259.67	169.71	158.79
9	I2_AR1	ActiveIntronRegion	0	0.00	2.82	0.00	0.00	1.81	2.04	1.31	0.15	1.15	1.21	1.24	0.23	0.36	0.48	0.00	0.69	2.28	0.89	2.08	1.20	1.99	0.50	0.34	1.40	0.13	0.00	0.00	0.15	1.24
10	E3_Aa	NovelBoundary	0	0.00	4.85	0.00	0.00	7.37	3.38	2.92	0.00	3.20	0.00	0.00	0.00	0.00	1.33	0.00	0.00	2.70	4.62	8.09	3.64	0.00	2.48	6.45	3.05	0.00	0.00	2.34	0.00	3.47
11	ER3a	ExonRegion	0	276.32	204.94	79.82	416.24	278.18	262.18	570.41	370.92	199.93	242.27	413.40	422.73	285.80	157.59	389.91	192.40	171.56	143.87	666.84	333.82	348.51	154.86	286.57	168.76	170.58	81.23	381.57	187.82	153.12
12	E3_Da	NovelBoundary	0	23.83	44.69	3.09	65.57	20.93	63.31	47.09	6.67	25.21	22.41	13.51	34.31	15.32	20.85	97.27	39.47	26.79	28.51	137.57	53.18	59.56	14.24	24.23	16.45	5.00	5.36	16.75	8.94	17.70
13	E3a_E4a	KnownJunction	0	200.90	173.54	53.14	309.95	278.38	287.30	563.79	230.17	180.37	236.40	402.30	407.07	184.92	88.07	442.29	130.20	137.82	113.28	606.71	243.96	286.35	100.25	193.80	121.43	191.32	41.71	346.24	130.39	105.64
14	E3a_E5a	NovelJunction	0	2.83	0.00	0.00	0.00	0.00	0.00	2.46	0.00	0.00	1.76	0.00	0.00	1.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	0.00	2.39	0.00	0.00	0.00	0.00	0.00
15	I3	Intron	1	17.38	34.25	4.59	39.39	10.86	38.66	39.80	3.37	14.21	9.07	14.31	14.03	10.32	10.57	57.64	19.30	24.79	24.73	147.05	38.69	44.39	5.42	9.22	12.66	3.36	4.52	12.93	4.26	13.88
16	I3_AR1	ActiveIntronRegion	1	17.47	34.42	4.62	39.60	10.91	38.85	40.00	3.39	14.29	9.12	14.39	14.10	10.37	10.62	57.94	19.40	24.92	24.86	147.79	38.89	44.62	5.45	9.25	12.72	3.38	4.54	13.00	4.29	13.95
17	E4_Aa	NovelBoundary	0	15.81	41.59	0.00	0.00	0.00	15.35	26.60	2.34	6.52	5.43	10.82	1.54	6.02	10.55	0.00	14.08	27.96	9.25	89.02	10.59	36.50	4.96	0.00	5.20	0.00	0.00	14.56	2.11	6.87
18	ER4a	ExonRegion	0	81.22	128.56	17.13	196.44	174.13	156.14	248.06	75.51	141.59	90.69	149.28	165.22	108.88	59.66	250.70	93.28	66.84	65.90	416.01	133.82	183.28	41.73	72.76	91.44	50.65	19.30	176.61	43.76	64.42
19	E4_Da	NovelBoundary	0	8.14	4.85	4.43	30.63	0.00	15.08	10.64	4.73	4.45	11.06	9.30	11.60	0.00	14.67	8.97	11.25	35.70	4.62	16.18	11.25	15.08	0.00	2.12	11.78	0.00	4.98	2.53	17.57	1.78
20	E4a_E5a	KnownJunction	0	2.65	0.00	2.74	15.96	0.00	10.86	20.25	8.66	6.88	1.52	3.95	2.41	12.99	22.29	47.64	7.57	7.83	0.00	16.18	41.76	0.00	15.17	4.43	23.87	12.16	5.15	0.00	12.90	5.28
21	Ix	Intron	0	8.24	12.04	1.91	6.70	7.61	18.99	10.26	3.63	6.47	8.10	6.55	8.58	1.81	13.01	28.06	14.66	39.23	15.94	44.80	6.75	20.89	0.37	2.07	6.26	3.56	1.47	5.14	6.10	4.92
22	Ix_AR1	ActiveIntronRegion	0	11.86	7.09	1.80	6.60	7.49	15.42	7.16	2.95	7.08	9.45	4.33	7.96	1.79	13.34	13.54	15.43	34.54	15.65	46.71	6.18	19.01	0.00	1.56	9.02	3.68	2.83	5.87	7.64	3.92
23	Ix_SR1	SilentIntronRegion	0	6.44	14.64	1.98	6.79	7.72	20.92	11.90	4.01	6.20	7.46	7.72	8.93	1.83	12.92	35.63	14.36	41.86	16.19	44.08	7.08	21.97	0.57	2.34	4.89	3.52	0.79	4.79	5.35	5.46
24	Ix	Intron	0	15.16	11.31	7.31	19.97	8.03	17.52	11.82	11.31	10.72	13.41	9.23	11.76	5.61	20.93	36.18	25.19	46.36	17.35	33.68	12.10	15.67	3.57	4.56	17.44	9.79	6.94	9.47	19.09	11.13
25	Ix_SR6	SilentIntronRegion	0	7.25	11.91	2.46	6.32	1.44	11.11	8.00	2.16	2.64	9.34	5.25	2.80	1.04	8.84	14.46	10.06	14.69	10.81	29.58	3.82	12.79	1.32	2.13	4.11	3.99	2.54	0.27	11.74	3.83
26	Ix_AR5	ActiveIntronRegion	0	5.79	8.40	0.00	4.84	8.25	16.25	5.45	3.73	4.17	7.80	6.43	2.71	1.53	10.55	12.39	12.94	9.58	13.23	23.74	8.26	16.38	1.22	3.66	13.80	4.83	4.78	18.56	6.06	0.91
27	Ix_AR3	ActiveIntronRegion	0	19.33	24.05	10.54	33.76	13.25	36.98	17.37	8.96	27.15	25.81	21.57	25.68	17.20	33.14	55.57	38.13	66.12	25.73	68.33	15.76	40.30	9.35	14.43	28.33	18.36	11.41	26.47	33.83	23.90
28	Ix_AR2	ActiveIntronRegion	0	16.02	8.80	7.31	17.50	7.70	11.67	11.79	15.35	6.70	11.97	6.41	9.85	5.33	21.29	32.89	25.58	56.17	17.83	30.38	10.87	9.65	4.04	3.22	13.45	10.25	7.75	2.98	20.06	9.22
29	Ix_AR1	ActiveIntronRegion	0	17.67	9.03	8.47	22.47	8.18	15.52	11.86	14.31	9.34	10.72	6.90	11.08	2.64	22.59	36.81	26.81	45.18	16.47	27.02	15.89	9.73	2.01	2.33	20.69	8.84	6.34	9.28	16.79	10.60
30	Ix_SR1	SilentIntronRegion	0	8.21	3.31	5.38	13.18	5.24	12.21	8.03	5.92	7.64	10.40	7.84	6.70	1.49	7.90	40.13	14.83	32.91	11.65	9.79	5.67	10.49	0.00	0.55	12.52	3.72	3.61	2.53	9.74	6.56
31	E5_Aa	NovelBoundary	0	5.72	8.53	1.54	0.00	0.00	9.02	7.61	0.00	24.61	7.19	7.21	2.50	1.82	13.45	17.54	30.22	24.99	0.00	16.18	19.43	10.83	2.04	0.00	17.29	5.00	0.00	0.00	6.56	3.24
32	ER5a	ExonRegion	0	8.07	3.75	5.64	24.98	4.81	9.95	13.26	9.29	13.36	5.43	5.24	3.81	10.29	16.10	52.00	18.94	13.36	8.82	34.04	27.66	8.70	14.09	7.24	23.30	6.20	3.67	2.71	10.43	6.22