Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CDK3	Gene	0	23.81	8.02	9.23	13.51	3.20	8.38	12.61	13.97	12.28	7.88	3.50	9.88	2.47	14.82	33.60	26.91	30.58	18.94	10.57	16.27	6.92	3.02	2.04	20.15	9.67	5.39	1.87	9.34	5.06
2	426803	Transcript	0	7.03	2.66	1.50	2.85	1.08	4.50	2.41	2.88	4.73	2.88	1.40	3.75	0.26	4.05	7.21	6.74	9.47	5.78	6.58	5.20	3.13	0.48	0.32	5.88	3.06	1.59	0.82	2.66	1.67
3	293215	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	448471	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	425876	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	Ix_SR1	SilentIntronRegion	0	1.91	0.00	1.00	3.22	2.19	1.20	0.60	3.01	0.80	0.00	0.00	0.39	0.70	0.77	2.46	0.00	1.22	0.73	0.00	2.88	0.64	0.00	0.00	0.50	0.86	0.00	3.02	0.73	0.00
10	Ix_AR1	ActiveIntronRegion	0	2.74	0.00	0.42	1.82	2.48	0.40	0.51	1.43	1.49	0.70	0.00	1.22	0.78	0.87	0.00	0.00	2.09	1.70	0.81	1.40	0.72	0.00	0.00	1.34	2.48	0.00	2.31	0.83	0.00
11	Ix_SR2	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.89	0.03	0.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.51	0.00	2.16	2.24	0.00	0.00	0.00	0.18	0.00	0.00	0.00	0.00
12	Ix_AR2	ActiveIntronRegion	0	1.10	0.00	0.43	1.85	0.00	0.71	0.33	1.66	0.86	1.22	0.00	0.00	0.00	0.00	0.93	0.12	0.41	0.00	1.94	2.13	0.73	0.93	0.47	0.55	2.16	0.17	0.00	0.42	0.00
13	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER3a	ExonRegion	0	0.00	0.00	0.00	3.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.62	0.00	0.00	0.00	0.94	0.00	0.00	0.00	0.00	0.00	0.53	0.00
16	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	Ix_SR1	SilentIntronRegion	0	0.52	0.57	0.00	0.00	1.19	0.34	0.00	0.00	0.55	1.76	0.87	0.90	0.00	0.00	0.00	0.44	2.91	0.47	2.34	0.67	0.00	0.00	0.88	0.00	0.35	0.77	0.00	1.19	0.33
18	ER4a	ExonRegion	0	7.36	1.50	5.02	9.52	0.98	1.37	2.78	3.07	2.59	1.24	0.52	1.61	0.09	3.79	9.81	4.35	10.06	7.84	2.66	4.87	1.94	1.43	0.84	2.53	3.00	2.17	0.49	1.88	1.25
19	E4_Ab	KnownBoundary	0	4.84	0.00	4.68	20.92	0.00	0.00	8.47	2.54	8.25	5.59	1.61	1.63	0.00	5.34	16.74	2.75	14.00	14.64	8.09	11.91	2.05	2.19	0.00	5.32	7.05	1.97	0.00	1.93	0.00
20	ER4b	ExonRegion	0	13.53	0.00	1.29	4.32	0.00	1.06	6.97	9.51	4.66	3.74	0.51	2.60	1.09	6.47	19.28	9.21	15.06	13.82	1.71	3.13	3.27	2.45	0.33	5.22	6.56	2.89	0.00	2.24	0.73
21	E4_Da	KnownBoundary	0	8.26	0.00	0.00	0.00	0.00	1.53	4.69	9.65	3.26	0.00	0.00	4.01	0.00	5.61	0.00	13.31	14.11	4.62	0.00	0.00	5.58	2.48	2.07	3.05	8.71	5.97	0.00	0.00	1.62
22	E4a_E4d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER4c	ExonRegion	0	17.04	3.72	2.99	6.90	1.34	4.24	5.32	5.27	5.16	4.79	1.06	4.71	1.06	5.30	23.02	21.40	16.65	18.16	4.79	5.03	3.49	1.61	0.65	9.00	6.42	4.11	0.25	5.92	1.27
24	E4_Ac	KnownBoundary	0	21.65	18.52	2.57	0.00	0.00	15.88	9.38	0.00	5.76	3.95	2.97	5.66	1.62	6.94	25.91	55.54	29.96	23.89	0.00	3.72	1.52	0.00	2.02	16.57	3.33	0.00	0.00	23.18	1.58
25	ER4d	ExonRegion	0	18.48	4.35	7.58	9.98	0.00	14.53	5.94	5.92	7.53	6.73	1.25	10.10	4.90	11.57	31.86	44.77	33.15	18.40	5.02	5.85	6.25	1.71	1.20	16.28	8.15	4.99	1.39	9.01	1.69
26	E4_Ad	KnownBoundary	0	33.39	4.85	10.59	29.98	0.00	11.28	5.61	14.13	11.24	3.44	3.13	4.52	6.46	13.85	26.51	43.22	30.39	4.62	0.00	8.27	7.78	2.38	2.12	19.50	12.35	6.14	0.00	10.38	1.39
27	ER4e	ExonRegion	0	51.11	18.33	14.97	18.99	9.65	18.76	19.75	22.55	14.37	14.17	2.34	13.13	5.65	20.72	34.86	40.77	46.79	31.54	15.23	22.51	8.66	8.05	5.24	36.15	11.41	4.03	2.04	15.79	7.08
28	E4_Db	NovelBoundary	0	21.65	9.21	11.93	0.00	0.00	15.92	13.73	14.58	13.43	4.07	0.00	6.60	1.62	14.87	23.12	48.73	33.13	9.25	0.00	19.93	6.14	7.34	1.87	28.17	3.49	4.12	4.52	10.74	1.55
29	E4b_E5a	KnownJunction	0	40.23	0.00	6.95	26.53	0.00	3.15	13.62	10.90	16.47	3.75	0.00	8.58	0.00	14.73	16.14	28.23	24.38	18.49	16.18	15.55	7.98	9.04	6.70	29.61	3.49	0.00	6.61	14.51	6.11
30	Ix	Intron	0	23.71	4.31	8.48	5.51	2.25	9.92	8.67	13.29	8.70	6.66	2.56	7.40	3.88	16.34	18.93	21.89	30.50	18.40	10.31	11.31	5.04	2.77	3.06	15.53	9.00	7.48	1.13	7.51	5.45
31	Ix_AR1	ActiveIntronRegion	0	23.84	4.34	8.52	5.54	2.26	9.99	8.72	13.37	8.75	6.70	2.57	7.44	3.90	16.44	19.04	22.01	30.68	18.51	10.37	11.38	5.07	2.79	3.07	15.63	9.06	7.53	1.13	7.55	5.48
32	E5_Aa	NovelBoundary	0	30.67	3.49	17.34	37.10	7.07	9.78	10.58	31.00	8.71	3.56	3.10	7.20	2.83	18.30	32.89	25.55	36.31	18.49	8.09	7.86	5.41	7.00	0.00	28.59	15.12	7.21	0.00	6.56	4.85
33	ER5a	ExonRegion	0	52.63	6.40	14.37	36.09	6.20	13.01	24.11	43.08	25.73	14.99	1.62	20.17	4.21	27.13	62.97	37.64	52.26	43.95	26.63	38.16	11.61	6.45	7.95	43.91	16.44	14.81	2.32	21.88	15.06
34	E5_Da	NovelBoundary	0	2.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.83	0.00	0.00	1.54	0.00	0.00	0.00	6.58	4.46	0.00	0.00	0.00	0.00	2.48	0.00	0.00	0.00	4.29	0.00	0.00	0.00
35	E5a_E6a	KnownJunction	0	69.13	0.00	22.30	48.53	0.00	10.93	28.09	31.25	21.13	13.66	8.67	29.49	5.00	35.74	101.25	45.36	81.96	46.88	0.00	33.49	13.20	4.28	9.21	42.11	18.90	12.40	1.89	22.38	18.42
36	Ix_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00
37	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	8.70	0.00	1.49	0.00	0.00	3.31	0.00	1.09	0.00	0.00	12.92	0.00	0.00	13.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER6a	ExonRegion	0	60.02	7.38	24.44	29.31	12.19	16.81	28.90	42.56	22.24	14.09	6.87	25.39	4.46	36.59	62.72	54.00	71.00	39.79	16.31	25.88	11.61	10.32	5.59	46.54	23.38	15.86	7.55	26.00	9.96
39	E6_Da	NovelBoundary	0	0.00	0.00	0.97	0.00	0.00	1.92	0.00	6.72	1.37	0.00	0.00	0.00	0.00	0.00	0.00	3.44	2.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00
40	E6a_E7a	KnownJunction	0	62.17	14.83	30.89	30.41	5.60	25.25	22.20	30.95	29.54	9.35	11.07	17.17	4.87	25.59	41.46	55.31	52.29	61.65	24.28	28.20	20.22	8.99	1.97	45.88	17.20	3.56	11.33	29.74	4.99
41	Ix	Intron	0	4.16	0.00	0.81	0.00	0.00	1.34	0.00	0.89	0.00	0.70	0.00	0.60	0.00	1.32	0.00	3.62	1.45	0.94	3.10	5.35	0.00	0.00	0.00	2.09	1.39	0.76	0.00	0.00	0.00
42	Ix_SR1	SilentIntronRegion	0	4.25	0.00	0.83	0.00	0.00	1.36	0.00	0.91	0.00	0.71	0.00	0.61	0.00	1.35	0.00	3.69	1.48	0.95	3.16	5.46	0.00	0.00	0.00	2.13	1.42	0.78	0.00	0.00	0.00
43	E7_Aa	NovelBoundary	0	0.00	4.85	4.14	10.35	0.00	0.00	0.00	4.88	0.00	3.91	0.00	0.00	0.00	1.93	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	8.08	1.93	0.00	2.53	3.82	0.00
44	ER7a	ExonRegion	0	49.80	10.32	25.68	34.72	4.43	16.80	27.82	34.57	27.63	16.04	8.57	25.47	5.20	36.25	68.45	52.98	76.49	36.84	16.81	35.27	15.75	7.14	5.00	40.60	25.72	15.06	8.35	28.41	10.69
45	E7_Da	NovelBoundary	0	0.00	27.44	0.00	0.00	0.00	1.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00
46	E7a_E8a	KnownJunction	0	72.38	8.63	20.06	47.67	12.23	24.48	17.39	16.87	23.66	16.02	2.91	13.10	1.24	32.17	27.51	62.58	67.82	39.17	40.46	34.07	14.72	0.00	2.51	44.20	21.78	14.33	0.00	28.49	9.21
47	Ix	Intron	0	0.00	0.00	0.00	0.00	0.00	0.00	3.35	1.02	0.00	0.80	0.00	0.00	0.00	1.01	0.00	0.00	1.66	1.07	0.00	0.00	0.79	0.00	0.00	3.58	0.79	0.00	0.00	1.81	0.00
48	Ix_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	3.43	1.04	0.00	0.82	0.00	0.00	0.00	1.03	0.00	0.00	1.69	1.09	0.00	0.00	0.81	0.00	0.00	3.66	0.81	0.00	0.00	1.85	0.00
49	E8_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.08	1.42	0.00	0.00	0.00	0.00	3.82	5.58	0.00	0.00	4.13	0.00	0.00	0.00	0.00	3.79	0.00	0.00	0.00	0.00
50	ER8a	ExonRegion	0	48.02	24.06	22.84	32.69	16.51	18.94	29.41	39.04	33.02	12.46	13.55	23.71	4.64	36.06	63.20	69.20	72.62	40.30	20.23	35.33	16.39	4.88	5.83	48.40	31.08	9.52	6.16	17.10	10.08
51	E8_Da	KnownBoundary	0	16.46	13.09	4.98	0.00	0.00	1.96	2.86	2.44	5.39	4.07	0.00	5.72	0.00	7.69	19.33	7.11	10.74	9.25	8.09	7.94	0.00	0.00	0.00	11.48	5.23	0.00	0.00	4.04	0.00
52	E8a_E8b	KnownJunction	0	52.32	33.16	31.19	42.49	7.07	8.25	36.16	31.55	52.26	15.58	24.14	24.07	6.66	36.71	50.03	64.26	81.73	22.99	24.28	30.60	22.34	11.43	9.55	53.48	27.73	2.19	20.72	28.85	15.52
53	ER8b	ExonRegion	0	14.06	5.32	3.00	5.69	2.15	9.01	4.81	5.77	9.46	5.76	2.81	7.51	0.52	8.10	14.43	13.48	18.95	11.56	13.16	10.39	6.26	0.97	0.65	11.77	6.12	3.19	1.63	5.32	3.34
54	E8_Ab	KnownBoundary	0	22.65	9.50	7.80	0.00	0.00	3.03	2.92	6.72	4.60	1.52	4.84	4.97	0.00	5.58	35.68	18.90	12.20	4.62	8.09	7.61	6.02	0.00	0.00	24.23	11.44	1.76	0.00	10.51	1.52
55	ER8c	ExonRegion	0	50.90	21.44	27.48	30.76	5.99	18.37	39.66	34.59	43.60	18.48	15.15	28.90	8.17	42.78	85.06	75.42	83.38	41.43	23.90	47.12	14.81	6.06	7.10	59.43	30.05	12.90	5.57	26.77	14.27
56	E8_Db	NovelBoundary	0	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	1.67	3.79	0.00	0.00	0.00	0.00	0.00	0.00	1.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	E8b_E9a	KnownJunction	0	43.71	26.47	20.68	49.18	7.37	12.51	29.87	21.45	30.30	9.55	10.09	28.98	5.48	34.72	114.21	61.05	61.56	33.13	8.09	45.40	12.84	1.80	4.09	30.63	23.45	11.93	0.00	22.78	11.42
58	E9_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.04	0.00	0.00	1.10	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
59	ER9a	ExonRegion	0	50.80	22.73	22.49	23.57	6.67	17.15	35.23	33.21	24.60	20.14	7.55	24.83	5.83	36.10	81.33	63.41	66.92	41.34	20.68	39.77	18.58	5.40	3.79	43.67	18.07	13.12	2.02	20.41	16.07
60	E9_Da	KnownBoundary	0	68.78	23.56	16.87	27.18	0.00	15.46	26.55	43.20	19.34	36.07	4.46	27.68	14.55	34.41	75.74	101.21	74.73	27.74	24.28	60.54	15.60	1.94	0.00	60.53	20.76	22.32	0.00	25.21	22.42
61	ER9b	ExonRegion	0	34.66	15.81	9.68	16.83	2.95	11.58	18.57	19.44	17.27	13.82	4.33	10.09	5.22	21.56	66.20	42.88	38.38	22.32	18.26	28.11	9.33	4.31	1.53	35.75	9.86	4.74	1.55	9.92	6.32
62	ER9c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34
63	ER9d	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00