Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PAQR4	Gene	0	39.84	46.42	60.31	72.40	70.00	59.97	71.99	130.81	88.82	88.80	56.07	117.12	109.09	126.29	21.67	72.01	50.62	77.44	103.49	20.46	83.19	78.25	165.10	95.30	50.27	97.72	87.79	234.37	74.72
2	318782	Transcript	0	33.06	21.00	28.21	40.90	36.41	32.76	37.71	72.81	28.11	54.07	28.62	78.97	55.51	79.68	8.49	40.51	33.00	54.55	41.55	7.87	44.53	48.50	103.85	57.92	27.57	73.88	31.89	127.17	35.13
3	293978	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.48	0.00	0.00	0.00	0.00	0.00	2.02	0.00
4	ER1a	ExonRegion	0	0.82	0.00	0.00	13.19	0.00	0.03	1.75	1.01	0.53	1.46	0.00	0.00	0.68	0.25	0.00	3.94	0.00	4.02	0.00	0.00	4.38	1.71	0.95	2.26	0.00	2.40	1.28	6.64	0.00
5	E1_Ab	KnownBoundary	0	2.71	0.00	0.00	19.20	0.00	0.00	5.55	4.68	4.02	1.88	0.00	4.13	0.00	1.00	0.00	10.63	0.00	4.62	0.00	0.00	14.92	6.03	0.00	0.00	0.00	3.69	4.87	6.16	0.00
6	ER1b	ExonRegion	0	17.39	10.72	11.00	24.19	22.04	16.69	23.81	27.89	10.31	23.89	10.55	29.63	22.00	38.31	3.56	31.47	12.56	28.61	25.24	8.35	22.35	23.76	47.35	17.86	10.25	29.39	10.49	77.10	16.30
7	E1_Da	NovelBoundary	0	5.90	0.00	0.00	0.00	0.00	5.03	10.53	2.54	7.52	4.07	1.58	6.54	0.00	12.83	0.00	10.17	4.75	4.62	0.00	0.00	0.00	0.00	4.58	5.50	1.93	6.39	1.84	14.69	0.00
8	E1a_E2a	KnownJunction	0	48.13	47.70	48.93	66.22	41.41	33.53	39.54	77.68	34.90	84.68	42.39	105.63	64.39	107.06	9.97	57.07	40.61	74.36	24.28	13.31	61.33	50.76	121.01	70.58	43.04	73.04	41.25	136.64	38.92
9	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.48	0.00	0.00	0.00	0.00	0.00	2.02	0.00
10	Ix	Intron	0	12.92	3.26	2.52	1.96	1.56	5.90	6.17	5.97	4.02	7.84	1.20	4.96	1.78	11.52	4.45	12.66	8.32	12.78	12.54	0.75	8.34	2.96	4.54	7.27	2.94	6.24	3.51	13.55	2.42
11	Ix_AR1	ActiveIntronRegion	0	10.06	1.82	1.87	2.74	2.69	2.46	4.66	5.28	2.70	3.97	1.06	3.06	2.05	9.73	4.09	9.94	5.55	12.81	8.92	0.35	4.18	3.14	5.03	4.94	1.92	3.89	1.40	10.74	2.82
12	Ix_SR1	SilentIntronRegion	0	12.80	2.77	2.59	1.75	2.00	5.40	6.20	2.75	1.35	8.25	0.46	3.62	1.14	8.46	2.49	13.74	5.67	13.61	10.13	1.34	8.86	2.78	5.72	4.16	2.07	5.64	0.60	11.36	0.88
13	Ix_AR2	ActiveIntronRegion	0	16.41	4.97	3.55	2.24	0.00	9.43	8.61	6.91	5.66	12.82	1.56	7.13	2.33	15.42	6.54	19.31	12.56	11.45	16.12	1.29	13.86	2.54	4.64	9.91	4.14	10.24	8.21	17.87	3.26
14	Ix_SR2	SilentIntronRegion	0	4.29	6.18	2.59	0.00	0.00	4.88	2.21	2.89	5.89	3.54	0.00	5.15	0.00	8.51	10.53	5.36	7.82	6.11	6.79	0.00	10.83	0.00	3.92	11.88	1.70	2.13	6.45	12.89	1.95
15	Ix_AR3	ActiveIntronRegion	0	15.96	3.26	1.86	0.00	1.82	8.70	6.00	11.65	7.51	8.06	2.22	7.35	1.20	13.15	1.72	5.54	10.56	16.85	20.18	0.00	5.84	4.70	1.35	11.21	4.79	5.85	2.05	15.17	1.74
16	E2_Aa	NovelBoundary	0	23.18	0.00	2.34	10.78	0.00	12.85	4.81	19.61	15.47	3.60	1.61	5.69	1.40	13.78	16.74	10.10	22.31	23.89	8.09	0.00	18.41	0.00	2.12	5.26	5.42	4.33	2.44	31.72	3.33
17	ER2a	ExonRegion	0	58.68	32.60	52.56	47.43	46.79	52.89	75.57	127.86	52.06	83.63	50.38	130.90	104.30	152.79	21.09	73.87	68.02	99.32	84.34	21.89	72.72	100.36	181.26	108.66	50.64	106.08	65.31	231.12	65.60
18	E2_Da	NovelBoundary	0	8.43	0.00	0.00	0.00	12.38	3.22	0.00	0.00	5.94	7.63	1.39	1.75	1.27	9.82	16.74	0.00	8.46	0.00	0.00	4.05	1.76	0.00	2.51	5.02	0.00	4.29	4.87	1.89	4.72
19	E2a_E3a	KnownJunction	0	55.86	18.61	38.09	77.65	89.60	70.86	67.11	151.19	51.62	99.14	46.76	156.56	106.30	134.93	8.17	65.87	55.37	93.11	88.79	4.13	82.19	88.14	211.63	107.49	42.32	184.96	51.59	254.94	69.23
20	Ix	Intron	0	5.63	1.21	1.25	2.69	1.83	5.67	2.27	2.07	1.26	1.08	0.89	0.93	1.70	3.39	1.73	5.58	2.24	5.78	1.20	2.81	2.67	1.35	0.68	4.84	0.00	0.59	0.00	4.28	0.75
21	Ix_AR1	ActiveIntronRegion	0	5.71	1.23	1.27	2.73	1.86	5.76	2.30	2.10	1.28	1.10	0.91	0.94	1.73	3.44	1.76	5.67	2.27	5.87	1.22	2.85	2.71	1.37	0.69	4.91	0.00	0.60	0.00	4.34	0.76
22	E3_Aa	NovelBoundary	0	0.00	0.00	2.49	0.00	0.00	4.87	0.00	2.54	1.49	5.47	1.27	0.00	0.00	0.91	23.92	7.65	5.47	13.87	0.00	0.00	7.78	4.96	1.87	9.03	1.93	0.00	5.07	2.20	0.00
23	ER3a	ExonRegion	0	45.47	59.46	76.87	90.61	88.47	74.89	87.51	164.08	117.53	110.45	71.20	143.94	137.44	152.25	27.46	85.68	60.98	91.24	130.92	24.45	103.97	93.62	201.79	118.35	63.03	119.14	114.51	286.65	94.50
24	ER3b	ExonRegion	0	1.84	6.10	1.44	0.00	4.27	6.48	4.61	6.31	1.44	1.44	3.57	1.77	1.86	3.37	3.20	1.81	1.00	1.95	10.34	0.00	2.04	1.55	4.39	0.61	1.84	2.92	0.00	6.52	1.92