Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	LITAF	Gene	0	590.84	885.91	797.64	165.74	121.98	794.87	366.51	548.08	348.81	568.78	545.07	361.22	517.48	268.84	58.00	285.52	414.18	351.40	130.29	80.35	401.61	978.36	186.88	323.99	261.56	275.79	260.96	59.31	398.96
2	413364	Transcript	0	22.30	18.45	18.91	5.00	4.36	20.43	17.07	16.74	6.57	22.47	9.39	11.06	14.57	10.86	2.87	14.41	12.28	14.73	6.95	1.53	11.21	28.51	6.14	10.63	5.33	14.28	8.54	2.38	14.44
3	405528	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	381810	Transcript	0	0.00	0.00	0.56	0.00	0.00	0.69	1.01	0.92	0.00	0.00	0.00	0.00	0.00	0.45	0.00	0.00	0.50	0.00	0.00	0.00	0.00	0.90	0.00	1.08	0.71	0.00	0.00	0.00	0.67
5	339430	Transcript	0	4.02	3.26	2.68	0.00	0.24	3.70	1.42	0.62	2.84	3.52	0.15	0.35	2.10	0.25	0.61	1.02	9.98	1.43	0.00	0.00	3.27	3.07	0.00	1.69	0.00	1.04	0.39	0.36	4.14
6	ER1a	ExonRegion	0	27.08	12.45	11.99	20.01	9.70	25.61	53.05	28.97	6.21	35.87	19.35	29.49	30.83	5.82	0.59	48.62	19.30	30.60	4.05	5.03	18.02	34.73	11.33	7.70	3.84	34.82	8.58	7.46	23.10
7	ER1b	ExonRegion	1	154.98	389.98	49.37	358.00	106.78	352.90	537.11	249.27	166.45	208.88	147.99	404.62	482.58	88.56	26.66	832.11	365.41	552.89	95.63	38.49	165.62	286.13	139.00	49.43	43.84	196.90	46.70	34.55	441.66
8	E1a_E3a	KnownJunction	1	119.15	1141.40	392.78	605.88	199.84	1020.16	654.88	208.02	472.68	97.75	111.99	779.68	1016.76	203.62	38.07	1652.60	936.18	918.15	80.92	67.98	298.74	601.01	243.93	22.91	19.02	126.34	53.42	23.36	1088.12
9	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.42	0.00	0.00	0.00	0.00	0.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	1.67	0.00	0.00	0.00	0.00	0.00	0.00
11	E2_Aa	NovelBoundary	0	5.13	0.00	2.39	0.00	6.19	10.09	0.00	0.00	1.28	0.00	0.00	0.00	0.00	1.13	0.00	5.97	0.00	0.00	0.00	0.00	3.53	2.04	0.00	0.00	0.00	0.00	0.00	0.00	3.07
12	ER2a	ExonRegion	0	5.62	1.87	4.11	0.00	0.48	2.33	0.26	1.24	1.66	3.52	0.29	0.70	1.03	0.51	1.23	2.03	3.26	2.86	0.00	0.00	1.08	4.34	0.00	3.38	0.01	2.09	0.79	0.73	3.83
13	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.40	0.00	0.00	0.00	0.00	1.39	1.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.69	0.00	2.25	0.00
14	E2a_E3a	KnownJunction	0	2.42	4.65	1.25	0.00	0.00	5.06	2.57	0.00	4.02	3.52	0.00	0.00	3.18	0.00	0.00	0.00	16.70	0.00	0.00	0.00	5.46	1.80	0.00	0.00	0.00	0.00	0.00	0.00	4.46
15	Ix	Intron	0	5.88	5.52	1.35	0.46	0.51	3.11	1.15	1.46	8.48	4.65	1.41	1.85	2.39	0.96	3.11	1.45	3.01	1.37	1.74	0.45	7.18	1.90	0.54	4.47	0.86	1.35	0.71	0.60	2.00
16	Ix_SR5	SilentIntronRegion	0	6.14	4.78	1.50	0.00	0.02	2.90	1.39	2.13	6.20	5.28	1.32	2.61	2.48	1.17	3.86	2.31	4.54	0.86	1.82	0.26	7.59	1.52	0.25	3.70	0.64	1.68	0.32	0.95	0.88
17	Ix_AR5	ActiveIntronRegion	0	9.01	15.48	2.95	0.00	5.02	10.41	3.59	2.50	7.30	6.92	4.68	5.25	4.73	0.96	1.29	1.77	6.42	3.44	5.29	0.00	13.88	3.39	0.67	5.34	1.83	2.24	0.00	0.00	8.01
18	Ix_SR4	SilentIntronRegion	0	6.18	6.19	1.36	0.47	0.71	3.98	1.36	1.09	8.47	5.16	1.85	1.32	2.29	1.08	2.17	1.31	2.73	1.60	2.38	0.48	9.30	1.56	0.41	4.31	0.74	1.14	0.77	0.56	2.21
19	Ix_AR4	ActiveIntronRegion	0	13.05	5.77	4.61	2.02	1.38	6.14	4.43	4.71	24.13	6.78	6.36	2.55	4.28	1.72	9.53	4.60	3.74	2.86	0.00	0.56	8.35	14.73	0.00	8.51	2.29	1.88	5.31	0.46	6.96
20	Ix_SR3	SilentIntronRegion	0	5.46	5.42	1.21	0.36	0.41	2.13	0.70	1.42	9.92	3.48	0.67	1.99	2.16	0.82	3.64	1.04	2.88	1.21	1.27	0.41	5.03	1.48	0.60	5.02	1.06	1.59	0.70	0.60	1.80
21	Ix_AR3	ActiveIntronRegion	0	3.77	3.68	1.29	2.77	0.00	2.66	0.39	1.07	7.85	5.67	1.21	1.65	4.44	1.39	4.62	1.44	1.78	1.49	0.79	2.13	5.61	3.13	3.54	7.02	0.84	0.61	0.00	0.94	4.91
22	Ix_SR2	SilentIntronRegion	0	4.28	2.41	0.21	0.89	0.00	1.37	0.50	0.92	2.44	5.04	0.30	0.84	1.70	0.00	1.73	1.24	0.93	1.60	0.80	0.34	4.62	2.25	0.68	1.61	0.53	0.20	0.69	0.00	0.42
23	Ix_SR1	SilentIntronRegion	0	2.73	4.05	0.71	0.00	0.00	2.34	0.86	0.78	3.58	5.52	3.03	2.10	3.03	0.39	0.00	1.05	0.63	0.00	0.00	0.00	6.06	1.53	0.00	2.74	0.00	1.34	0.00	0.00	0.57
24	Ix	Intron	0	3.10	4.08	0.76	0.85	0.07	2.70	0.89	1.09	2.80	2.96	0.95	0.87	1.17	0.76	1.85	0.71	1.98	1.00	1.74	0.19	4.33	1.09	0.45	2.09	0.44	1.04	0.43	0.22	0.87
25	Ix_SR5	SilentIntronRegion	0	1.23	1.56	0.79	0.00	0.00	1.92	2.07	0.00	4.35	2.27	1.79	0.00	3.09	0.00	3.22	3.54	1.00	0.00	0.00	0.00	1.85	1.17	0.00	0.05	0.00	1.41	0.00	0.00	0.34
26	Ix_AR7	ActiveIntronRegion	0	1.77	3.00	1.12	0.00	0.00	3.19	2.73	0.00	7.07	9.34	3.26	1.49	6.34	0.00	3.13	5.66	1.27	0.00	0.00	0.00	6.80	2.33	0.00	2.47	0.00	3.05	0.00	0.00	3.95
27	Ix_AR6	ActiveIntronRegion	0	3.53	6.90	0.97	0.00	0.00	3.84	2.31	0.67	2.79	5.88	1.31	0.26	2.08	0.66	1.00	1.71	2.15	0.00	1.17	0.00	3.32	1.52	0.66	2.04	0.52	0.57	0.00	0.00	1.29
28	Ix_SR4	SilentIntronRegion	0	1.76	4.64	0.43	0.00	0.00	1.67	0.57	1.15	1.98	2.56	0.20	0.54	0.54	0.87	1.73	0.53	1.86	0.97	0.94	0.00	3.97	0.62	0.25	2.13	0.49	0.22	0.81	0.00	0.96
29	Ix_AR3	ActiveIntronRegion	0	5.45	6.49	2.30	2.63	0.00	4.28	2.36	1.89	4.56	4.00	2.21	2.88	2.00	2.10	3.13	1.56	2.91	2.05	4.77	0.63	6.83	3.21	1.07	4.47	1.04	1.05	0.93	0.19	2.14
30	Ix_SR3	SilentIntronRegion	0	3.75	2.30	0.73	1.67	0.00	2.28	0.51	1.36	2.69	2.31	0.28	0.78	1.27	0.47	1.58	0.39	2.06	0.91	0.67	0.14	3.89	0.68	0.49	1.25	0.26	2.00	0.24	0.62	0.32
31	Ix_SR2	SilentIntronRegion	0	4.12	3.18	0.00	0.00	0.00	5.01	0.00	0.59	4.78	0.80	0.00	0.00	1.11	0.30	0.00	0.00	0.00	0.63	3.15	0.91	4.77	1.78	0.80	0.76	0.00	1.81	0.00	0.00	0.44
32	Ix_SR1	SilentIntronRegion	0	0.42	2.39	0.19	0.00	0.97	3.27	0.16	0.00	2.24	4.07	3.06	0.76	0.34	0.18	3.08	0.00	1.75	1.47	4.42	0.00	4.97	0.71	0.00	2.55	0.28	0.10	0.00	0.00	0.44
33	Ix_AR2	ActiveIntronRegion	0	0.00	2.46	1.12	0.00	0.00	3.69	2.02	0.00	2.25	1.71	0.00	1.24	1.30	0.00	0.00	0.00	2.00	0.85	0.00	0.00	7.13	0.00	0.00	0.67	0.00	1.57	0.00	0.00	1.85
34	Ix_AR1	ActiveIntronRegion	0	5.33	6.68	0.14	0.00	0.00	2.89	0.23	0.00	1.73	0.80	3.95	0.28	0.45	0.38	1.91	0.00	2.25	0.80	2.65	0.82	2.78	0.00	0.00	2.57	0.59	0.88	0.00	0.00	0.21
35	E3_Aa	NovelBoundary	0	2.54	3.68	0.00	0.00	0.00	0.00	2.17	0.00	1.16	1.52	5.92	0.00	1.75	5.69	0.00	3.82	2.27	0.00	8.09	0.00	9.67	0.00	0.00	2.57	0.00	0.00	0.00	0.00	0.00
36	ER3a	ExonRegion	0	1081.97	1321.86	382.46	150.80	134.01	1799.72	759.79	1027.68	604.23	857.47	668.51	660.08	976.07	440.97	81.57	909.83	708.50	800.34	195.90	157.24	851.82	2200.51	287.46	392.71	410.97	647.62	220.18	109.63	1046.73
37	E3_Da	NovelBoundary	0	40.58	14.15	5.68	0.00	0.00	10.28	2.40	13.49	4.35	7.67	14.65	4.37	2.80	3.39	0.00	0.00	17.60	9.25	8.09	7.61	5.09	6.13	2.31	3.05	0.00	1.93	7.11	0.00	5.28
38	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E3a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.97
40	Ix	Intron	0	14.39	10.71	3.96	1.73	1.57	6.41	1.05	3.70	5.27	5.28	3.35	1.51	1.07	2.04	1.25	1.91	4.02	4.06	3.21	0.66	7.22	2.32	0.58	4.06	1.67	2.02	0.07	0.85	1.48
41	Ix_AR4	ActiveIntronRegion	0	26.68	15.03	10.90	3.24	4.41	9.49	1.36	9.43	9.36	9.28	6.08	2.11	1.38	2.79	2.28	2.80	5.70	6.79	2.88	1.24	7.64	3.39	1.22	8.22	2.75	1.56	0.00	1.90	3.92
42	Ix_SR3	SilentIntronRegion	0	16.67	12.87	2.52	0.00	0.00	15.12	0.00	7.16	10.77	13.84	7.70	4.74	2.53	4.94	5.13	1.55	8.40	5.00	8.05	0.00	9.83	2.70	1.81	7.83	1.83	3.36	0.00	2.35	1.19
43	Ix_AR3	ActiveIntronRegion	0	17.16	10.23	5.03	6.04	1.03	8.66	0.52	4.08	5.16	9.14	3.95	1.30	1.20	4.00	1.55	0.52	5.91	4.60	6.02	0.58	9.37	4.45	0.87	4.00	2.17	3.46	0.00	1.31	2.30
44	Ix_AR2	ActiveIntronRegion	0	7.99	11.59	2.73	0.00	0.00	5.43	2.11	0.04	2.87	9.17	1.40	0.87	0.38	0.80	0.00	0.00	2.92	5.43	4.21	0.00	6.14	5.26	0.00	3.37	2.02	1.53	0.00	0.00	1.72
45	Ix_SR2	SilentIntronRegion	0	10.39	9.70	1.71	0.00	1.25	4.79	1.20	1.88	4.48	1.72	2.53	1.31	1.05	1.23	0.86	1.90	3.05	3.11	1.90	0.70	6.91	0.61	0.31	2.93	1.21	1.87	0.16	0.42	0.28
46	Ix_SR1	SilentIntronRegion	0	7.11	1.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.68	0.00	1.17	0.00	0.00	0.00	0.13	0.00	0.00	2.86	0.00	0.83	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.14
47	Ix_AR1	ActiveIntronRegion	0	7.10	7.31	0.00	0.00	0.00	0.00	0.00	3.17	0.00	1.05	0.00	1.24	0.00	0.00	0.00	8.03	0.00	0.00	1.87	0.00	2.24	2.58	0.00	0.00	0.00	0.00	0.00	0.00	1.13
48	E4_Aa	NovelBoundary	0	20.41	0.00	5.28	0.00	0.00	5.56	2.92	9.01	9.17	5.95	1.23	0.00	1.50	3.77	0.00	3.44	9.05	9.25	8.09	0.00	5.86	6.66	0.00	5.44	1.93	0.00	0.00	3.82	4.82
49	ER4a	ExonRegion	0	1484.08	1473.12	2095.37	385.99	356.96	1010.33	607.46	1405.82	569.19	1006.99	891.26	801.07	940.19	655.32	99.24	458.74	888.34	769.52	210.55	202.65	477.83	2338.56	469.79	670.53	509.54	579.88	468.57	161.51	772.88
50	E4_Da	NovelBoundary	0	24.77	8.53	2.64	0.00	6.19	3.61	0.00	4.28	8.68	1.76	0.00	0.00	0.00	1.13	8.37	0.00	2.70	0.00	0.00	3.56	3.17	0.00	0.00	8.61	0.00	0.00	0.00	0.00	6.83
51	E4a_E5a	KnownJunction	0	16.93	12.41	20.55	0.00	0.00	20.03	10.87	11.74	5.66	14.42	3.23	4.31	9.74	16.11	8.77	0.00	8.44	4.62	16.18	0.00	9.63	15.12	4.83	8.79	9.05	0.00	11.68	0.00	9.05
52	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	E4a_E7a	KnownJunction	0	1548.43	1700.41	2549.77	463.74	399.82	947.26	646.01	1343.73	580.24	967.28	643.83	631.19	855.94	622.73	85.11	495.10	670.12	896.31	258.73	197.32	482.85	2372.82	336.33	654.20	539.75	391.76	168.23	83.44	411.15
54	Ix	Intron	0	21.82	14.44	4.65	8.36	0.27	12.62	2.92	2.56	7.08	5.87	4.70	2.02	1.19	2.27	1.54	1.30	6.73	4.43	4.45	1.99	9.45	1.60	0.40	5.75	1.59	1.58	0.00	0.18	3.80
55	Ix_AR2	ActiveIntronRegion	0	7.13	0.00	0.00	0.00	0.00	2.30	0.00	0.00	0.00	0.00	0.00	1.03	0.00	0.00	0.00	2.07	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	Ix_AR1	ActiveIntronRegion	0	24.27	15.78	5.51	9.89	0.32	14.30	3.32	3.03	8.09	6.75	5.57	2.31	1.41	2.68	1.82	1.38	7.87	4.74	5.05	1.99	11.00	1.90	0.48	6.66	1.88	1.86	0.00	0.21	4.50
57	Ix_SR1	SilentIntronRegion	0	10.48	13.86	0.00	0.00	0.00	4.76	1.41	0.00	3.14	2.02	0.00	0.00	0.00	0.00	0.00	0.00	1.04	4.04	2.23	3.85	1.99	0.00	0.00	1.50	0.00	0.00	0.00	0.00	0.00
58	E5_Aa	NovelBoundary	0	23.65	4.27	2.17	0.00	0.00	3.49	0.00	2.14	8.62	3.40	2.78	5.66	1.18	1.37	14.75	0.00	5.81	4.62	0.00	0.00	3.41	0.00	0.00	2.69	0.00	5.92	0.00	0.00	8.78
59	ER5a	ExonRegion	0	26.27	34.99	22.13	0.00	7.73	25.73	4.36	16.72	8.23	17.37	9.17	4.51	9.57	15.80	2.11	9.01	11.55	9.83	7.57	1.09	9.84	30.46	6.11	11.92	6.50	5.89	6.65	0.18	13.81
60	E5_Da	NovelBoundary	0	36.57	38.39	20.33	19.84	0.00	8.82	2.92	4.18	24.79	20.85	4.40	13.73	1.31	5.45	0.00	10.56	35.32	4.62	8.09	3.47	13.04	9.24	0.00	5.56	9.43	7.42	0.00	6.07	8.22
61	E5a_E7a	KnownJunction	0	18.93	13.96	20.98	0.00	0.00	10.36	0.00	9.51	6.18	22.21	5.82	5.93	8.12	5.69	0.00	0.00	9.84	13.87	0.00	0.00	7.34	33.74	2.31	14.12	1.93	16.39	7.26	1.89	11.82
62	Ix	Intron	0	16.41	14.73	5.08	4.63	0.00	11.03	0.93	2.55	4.19	5.19	0.99	2.22	1.43	2.59	0.51	1.41	4.96	5.74	1.77	0.18	9.08	1.16	0.17	4.76	1.32	0.58	0.00	1.05	3.64
63	Ix_SR1	SilentIntronRegion	0	16.44	14.75	5.09	4.64	0.00	11.05	0.93	2.55	4.20	5.20	0.99	2.22	1.43	2.59	0.51	1.41	4.97	5.75	1.77	0.18	9.09	1.17	0.17	4.77	1.32	0.58	0.00	1.05	3.64
64	ER6a	ExonRegion	0	0.00	0.00	1.12	0.00	0.00	1.37	2.02	1.84	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	1.00	0.00	0.00	0.00	0.00	1.80	0.00	2.15	1.43	0.00	0.00	0.00	1.34
65	Ix	Intron	0	0.00	0.00	0.00	6.90	0.00	0.00	0.00	0.00	0.00	1.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.07	0.00	0.00	0.00	0.00	2.07	1.38	6.05	3.52	0.00	0.00
66	Ix_SR1	SilentIntronRegion	0	0.00	0.00	0.00	7.17	0.00	0.00	0.00	0.00	0.00	1.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.26	0.00	0.00	0.00	0.00	2.15	1.43	6.29	3.59	0.00	0.00
67	E7_Aa	NovelBoundary	0	44.36	3.78	8.97	10.57	6.93	7.33	0.00	2.39	2.83	0.00	0.00	2.86	0.00	3.59	0.00	10.79	8.08	0.00	8.09	0.00	0.00	2.38	2.02	5.56	1.93	0.00	0.00	0.00	4.75
68	ER7a	ExonRegion	0	1004.36	1655.27	1570.97	306.26	214.00	1423.62	630.17	920.61	618.96	1062.85	1061.74	621.61	911.02	472.60	104.10	416.84	726.30	567.72	245.12	134.61	734.03	1590.24	327.09	602.08	479.70	453.33	521.81	98.61	630.45
69	E7_Da	KnownBoundary	0	109.54	355.91	134.39	69.67	19.75	129.26	82.27	95.85	376.58	205.80	178.32	57.80	228.29	63.66	44.85	119.41	118.49	5.01	0.00	3.64	71.60	133.50	59.94	186.92	117.71	43.86	122.50	13.52	140.54
70	ER7b	ExonRegion	0	17.65	38.10	14.99	2.08	4.77	12.68	13.20	15.66	37.84	12.63	13.02	5.78	15.82	3.73	8.50	4.91	10.87	5.41	1.86	1.76	8.73	41.95	3.21	22.11	8.64	5.87	7.65	1.27	16.72