Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	COX4I1	Gene	0	3401.94	2065.82	2436.73	4723.36	2214.62	1752.34	5274.07	5005.04	2898.31	1628.39	1419.57	2158.02	3755.12	1655.21	5589.66	2192.75	2126.11	2102.55	2487.67	3912.51	1501.47	4125.42	2689.42	1802.32	2701.30	2970.89	1349.77	2197.52	1908.25
2	253452	Transcript	0	2999.22	1978.48	2978.58	5851.44	2369.06	1654.86	5404.56	4712.69	2586.29	1460.41	1320.91	2345.92	3767.09	1548.17	5258.48	2165.14	2476.07	2071.47	2385.25	3567.53	1397.30	3601.55	2932.62	1624.85	2289.29	2779.41	1815.94	2392.72	2013.08
3	IG43	Intergenic	0	49.62	17.85	4.84	165.96	203.15	28.34	91.88	20.64	16.86	40.73	13.77	13.18	17.38	4.27	53.23	73.88	1.08	32.98	33.51	37.36	21.15	65.86	86.33	16.34	26.37	53.44	21.86	52.47	17.71
4	IG43_AR1	ActiveIntergenicRegion	0	50.33	18.10	4.89	168.35	206.07	28.75	93.20	20.94	17.10	41.32	13.97	13.37	17.63	4.33	53.99	74.90	1.10	33.44	33.99	37.89	21.46	66.81	87.58	16.57	26.75	54.20	22.18	53.22	17.97
5	ER1a	ExonRegion	0	1296.77	968.67	1787.49	11888.26	2940.48	2268.15	8059.41	2479.19	1252.06	1027.53	829.04	2027.06	2713.28	536.16	3971.97	3851.81	1267.66	2749.14	1638.94	2898.58	2084.73	2292.38	3058.92	409.56	624.76	2302.94	878.26	1688.81	1344.47
6	E1_Da	NovelBoundary	0	0.00	0.00	1.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.61	0.00	3.46	0.00	0.00	2.09	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.53	4.04	0.00
7	E1a_E2a	KnownJunction	0	1287.83	1762.75	6966.03	11730.42	2824.82	2336.36	8279.15	2891.95	1754.22	884.59	519.82	3099.85	4483.62	1134.33	3672.86	3097.43	4634.32	3093.63	1989.62	3107.01	2060.55	2211.07	3946.28	407.40	505.46	2245.05	853.65	2056.65	2515.17
8	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.41	1.48	0.00	1.11	0.00	0.00	0.00	2.83	0.00	0.00	0.00	0.00	3.25	0.00	1.82	0.00	1.40	1.59	1.89	0.00	0.00
9	I1	Intron	0	7.22	1.19	1.77	1.98	3.83	2.73	0.56	0.51	0.93	2.00	1.59	1.22	0.66	2.10	2.71	5.08	2.41	4.74	3.24	1.02	1.78	0.67	1.50	0.40	1.12	2.32	0.59	1.58	1.08
10	I1_AR1	ActiveIntronRegion	0	2.12	0.00	1.86	7.78	13.25	0.00	0.00	1.00	0.00	0.78	6.46	6.34	0.70	1.36	13.41	2.67	0.00	3.14	0.00	0.00	0.32	1.96	0.98	1.28	3.10	4.28	2.98	0.88	7.28
11	I1_SR1	SilentIntronRegion	0	6.84	0.43	1.70	0.97	3.62	1.24	0.00	0.25	0.76	0.97	0.80	0.76	1.22	1.47	2.74	3.09	1.64	1.24	1.72	0.91	0.69	0.73	1.95	0.26	0.58	0.85	0.40	0.88	0.83
12	I1_SR2	SilentIntronRegion	0	10.13	0.47	2.79	1.05	3.85	3.44	1.77	0.81	1.56	2.71	0.00	1.00	0.57	1.72	0.68	2.67	4.31	5.97	4.21	1.41	2.30	0.53	1.33	0.00	1.26	3.45	0.61	2.63	0.56
13	I1_SR3	SilentIntronRegion	0	6.19	3.02	0.66	2.82	0.85	5.08	0.00	0.36	0.75	3.13	2.81	0.43	0.00	3.60	1.82	11.99	2.06	9.21	5.66	1.03	3.08	0.35	1.35	0.66	1.09	2.48	0.00	1.60	0.00
14	E2_Aa	NovelBoundary	0	29.08	24.24	27.98	29.55	0.00	14.27	12.76	2.54	14.04	12.54	1.39	2.95	13.76	5.41	8.37	17.14	1.22	28.51	24.28	19.02	7.62	6.71	9.16	5.20	17.88	36.26	11.93	6.56	6.67
15	I1_AR2	ActiveIntronRegion	0	1.66	8.96	0.00	0.00	1.36	0.69	0.00	0.00	0.26	0.00	5.57	0.73	0.00	4.66	0.00	6.79	0.00	0.25	0.00	0.64	3.37	0.00	0.82	2.15	0.45	0.00	0.00	0.00	0.00
16	ER2a	ExonRegion	0	1425.24	1436.93	3140.60	4957.19	1819.75	1173.17	3813.36	2778.84	1533.33	886.42	811.64	1920.45	2954.57	942.95	2810.07	1342.79	1924.72	1133.23	1660.67	2117.23	951.34	1821.08	1976.40	835.49	1266.91	2113.59	1213.49	1812.40	1686.58
17	E2_Da	NovelBoundary	0	0.00	4.27	1.47	10.14	0.00	16.15	2.69	0.00	1.40	1.60	0.00	0.00	0.00	10.39	7.77	20.04	6.33	13.87	0.00	0.00	5.21	0.00	0.00	3.05	1.67	0.00	0.00	0.00	0.00
18	E2a_E3a	KnownJunction	0	1612.66	1122.10	630.57	1226.64	676.73	783.12	3215.18	3139.78	1977.49	829.55	681.54	1068.44	2125.48	770.52	3138.29	829.02	852.04	781.50	1229.16	1559.38	564.27	2126.86	1128.66	1181.36	1269.91	1757.25	652.13	1481.75	1369.33
19	I2	Intron	0	12.40	8.74	6.27	4.74	5.83	13.92	3.63	2.50	4.98	10.48	7.89	7.26	2.18	12.94	5.52	23.75	21.39	18.49	13.15	5.29	7.86	0.99	2.62	4.70	8.51	3.81	2.32	5.03	2.32
20	I2_SR1	SilentIntronRegion	0	13.75	7.33	4.36	3.90	6.64	15.47	4.16	3.00	4.33	12.64	9.90	8.25	1.16	13.03	4.29	29.50	21.83	21.96	16.85	7.26	8.07	1.57	3.44	3.27	8.08	4.10	2.69	6.65	1.93
21	I2_AR1	ActiveIntronRegion	0	8.83	6.64	0.84	3.69	2.52	6.37	0.00	1.90	1.16	8.18	1.86	3.17	2.34	9.57	2.38	12.78	6.15	3.97	6.58	2.84	5.88	0.00	0.00	0.00	2.21	1.62	0.00	1.68	0.69
22	I2_AR2	ActiveIntronRegion	0	16.19	10.53	6.70	8.14	2.34	15.81	3.62	0.88	5.21	10.43	10.79	8.01	3.11	14.82	8.30	29.50	24.52	18.65	11.41	8.33	8.03	1.44	1.16	2.66	10.01	3.65	5.14	5.92	2.70
23	I2_SR2	SilentIntronRegion	0	10.44	6.29	3.48	9.61	0.00	24.04	4.06	0.00	4.86	11.39	8.67	6.91	2.34	12.43	6.96	27.04	14.41	15.48	8.34	8.51	10.19	2.63	0.00	2.00	4.04	1.71	0.60	3.84	3.28
24	I2_AR4	ActiveIntronRegion	0	10.30	13.91	6.09	3.57	6.49	19.51	7.65	3.18	4.28	7.62	10.40	7.52	1.88	9.36	3.32	21.61	20.70	20.67	18.01	2.63	10.36	0.00	2.67	8.02	10.03	3.59	2.14	2.09	2.11
25	I2_SR3	SilentIntronRegion	0	12.75	9.50	9.04	5.33	8.56	11.75	2.61	2.93	6.05	10.84	6.30	7.40	2.47	15.66	5.53	19.41	26.26	19.03	11.45	3.47	7.73	0.85	3.31	7.48	10.49	4.16	1.48	4.65	3.47
26	I2_AR5	ActiveIntronRegion	0	7.00	5.25	7.59	2.60	1.77	6.74	1.46	1.67	6.31	6.29	1.51	4.15	3.99	8.71	9.69	15.71	11.65	9.21	5.80	3.22	4.92	0.00	1.31	3.12	4.67	3.71	1.66	4.44	0.73
27	E3_Aa	NovelBoundary	0	5.72	0.00	11.81	0.00	0.00	5.33	0.00	0.00	3.78	5.91	0.00	6.72	3.06	12.50	16.14	17.14	8.85	0.00	0.00	6.86	4.01	0.00	0.00	0.00	8.18	5.92	0.00	11.46	1.68
28	ER3a	ExonRegion	0	4826.54	2501.56	1065.43	1471.76	806.74	2972.58	8525.39	7541.67	3997.33	2589.53	2122.02	3056.59	5425.75	2208.93	7644.34	3516.79	2826.07	2855.49	3103.86	5321.54	2614.54	5692.26	3806.09	2282.93	3734.45	4679.78	1703.67	2834.13	3007.34
29	E3_Da	NovelBoundary	0	67.77	17.84	12.46	20.28	17.10	18.26	23.17	42.05	23.11	9.19	11.07	34.91	7.10	25.10	72.75	78.26	77.12	37.63	8.09	40.19	25.95	27.57	18.96	13.94	20.95	18.02	7.16	38.19	13.17
30	E3a_E4a	KnownJunction	0	4092.76	3048.22	3108.03	2333.57	2289.86	1458.97	4613.51	6122.80	3010.75	2141.96	2450.10	3689.03	4818.97	2320.82	7679.19	1947.96	4148.17	2108.82	3883.48	4139.09	1080.01	4383.39	4883.94	2620.52	3491.65	3912.65	6653.90	4696.28	2987.66
31	I3	Intron	0	50.09	30.67	24.82	44.84	13.85	43.52	29.28	18.65	26.70	22.62	18.16	29.89	10.15	29.80	60.89	74.29	66.50	38.12	42.29	42.80	33.94	14.48	11.31	41.90	28.29	16.71	10.26	11.37	11.77
32	I3_AR1	ActiveIntronRegion	0	50.24	30.77	24.89	44.99	13.89	43.66	29.37	18.71	26.78	22.69	18.22	29.99	10.18	29.90	61.09	74.52	66.70	38.24	42.42	42.94	34.05	14.53	11.34	42.03	28.38	16.77	10.29	11.41	11.81
33	E4_Aa	NovelBoundary	0	49.37	17.06	22.55	27.39	48.19	12.20	26.60	17.67	24.33	18.89	4.30	34.73	3.53	26.30	50.03	57.53	75.97	36.99	24.28	70.21	19.49	13.52	4.63	25.24	25.80	12.32	4.92	25.79	5.38
34	ER4a	ExonRegion	0	4679.97	2839.01	6791.91	7931.90	5495.97	1466.21	4465.91	6733.53	3366.64	1923.48	1693.84	2633.52	4530.06	2438.87	6862.40	1948.47	2982.27	2383.68	3124.91	5296.12	1122.01	4899.82	3078.59	2710.98	3692.07	2993.78	2389.94	3165.98	2176.97
35	E4_Da	NovelBoundary	0	44.59	11.34	3.96	9.71	7.37	20.60	19.45	2.09	12.12	12.38	6.01	11.66	12.32	18.08	42.65	28.69	36.89	37.76	8.09	30.27	10.79	12.01	4.48	11.54	14.02	15.32	2.53	4.04	4.06
36	E4a_E5a	KnownJunction	0	4808.91	2261.37	2207.91	7867.59	3073.28	1286.46	4371.04	6911.24	3606.70	1624.91	1619.09	2166.41	4047.23	2176.89	6696.74	1671.57	2113.69	1950.21	2605.10	4573.43	1111.66	5119.99	2624.17	2497.77	3524.31	2720.24	1230.26	2246.98	1743.90
37	I4	Intron	0	28.07	24.27	22.30	15.50	6.86	32.64	23.33	15.93	32.46	20.53	11.83	25.93	7.80	23.56	60.55	62.78	63.99	26.52	14.74	28.14	24.19	10.96	7.30	37.73	24.73	17.73	10.29	8.58	9.34
38	I4_AR1	ActiveIntronRegion	0	28.13	24.32	22.35	15.53	6.87	32.72	23.39	15.97	32.53	20.57	11.86	25.99	7.82	23.62	60.69	62.93	64.13	26.58	14.78	28.20	24.24	10.98	7.31	37.81	24.79	17.77	10.32	8.60	9.37
39	E5_Aa	NovelBoundary	0	22.12	14.45	8.94	7.98	0.00	23.86	10.13	11.00	25.95	15.14	4.46	17.83	5.41	16.95	115.41	50.80	53.95	32.62	0.00	18.86	30.16	11.23	21.47	27.16	17.50	17.55	11.03	6.29	11.92
40	ER5a	ExonRegion	0	2962.32	1865.74	1109.20	3255.65	1393.95	1148.71	3298.07	3815.27	2778.10	1235.73	1161.15	1451.94	2804.82	1404.10	4850.49	1280.41	1535.66	1587.50	2231.54	3095.37	986.59	3867.13	1890.55	1677.65	2494.04	2289.44	768.10	1551.51	1286.31
41	IG44_SR1	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	1.37	3.68	0.00	1.07	1.13	0.72	0.00	0.00	0.00	4.87	0.00	0.00	0.00	3.15	1.47	0.00	0.00	1.02	0.00	0.00	3.01	0.00	1.49	1.11
42	IG44_SR2	SilentIntergenicRegion	0	0.00	0.78	0.00	0.00	0.00	0.40	1.27	0.00	0.95	0.53	0.80	0.00	0.21	0.26	7.00	0.00	0.58	0.00	4.70	1.22	0.00	0.00	0.79	0.00	0.58	0.99	0.00	0.54	0.48