Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ZNF764	Gene	0	5.95	3.55	9.98	5.17	2.64	5.80	2.80	1.79	2.94	7.47	3.18	5.87	4.51	8.05	6.20	10.10	12.28	8.78	4.84	5.26	4.94	8.45	5.15	7.25	4.59	7.43	1.92	7.85	7.48
2	395091	Transcript	0	25.33	4.47	17.42	34.97	8.47	21.45	5.29	4.27	5.42	12.38	8.52	11.35	11.24	20.85	8.50	31.21	16.86	24.81	18.51	13.15	18.62	26.34	13.96	21.52	14.62	14.44	5.51	8.76	12.09
3	252797	Transcript	0	18.94	2.46	7.42	5.48	0.62	19.82	10.30	4.26	0.98	9.55	6.57	8.14	4.92	15.65	15.37	17.60	11.48	9.82	5.66	3.51	5.62	19.24	2.94	10.49	8.00	11.11	2.52	1.43	4.70
4	IG29_SR3	SilentIntergenicRegion	0	0.00	0.63	0.66	2.81	1.92	1.62	1.19	0.72	2.64	3.12	1.17	0.49	1.14	0.44	2.15	3.89	8.78	1.51	0.63	1.47	1.12	1.06	0.35	2.95	2.52	0.31	0.72	0.64	3.94
5	IG29_AR2	ActiveIntergenicRegion	0	2.14	0.00	2.95	0.00	4.98	5.35	0.00	5.52	1.12	4.17	0.00	0.00	3.90	0.91	0.00	10.12	4.01	3.54	2.35	0.00	4.23	5.41	2.41	0.00	0.00	11.00	0.00	6.52	2.68
6	IG29_AR1	ActiveIntergenicRegion	0	1.54	0.00	1.03	0.00	0.00	0.51	1.16	0.91	0.18	0.86	0.68	0.00	0.63	0.57	0.00	2.27	1.53	1.29	0.86	0.00	3.22	1.90	1.79	0.00	0.00	0.99	0.00	0.86	4.98
7	ER1a	ExonRegion	0	7.07	0.79	9.33	0.48	11.33	8.60	2.75	2.06	1.21	4.43	3.41	5.03	5.57	4.22	8.43	19.49	7.88	12.63	4.87	3.64	5.60	6.54	3.04	4.82	2.50	11.33	3.80	4.98	9.62
8	E1_Ab	KnownBoundary	0	5.84	3.49	16.05	0.00	0.00	13.89	7.78	0.00	2.92	9.23	4.56	10.60	3.47	10.66	0.00	21.27	13.06	13.87	8.09	15.55	13.56	4.62	9.95	0.00	6.97	21.50	4.32	5.53	20.04
9	ER1b	ExonRegion	0	15.33	10.20	19.48	7.79	3.48	12.96	4.66	2.55	1.84	12.72	5.45	10.50	8.27	15.39	10.71	21.60	21.32	21.01	4.30	12.86	10.06	20.14	5.95	9.50	8.15	13.26	3.60	19.31	15.88
10	E1_Da	NovelBoundary	0	2.95	4.85	13.58	8.41	7.22	0.00	8.30	0.00	1.55	1.92	4.65	1.48	3.25	5.98	8.17	5.81	17.60	4.62	8.09	3.39	9.51	5.88	16.79	0.00	0.00	9.96	1.94	12.13	17.96
11	E1a_E2a	KnownJunction	0	15.40	4.85	25.51	0.00	0.00	12.16	5.55	4.48	2.92	18.22	7.75	19.64	6.81	24.26	0.00	7.27	40.74	13.87	0.00	7.19	5.66	31.02	18.67	18.72	18.00	16.56	6.41	22.56	7.66
12	I1	Intron	0	2.34	1.17	2.44	0.00	0.00	3.51	0.00	1.34	0.61	0.53	0.00	0.00	0.00	2.31	3.68	6.07	2.72	2.81	3.49	1.00	1.56	2.63	1.98	2.35	0.52	1.15	0.00	0.59	1.47
13	I1_AR1	ActiveIntronRegion	0	2.36	1.19	2.47	0.00	0.00	3.56	0.00	1.36	0.62	0.53	0.00	0.00	0.00	2.35	3.73	6.16	2.76	2.85	3.54	1.02	1.57	2.66	2.00	2.37	0.53	1.16	0.00	0.60	1.49
14	E2_Aa	NovelBoundary	0	13.80	19.00	16.47	9.92	0.00	6.87	2.63	2.29	6.03	13.30	1.61	8.25	1.27	19.08	0.00	3.14	13.62	13.87	0.00	10.42	5.41	10.65	3.79	0.00	3.64	5.62	0.00	4.45	8.95
15	ER2a	ExonRegion	0	27.66	16.74	30.89	10.97	13.42	25.82	14.61	8.90	8.08	27.17	12.17	21.72	16.99	34.72	19.50	49.48	39.25	32.75	22.23	14.65	19.76	37.27	21.89	31.30	26.41	26.22	4.50	30.44	29.95
16	E2_Da	NovelBoundary	0	5.72	0.00	0.00	0.00	0.00	1.96	0.00	0.00	1.22	1.84	0.00	0.00	0.00	4.70	0.00	0.00	1.08	0.00	0.00	0.00	0.00	0.00	0.00	2.45	0.00	0.00	0.00	8.27	0.00
17	E2a_E3a	KnownJunction	0	10.56	0.00	4.19	0.00	0.00	17.30	10.01	2.54	0.00	7.19	2.72	7.32	3.03	10.90	16.74	13.69	7.68	4.62	0.00	0.00	1.60	10.99	0.00	0.00	4.93	10.04	0.00	0.00	1.68
18	E2a_E3b	KnownJunction	0	43.59	8.14	25.51	69.45	5.60	34.30	7.84	6.47	9.62	20.33	13.63	17.68	16.91	37.49	8.57	42.92	25.84	36.99	32.15	22.66	31.65	46.14	24.87	38.22	26.75	17.55	7.21	12.54	14.56
19	I2	Intron	0	3.21	1.25	2.38	0.00	0.00	1.96	1.72	0.00	1.64	1.23	1.19	1.27	0.00	2.19	0.99	1.41	4.68	1.51	2.73	1.57	1.22	0.64	0.64	1.07	0.31	0.90	0.26	1.16	1.24
20	I2_SR1	SilentIntronRegion	0	3.22	1.25	2.39	0.00	0.00	1.96	1.73	0.00	1.64	1.24	1.19	1.27	0.00	2.20	0.99	1.42	4.69	1.51	2.74	1.57	1.22	0.64	0.65	1.08	0.31	0.90	0.26	1.16	1.24
21	E3_Aa	NovelBoundary	0	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	4.26	0.00	1.33	0.00	0.00	0.00	0.00	3.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	1.67	0.00	0.00	0.00
22	E3_Ab	NovelBoundary	0	2.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.49	0.00	0.00	3.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.93	1.70	0.00	0.00	0.00	0.00
23	ER3a	ExonRegion	0	27.33	4.93	10.66	10.97	1.25	22.34	10.58	5.98	1.97	11.91	10.41	8.97	6.82	20.41	14.00	21.51	15.28	15.01	11.31	7.03	9.63	27.49	5.88	20.97	11.08	12.18	5.04	2.85	7.72
24	ER3b	ExonRegion	0	3.71	2.23	7.87	4.75	1.68	3.85	1.99	1.34	2.88	6.01	2.45	4.57	3.41	6.02	4.92	6.44	10.06	6.02	4.04	3.96	3.58	5.72	4.33	5.89	3.18	5.66	1.51	5.52	5.32
25	IG28	Intergenic	0	3.38	6.64	4.91	1.27	2.22	7.24	1.23	2.27	7.02	9.67	2.82	3.78	3.06	6.89	9.11	8.15	17.17	4.84	5.32	3.88	6.28	3.28	2.57	9.50	8.39	8.86	5.44	11.57	7.43
26	IG28_SR2	SilentIntergenicRegion	0	4.46	6.12	8.93	2.20	7.48	12.83	3.66	8.16	8.42	17.91	7.51	9.01	4.51	16.98	13.97	18.91	36.37	10.55	11.89	8.50	9.86	5.52	3.37	17.92	16.00	9.34	6.82	20.16	15.91
27	IG28_AR1	ActiveIntergenicRegion	0	6.95	11.58	11.11	4.25	5.43	15.40	2.45	3.04	8.26	19.02	5.45	8.16	6.87	14.29	14.33	14.89	36.01	9.43	8.88	8.33	13.34	4.45	4.86	17.39	16.05	18.52	8.03	21.89	12.41
28	IG28_SR1	SilentIntergenicRegion	0	2.47	5.52	3.21	0.52	1.13	4.98	0.78	1.70	6.65	6.95	1.90	2.41	2.07	4.50	7.58	5.87	11.52	3.39	4.05	2.54	4.40	2.86	1.98	7.10	6.10	6.57	4.75	8.60	5.71