Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	MNT	Gene	0	27.86	37.03	55.85	6.37	17.45	39.04	7.61	7.09	45.76	47.80	34.69	40.23	55.26	58.26	34.09	47.17	50.55	61.06	16.89	19.07	34.73	25.86	43.36	67.04	40.45	74.56	26.64	42.51	47.29
2	174618	Transcript	0	18.93	24.91	38.87	4.82	12.03	28.43	6.73	4.85	35.19	32.84	23.71	27.55	38.90	40.63	26.13	29.08	33.55	43.72	11.44	13.54	26.99	19.41	30.45	51.08	29.85	50.00	20.47	28.56	35.82
3	404961	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	IG44_AR1	ActiveIntergenicRegion	0	1.24	0.46	0.24	1.03	2.11	1.19	0.58	1.59	3.31	1.66	1.37	1.78	0.47	1.10	4.37	1.33	5.79	2.78	0.46	1.98	2.47	0.52	0.26	2.17	1.24	2.26	1.06	1.17	0.58
5	ER1a	ExonRegion	0	1.93	1.45	1.65	0.00	1.18	2.38	0.00	0.00	2.80	2.57	0.65	0.00	3.68	1.43	1.90	6.69	1.94	4.90	0.00	0.00	5.13	0.37	2.51	0.80	1.55	6.45	2.11	4.78	2.96
6	E1_Ab	KnownBoundary	0	13.04	8.34	4.96	0.00	12.97	12.43	2.75	0.00	11.48	13.14	4.84	2.53	11.05	6.07	8.37	31.29	7.05	23.12	0.00	0.00	30.80	0.00	4.43	2.69	7.99	17.17	9.34	16.94	10.56
7	ER1b	ExonRegion	0	12.99	14.88	20.20	1.74	13.09	31.00	3.23	2.84	10.65	35.33	15.35	6.61	26.43	29.85	12.88	54.38	13.71	41.74	4.63	14.00	33.66	16.30	26.84	20.23	19.96	49.83	6.75	20.49	24.32
8	E1a_E2a	KnownJunction	0	40.76	26.18	25.99	0.00	6.63	8.29	2.35	6.57	3.11	38.67	15.91	13.19	27.00	75.04	9.97	50.80	17.80	36.99	24.28	6.29	2.05	16.58	14.38	18.42	17.12	29.40	2.34	21.93	34.17
9	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E1a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	1.36	0.00	0.00	1.13	0.00	0.00	0.00	4.88	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	0	15.60	15.57	30.22	8.16	11.28	15.64	2.42	2.34	4.88	24.55	13.89	15.58	23.31	34.08	15.40	33.84	18.16	37.54	8.44	13.16	13.31	12.76	19.08	21.77	15.53	27.45	7.37	14.46	19.79
12	E2a_E3a	KnownJunction	1	5.13	31.80	55.06	0.00	18.13	45.93	2.52	2.19	17.54	46.74	52.99	30.21	30.41	47.59	8.37	76.42	27.01	51.50	0.00	14.72	33.01	11.18	33.83	79.38	58.46	62.78	12.23	44.53	24.79
13	E2a_E4a	NovelJunction	0	0.00	3.68	2.87	0.00	0.00	1.92	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	2.66	4.62	0.00	4.13	1.85	0.00	0.00	0.00	0.00	3.43	0.00	0.00	1.55
14	ER3a	ExonRegion	0	17.30	32.22	73.26	0.52	19.10	44.94	4.46	7.36	13.21	59.30	61.35	47.94	44.48	83.30	14.00	64.83	38.04	40.09	18.10	14.66	46.39	21.55	35.99	74.68	50.47	63.58	34.32	39.39	28.76
15	E3a_E4a	KnownJunction	0	21.77	43.14	70.63	0.00	34.48	37.60	2.52	4.08	6.30	82.49	68.46	59.58	56.14	99.37	18.14	72.14	39.59	46.23	40.46	14.64	52.75	24.45	33.05	68.85	39.59	50.08	40.35	31.95	24.93
16	ER4a	ExonRegion	0	16.75	45.11	84.30	0.59	21.22	43.02	4.73	4.08	10.81	52.65	58.22	83.82	70.17	85.25	22.10	48.76	87.70	53.93	18.35	20.08	40.04	20.67	41.62	58.91	47.97	75.96	30.48	45.82	36.39
17	E4a_E5a	KnownJunction	1	32.50	41.49	65.73	8.63	12.38	45.12	2.46	9.06	15.10	56.40	53.46	69.46	56.08	85.46	41.26	57.76	92.36	36.99	24.28	21.25	40.15	21.39	46.00	52.94	79.45	78.58	26.09	52.44	32.88
18	I4_AR1	ActiveIntronRegion	0	3.12	0.00	0.00	4.39	0.00	1.71	0.49	0.00	0.00	1.05	0.00	0.90	0.00	0.00	0.00	0.00	0.46	1.40	0.00	0.00	1.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	I4_AR2	ActiveIntronRegion	0	0.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.01	0.00	0.80	0.00	0.78	4.13	0.00	2.28	3.16	0.00	0.00	0.05	2.53	0.00	0.00	0.00	2.10	1.32	0.00	1.08
20	I4_SR3	SilentIntronRegion	0	1.63	0.00	0.45	0.00	0.00	2.31	2.58	0.00	0.00	1.73	1.00	2.87	2.55	1.43	0.00	0.00	3.01	0.00	0.00	0.00	0.00	1.48	1.08	3.44	0.69	4.68	0.37	2.80	0.13
21	I4_AR3	ActiveIntronRegion	0	5.30	2.30	3.52	2.19	1.00	5.52	1.80	2.07	2.18	7.07	2.45	1.64	3.31	5.08	3.47	2.53	3.69	9.01	3.91	1.41	1.31	1.22	4.13	6.90	2.26	5.71	0.93	4.54	1.57
22	I4	Intron	0	9.97	4.78	5.40	1.80	1.84	4.73	1.44	0.39	6.51	3.93	1.80	4.94	3.72	5.55	8.96	3.64	10.88	9.41	2.14	2.24	2.63	1.36	1.29	8.56	3.06	9.29	2.30	11.13	1.43
23	I4_SR1	SilentIntronRegion	0	8.46	7.38	6.62	2.32	1.58	5.44	1.63	0.60	7.42	4.07	1.81	4.61	3.23	4.11	10.40	4.72	11.54	10.88	3.10	0.89	2.99	0.70	1.46	5.93	3.48	10.43	3.10	11.74	3.85
24	I4_AR2	ActiveIntronRegion	0	11.79	13.14	4.49	3.66	0.00	9.16	0.00	0.00	8.61	5.78	1.59	7.42	1.30	4.69	22.40	2.53	6.34	9.55	0.00	0.00	2.85	1.80	0.00	12.55	0.00	6.81	5.49	13.86	6.71
25	I4_SR2	SilentIntronRegion	0	7.78	4.94	5.98	2.24	0.79	5.41	1.14	0.00	8.52	4.15	2.95	4.46	3.95	3.90	6.38	3.16	8.63	8.23	2.37	3.55	2.87	1.28	0.58	10.74	1.69	5.54	2.41	11.30	1.00
26	I4_AR3	ActiveIntronRegion	0	12.00	3.20	4.42	1.27	2.59	3.92	1.51	0.49	4.90	3.73	1.16	5.36	3.88	7.27	9.48	3.34	11.83	9.26	1.52	2.30	2.30	1.76	1.60	8.78	3.61	10.76	1.78	10.71	0.29
27	E5_Aa	NovelBoundary	0	16.57	9.70	4.34	32.35	0.00	6.91	0.00	0.00	15.96	10.95	2.88	8.28	5.80	8.51	9.97	3.82	17.08	19.26	8.09	0.00	3.69	0.00	0.00	27.87	5.53	10.94	0.00	15.10	1.49
28	ER5a	ExonRegion	1	42.57	38.04	54.27	3.45	12.39	50.62	5.74	7.63	13.17	61.84	55.68	63.45	68.61	90.35	41.44	73.26	95.19	77.22	26.01	17.72	37.88	34.08	57.21	62.76	45.52	97.25	22.98	70.24	43.03
29	E5a_E6a	KnownJunction	0	20.76	20.55	41.18	0.00	11.79	15.31	2.92	8.36	13.00	41.14	20.28	54.94	44.23	79.81	33.69	44.29	81.73	51.63	0.00	7.77	12.11	20.91	25.31	45.70	28.07	92.22	16.65	32.93	46.48
30	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	1.40	0.00	0.00	3.75	0.00	0.00	0.00	0.00	1.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER6a	ExonRegion	0	27.86	28.33	57.75	4.46	14.88	30.18	7.53	6.28	19.30	34.69	21.17	45.21	53.16	53.98	37.11	46.92	56.51	82.12	16.41	15.64	18.14	20.68	39.23	41.80	25.12	75.07	17.77	37.87	40.39
32	E6_Da	KnownBoundary	0	30.50	18.81	70.93	0.00	6.78	48.46	12.76	4.73	46.99	60.72	26.76	62.02	87.76	70.79	33.49	79.41	47.74	103.26	24.28	26.13	16.45	26.98	56.83	42.17	30.84	171.53	59.54	71.98	67.51
33	E6a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER6b	ExonRegion	0	21.20	22.17	46.81	5.85	12.67	34.41	10.96	4.68	21.45	36.56	25.98	35.43	44.45	53.34	34.54	31.18	38.01	64.48	13.38	16.85	30.70	25.43	35.52	56.40	33.41	51.05	21.16	26.17	42.56
35	E6_Ab	KnownBoundary	0	42.23	50.71	105.14	0.00	14.15	66.80	16.48	9.51	40.99	42.10	34.61	45.78	75.79	75.97	88.90	39.32	44.43	102.36	24.28	7.53	74.04	42.01	54.62	98.46	55.35	115.44	20.77	40.66	72.13
36	ER6c	ExonRegion	0	36.40	44.87	64.93	4.19	15.26	51.37	14.02	7.63	46.88	66.85	55.37	49.55	71.41	72.69	42.16	48.44	51.49	75.48	21.54	18.25	49.99	32.61	59.07	101.81	61.16	84.58	40.26	51.96	65.32
37	E6_Db	KnownBoundary	0	43.12	47.02	72.03	0.00	39.94	33.07	5.84	17.87	62.61	42.54	41.22	53.85	73.31	55.88	26.11	34.58	41.66	56.77	8.09	7.19	41.35	60.97	56.54	93.31	64.56	60.47	31.06	38.60	85.37
38	ER6d	ExonRegion	0	33.67	51.12	68.15	8.60	22.22	48.50	9.22	9.88	81.32	59.38	44.49	47.21	68.56	67.11	41.94	49.38	60.70	61.78	20.94	23.77	45.13	32.44	53.30	96.03	54.61	92.50	38.15	54.74	61.96
39	IG43_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.67	0.00	0.00	0.00	0.00	0.00	1.19	0.00	1.36	0.00	0.00	0.00	0.00	1.02	0.00