Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	SOX9	Gene	0	0.78	0.63	0.22	0.56	0.00	0.55	1.54	0.07	0.40	0.23	0.34	0.22	0.05	265.87	67.10	65.31	20.16	2.57	9.25	7.53	3.80	0.02	19.34	2.91	38.86	5.45	6.99	104.52	11.52
2	455872	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	20.12	14.55	20.20	5.11	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	1.63	0.00	23.90	0.00
3	245479	Transcript	0	0.92	0.37	0.08	0.36	0.00	0.54	1.25	0.02	0.32	0.30	0.16	0.41	0.05	217.71	70.04	58.16	19.53	2.37	8.50	6.76	3.24	0.02	16.93	2.22	36.19	4.80	6.04	94.27	11.45
4	ER1a	ExonRegion	0	0.68	0.61	0.32	0.00	0.00	0.00	0.26	0.00	0.00	0.00	0.23	0.00	0.00	232.85	23.62	62.76	14.45	1.52	3.86	3.99	1.63	0.00	19.67	1.16	18.12	5.72	1.48	92.93	4.78
5	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	429.26	24.12	52.86	31.04	0.00	0.00	7.28	0.00	0.00	43.34	3.05	35.65	5.41	4.62	313.08	11.32
6	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	11.03	7.77	9.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.80	0.00
7	ER2a	ExonRegion	0	1.28	1.94	0.67	0.00	0.00	0.55	0.81	0.00	1.03	0.81	1.19	0.25	0.00	412.77	38.59	68.14	33.72	2.41	5.11	5.77	2.50	0.00	28.57	1.51	37.94	9.83	1.78	206.19	6.86
8	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.17	1.68	0.00	0.00	0.00	605.03	70.96	181.30	48.15	4.62	0.00	11.74	7.66	0.00	55.41	0.00	51.30	24.76	11.78	464.37	10.89
9	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	15.18	38.27	11.17	0.00	0.00	0.00	4.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00
10	ER3a	ExonRegion	0	0.64	0.00	0.24	0.00	0.00	0.60	0.29	0.00	0.07	0.04	0.52	0.53	0.00	192.37	27.48	41.59	16.75	3.77	1.86	5.57	1.91	0.00	13.49	0.00	15.13	5.08	2.19	113.59	4.74
11	E3_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	58.43	17.74	56.46	6.53	4.62	0.00	0.00	0.00	0.00	6.80	0.00	5.61	1.63	0.00	80.88	1.39
12	E3a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	20.12	14.55	20.20	5.11	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	1.63	0.00	23.90	0.00
13	ER3b	ExonRegion	0	0.98	0.00	0.00	0.00	0.00	0.36	0.00	0.00	0.00	0.34	0.00	0.65	0.00	162.90	42.54	45.49	18.98	1.85	2.63	3.98	0.94	0.00	14.32	0.00	18.83	4.45	1.00	100.98	6.54
14	E3_Ab	KnownBoundary	0	2.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	282.14	40.46	88.28	36.17	0.00	16.18	11.41	2.05	0.00	14.63	0.00	35.99	8.20	1.99	137.04	6.40
15	ER3c	ExonRegion	0	0.07	0.00	0.00	2.45	0.00	0.94	1.62	0.63	0.00	0.27	0.11	0.54	0.00	338.00	64.68	73.11	29.33	2.46	5.59	9.49	2.92	0.00	19.35	3.68	36.78	4.15	8.10	155.57	12.07
16	E3_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.57	0.00	0.00	0.00	1.61	1.54	0.00	280.64	70.56	55.84	24.87	0.00	0.00	10.75	3.49	0.00	23.00	5.08	32.05	12.62	16.65	178.24	22.94
17	ER3d	ExonRegion	0	0.86	0.73	0.17	0.72	0.00	0.73	2.50	0.05	0.63	0.25	0.31	0.17	0.10	272.52	97.55	70.84	20.09	2.88	14.38	9.54	5.55	0.05	19.54	4.44	53.56	5.15	11.08	87.56	16.35