Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ZFP90	Gene	0	58.72	64.86	47.91	95.23	21.63	99.19	45.97	22.71	58.47	110.98	146.69	146.29	43.88	59.20	64.86	74.00	152.51	58.00	107.41	38.42	120.96	35.10	59.96	100.06	110.43	53.27	64.36	81.01	59.53
2	398253	Transcript	0	54.35	40.06	29.04	78.63	11.27	54.67	20.46	18.57	19.04	68.81	89.86	74.43	24.75	41.41	35.18	57.62	82.95	44.57	76.39	26.94	63.80	19.41	42.38	39.94	73.23	36.50	24.81	68.19	30.15
3	327567	Transcript	0	179.61	186.34	233.35	284.50	106.40	203.42	157.68	89.83	161.76	329.87	266.43	501.41	119.64	293.22	37.67	308.83	503.37	9.76	0.00	104.28	337.53	137.25	149.77	252.54	230.65	73.47	264.24	243.93	262.72
4	IG28_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.23	3.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER1a	ExonRegion	0	32.34	4.59	3.93	18.07	0.00	13.56	14.02	2.76	4.26	19.11	5.90	14.19	9.25	8.30	18.28	23.52	14.88	28.34	24.23	11.82	18.88	8.40	10.74	15.22	14.31	14.72	2.21	8.94	4.03
6	E1_Da	NovelBoundary	0	0.00	3.68	0.00	0.00	0.00	0.00	0.00	7.42	4.26	1.80	0.00	0.00	0.00	0.84	15.55	0.00	2.34	0.00	0.00	0.00	0.00	0.00	0.00	5.92	1.93	1.93	0.00	0.00	0.00
7	E1a_E2a	KnownJunction	0	29.02	17.26	11.11	38.18	0.00	11.89	17.68	0.00	9.41	45.38	25.56	31.99	15.38	19.30	74.74	54.24	39.21	45.98	40.46	7.53	21.78	5.93	27.04	13.28	31.26	22.14	6.11	29.92	17.86
8	I1_AR1	ActiveIntronRegion	0	1.16	0.00	0.36	0.00	0.00	1.26	0.00	0.00	2.83	1.41	2.08	2.41	0.00	0.29	3.03	0.00	3.33	2.15	1.36	0.00	3.33	0.00	0.00	3.48	0.61	2.65	0.00	1.24	1.85
9	I1_AR2	ActiveIntronRegion	0	1.44	0.69	0.25	0.77	0.00	0.03	0.00	0.00	0.76	1.71	1.16	1.98	1.30	0.95	1.49	0.00	9.06	0.63	1.03	0.00	1.38	0.00	0.19	3.70	0.77	1.01	0.00	1.66	1.36
10	I1_AR3	ActiveIntronRegion	0	1.56	2.03	0.31	1.10	0.00	1.56	0.57	0.80	2.62	1.10	0.67	3.67	1.42	0.77	0.00	0.86	11.72	1.64	3.17	0.00	0.00	0.00	0.26	1.52	0.61	0.22	0.00	1.85	1.14
11	I1_AR4	ActiveIntronRegion	0	2.14	9.85	1.12	7.31	0.00	0.00	0.00	3.68	0.00	1.44	0.00	2.47	0.65	0.00	11.20	0.00	7.60	0.00	4.53	0.00	0.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.36	0.00	0.00	0.00
13	ER2a	ExonRegion	1	48.15	36.68	43.26	96.33	16.67	43.87	22.32	26.40	15.15	58.35	84.31	73.26	25.73	41.30	28.66	34.43	77.00	29.81	60.23	25.16	37.83	16.07	56.88	34.84	54.82	43.87	23.82	82.95	30.00
14	E2_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	1.27	1.87	0.00	0.00	0.00	5.74	0.92	0.00	0.00	0.00	10.07	0.00	1.87	2.69	0.00	4.38	0.00	0.00	0.00
15	E2a_E3a	KnownJunction	1	65.77	46.54	32.21	81.32	21.66	42.70	10.30	16.12	17.72	35.03	75.95	60.48	35.95	29.34	16.94	45.06	73.29	19.26	48.33	21.01	35.98	17.45	28.02	42.59	67.59	39.91	38.57	110.58	23.21
16	I2	Intron	0	2.57	0.48	2.01	3.23	0.73	4.33	3.33	1.10	0.59	4.55	4.82	8.78	0.87	4.55	4.68	2.77	5.37	4.67	11.98	3.08	2.78	2.43	2.98	2.58	4.72	3.30	0.55	3.18	1.20
17	I2_SR1	SilentIntronRegion	0	0.55	0.00	0.00	0.00	0.00	2.92	1.57	0.00	0.00	0.00	0.39	1.02	0.00	1.55	1.62	0.94	3.39	2.82	3.50	0.00	1.08	1.27	0.65	0.76	0.12	3.28	0.00	0.57	0.94
18	I2_AR1	ActiveIntronRegion	0	4.12	0.85	3.53	5.68	1.29	5.43	4.68	1.95	1.04	8.01	8.20	14.70	1.54	6.85	7.02	4.17	6.92	6.11	18.46	5.42	4.09	3.33	4.77	3.98	8.22	3.35	0.97	5.17	1.41
19	E3_Aa	NovelBoundary	0	25.19	17.35	8.97	89.08	7.37	12.39	15.91	1.94	14.22	21.73	42.64	40.57	3.41	14.40	16.74	17.44	19.97	9.25	24.28	19.19	26.51	7.34	13.30	13.82	26.37	4.38	0.00	21.79	3.30
20	ER3a	ExonRegion	1	88.46	42.22	37.75	111.82	13.39	71.11	25.95	28.73	29.77	120.16	132.93	106.57	36.49	61.45	36.64	89.37	116.18	63.65	127.81	40.61	74.38	25.54	62.44	55.15	98.00	65.52	29.53	120.89	49.07
21	E3_Da	NovelBoundary	0	8.20	0.00	0.00	0.00	0.00	9.02	5.61	0.00	2.68	3.04	1.30	7.50	0.00	4.28	7.77	0.00	23.14	4.62	0.00	0.00	3.57	4.86	0.00	5.44	10.57	4.16	0.00	0.00	0.00
22	E3a_E4a	KnownJunction	1	78.51	72.81	27.33	123.59	7.07	133.48	10.99	43.94	27.01	104.46	138.21	98.70	30.32	74.34	50.63	94.02	99.69	83.22	129.48	44.91	132.52	28.54	54.32	53.71	142.26	32.19	9.79	75.93	49.32
23	I3	Intron	0	7.12	5.99	1.56	4.07	0.89	11.42	2.33	1.01	4.91	7.37	4.37	7.67	1.22	5.78	6.09	10.06	33.48	5.55	11.52	2.93	8.61	0.69	0.92	3.88	5.62	1.78	1.52	3.83	1.53
24	I3_AR1	ActiveIntronRegion	0	11.88	4.63	3.97	2.94	0.60	9.50	1.79	1.89	2.45	8.62	4.06	7.44	0.77	6.63	2.83	10.78	40.85	3.98	11.20	3.54	7.22	1.48	1.71	7.42	7.70	2.71	1.18	7.76	2.00
25	I3_SR1	SilentIntronRegion	0	7.33	6.33	1.31	4.33	1.21	12.82	2.68	1.30	5.01	7.25	3.85	8.48	1.57	6.06	8.01	10.29	34.76	5.91	11.88	4.26	9.82	0.60	0.81	3.55	5.11	1.82	1.77	3.76	1.96
26	I3_AR2	ActiveIntronRegion	0	2.89	3.79	0.98	6.38	0.00	10.83	1.49	0.00	2.07	6.48	6.11	5.70	0.77	3.77	5.03	7.19	23.95	3.80	10.13	0.00	6.53	0.14	0.70	2.41	5.14	1.63	2.12	1.12	0.30
27	I3_SR2	SilentIntronRegion	0	2.79	12.15	0.56	0.00	0.00	5.50	0.00	0.00	5.73	7.80	2.62	7.17	0.00	4.44	0.56	4.56	35.46	2.73	27.15	0.00	13.98	1.80	1.81	2.15	9.43	0.00	7.33	2.61	0.00
28	I3_AR3	ActiveIntronRegion	0	7.17	7.34	1.53	1.87	0.64	7.90	2.10	0.24	8.56	7.85	5.12	6.47	0.59	6.00	1.80	11.40	32.35	6.81	11.22	0.00	6.55	1.01	0.99	4.28	6.62	1.23	0.09	4.05	0.70
29	E4_Aa	NovelBoundary	0	28.55	15.71	7.40	0.00	6.34	17.76	2.29	4.68	18.91	23.69	17.78	18.52	3.15	13.09	0.00	28.46	46.17	9.25	48.55	2.98	28.40	1.85	4.88	8.37	24.21	17.55	2.39	15.37	9.54
30	ER4a	ExonRegion	0	75.42	66.51	48.35	116.18	14.38	87.44	30.71	19.56	27.17	117.38	162.60	109.40	32.64	66.90	35.36	91.25	141.30	65.71	137.51	44.70	126.73	31.34	66.37	59.35	118.50	49.38	52.20	85.62	39.46
31	E4_Ab	KnownBoundary	0	45.06	66.90	48.19	147.32	20.34	110.35	24.95	4.58	41.78	105.82	145.93	115.48	17.39	48.15	41.66	96.85	144.62	103.77	201.86	42.09	147.97	8.46	81.85	35.77	81.11	25.23	39.61	49.56	34.30
32	ER4b	ExonRegion	0	59.59	85.59	54.25	120.78	18.68	98.38	29.22	20.22	29.36	99.88	152.82	149.25	29.91	65.44	49.25	90.55	159.38	71.22	123.23	36.76	119.20	33.91	64.06	65.01	103.30	32.26	65.37	76.42	49.73
33	E4_Da	KnownBoundary	0	81.99	105.58	58.48	154.00	26.08	75.62	46.57	22.89	20.92	92.87	177.94	189.27	24.65	75.47	36.08	105.87	154.01	50.73	89.02	20.84	112.35	61.84	58.85	67.71	146.27	41.93	33.55	114.49	42.95
34	E4a_E4c	KnownJunction	0	179.61	186.34	233.35	284.50	106.40	203.42	157.68	89.83	161.76	329.87	266.43	501.41	119.64	293.22	37.67	308.83	503.37	9.76	0.00	104.28	337.53	137.25	149.77	252.54	230.65	73.47	264.24	243.93	262.72
35	ER4c	ExonRegion	0	70.55	71.10	56.25	122.21	28.25	86.40	51.29	28.87	39.25	117.75	176.00	170.15	35.31	69.70	50.57	86.66	180.31	64.35	119.48	45.16	121.84	38.85	74.08	78.29	129.23	57.89	61.09	97.51	57.78
36	E4_Ac	KnownBoundary	0	56.15	96.56	66.57	138.91	18.86	96.19	59.33	40.86	54.14	124.47	148.11	217.07	43.40	96.74	106.04	145.12	215.73	50.86	178.03	70.96	165.86	34.91	55.06	133.69	140.78	45.53	80.66	81.87	101.02
37	ER4d	ExonRegion	0	52.61	64.59	46.29	82.50	21.74	111.44	50.51	21.41	76.56	113.70	141.53	151.55	51.73	56.28	79.26	68.76	152.82	55.71	101.84	36.76	128.78	36.48	55.38	123.37	109.47	55.22	72.05	75.66	67.11
38	ER4e	ExonRegion	0	0.92	2.82	1.12	0.00	0.00	1.57	0.86	0.79	1.61	1.65	7.31	5.12	1.67	2.07	4.80	0.00	4.72	0.78	0.00	1.61	4.28	2.58	1.55	7.07	3.06	2.92	0.00	1.40	0.58
39	IG29_SR1	SilentIntergenicRegion	0	1.07	1.61	0.84	0.00	0.00	0.69	0.00	0.00	0.00	0.72	0.00	0.62	1.95	0.00	0.00	0.00	0.75	0.00	1.60	0.00	0.71	0.00	0.00	0.00	1.43	1.57	0.00	0.00	0.00
40	IG29_SR3	SilentIntergenicRegion	0	2.83	1.66	0.00	0.00	0.00	0.95	0.00	0.32	1.86	1.02	1.56	1.06	1.50	0.62	2.54	1.28	8.05	0.68	1.10	0.00	0.36	0.00	0.31	1.59	1.84	0.27	0.00	2.30	1.06
41	IG29_AR3	ActiveIntergenicRegion	0	1.56	0.37	0.19	0.00	0.00	0.48	0.00	0.00	1.21	0.98	0.73	1.98	0.34	1.25	4.44	1.99	8.53	0.87	0.37	0.00	0.58	0.21	0.42	1.90	2.39	0.72	0.00	2.78	1.53
42	IG29_AR4	ActiveIntergenicRegion	0	0.92	1.40	0.00	1.56	0.00	2.07	0.88	0.80	4.40	2.52	2.59	1.21	0.00	0.49	5.15	2.55	12.32	0.00	0.68	0.00	2.49	1.18	0.00	5.16	3.12	1.03	0.00	2.13	1.31
43	IG29_AR5	ActiveIntergenicRegion	0	3.84	0.00	0.00	0.00	0.00	3.67	0.00	6.59	0.00	0.00	0.00	1.11	0.00	0.00	0.00	0.00	0.00	3.45	2.86	0.00	1.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00