Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AC009712.2	Gene	0	6.49	3.86	17.12	2.68	2.57	5.36	3.37	2.34	3.96	6.84	5.63	2.48	4.81	4.11	6.03	5.19	5.30	3.42	4.99	3.42	2.88	2.67	2.35	2.38	4.31	2.76	3.37	3.97	1.76
2	500399	Transcript	0	1.19	1.66	0.89	0.00	0.99	0.98	0.50	0.13	1.43	1.31	0.60	0.42	1.12	0.58	2.02	1.76	1.32	0.32	2.29	0.23	1.69	0.17	0.37	0.88	0.96	0.15	0.26	1.01	0.60
3	499648	Transcript	0	1.97	1.30	17.63	0.71	0.48	5.60	2.05	1.18	2.87	4.46	9.00	1.92	4.33	4.30	3.62	1.02	0.87	0.35	2.19	0.27	0.56	1.07	2.41	1.53	6.06	1.10	4.42	0.59	0.13
4	ER1a	ExonRegion	0	0.49	0.00	0.38	0.00	0.00	0.31	0.00	0.00	0.00	0.49	0.00	0.00	0.00	0.10	0.00	0.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.49	0.00	0.00	0.00	0.00	0.00
5	E1_Da	NovelBoundary	0	399.04	432.59	344.60	410.03	711.21	233.89	406.28	503.83	541.14	480.15	346.46	291.80	435.06	255.13	563.68	304.92	302.50	360.89	347.98	252.56	160.96	355.98	187.69	375.46	313.88	160.20	333.22	245.64	241.63
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	Ix	Intron	0	32.56	16.22	11.85	12.45	14.66	18.15	8.67	8.66	30.11	27.52	18.60	13.78	4.75	12.51	13.16	24.67	21.06	18.50	25.31	3.42	15.99	3.20	3.47	17.97	14.68	6.71	4.57	11.61	3.72
8	Ix_AR1	ActiveIntronRegion	0	34.57	20.49	13.46	16.96	15.95	18.36	8.23	9.35	38.59	32.16	18.62	16.73	5.91	15.27	16.61	26.25	22.45	18.26	28.45	3.91	15.89	2.72	3.55	26.68	19.20	7.26	1.96	13.66	5.38
9	Ix_SR1	SilentIntronRegion	0	29.98	10.48	9.72	6.34	12.98	17.95	9.32	7.76	18.67	21.33	18.66	9.82	3.20	8.81	8.52	22.64	19.26	18.93	21.14	2.77	16.21	3.86	3.37	6.19	8.58	5.99	8.16	8.88	1.48
10	Ix	Intron	0	26.74	13.28	10.17	7.83	7.62	12.22	6.29	8.90	25.79	19.14	7.05	17.50	2.02	9.95	12.47	20.01	34.22	17.23	13.95	2.15	8.68	4.50	3.38	9.06	7.36	2.70	0.29	10.17	5.33
11	Ix_AR1	ActiveIntronRegion	0	26.90	13.36	10.23	7.88	7.66	12.30	6.33	8.96	25.95	19.24	7.10	17.61	2.03	10.00	12.55	20.14	34.43	17.33	14.04	2.16	8.73	4.53	3.41	9.11	7.41	2.71	0.29	10.23	5.36
12	Ix	Intron	0	26.57	5.05	11.21	2.91	6.95	12.57	7.37	12.72	19.60	12.61	4.84	11.02	3.03	8.36	15.66	14.62	21.23	14.22	11.68	4.48	8.98	1.83	2.57	6.56	6.39	4.47	0.00	10.27	1.64
13	Ix_AR1	ActiveIntronRegion	0	26.78	5.09	11.30	2.94	7.00	12.68	7.42	12.82	19.75	12.72	4.88	11.11	3.05	8.43	15.79	14.74	21.40	14.34	11.78	4.52	9.06	1.85	2.59	6.60	6.44	4.51	0.00	10.35	1.65
14	Ix	Intron	0	74.06	60.50	32.50	36.51	20.27	60.67	36.56	28.51	55.09	74.68	39.00	34.54	10.97	34.09	32.96	76.43	103.30	54.36	44.36	13.30	35.95	6.03	7.18	34.23	32.00	15.43	7.51	25.19	11.23
15	Ix_AR1	ActiveIntronRegion	0	114.58	57.45	48.01	48.03	18.42	69.52	46.65	36.77	82.41	77.71	39.08	48.20	12.65	43.16	41.99	89.83	136.53	55.79	28.47	10.03	36.68	10.20	9.46	48.13	38.96	23.98	8.01	33.95	16.58
16	Ix_AR2	ActiveIntronRegion	0	64.48	61.27	28.83	33.80	20.73	58.61	34.19	26.57	48.63	74.02	39.01	31.31	10.58	31.95	30.84	73.30	95.47	54.06	48.18	14.09	35.80	5.04	6.64	30.95	30.37	13.41	7.40	23.13	9.96
17	Ix	Intron	0	2.28	1.24	0.74	0.14	1.96	1.65	0.20	0.15	1.50	2.58	1.12	1.10	0.46	0.61	1.53	0.75	1.02	1.15	1.09	0.17	2.49	0.40	0.25	0.86	1.49	0.50	0.88	1.34	0.70
18	Ix_SR1	SilentIntronRegion	0	3.46	1.32	0.79	0.28	1.73	1.62	0.24	0.22	1.52	2.33	1.54	0.75	0.64	0.80	2.35	1.14	1.17	1.16	1.38	0.33	2.58	0.71	0.21	1.19	1.91	0.80	0.36	1.35	0.97
19	Ix_SR2	SilentIntronRegion	0	1.06	1.15	0.69	0.00	2.20	1.69	0.17	0.08	1.47	2.85	0.68	1.47	0.27	0.41	0.68	0.35	0.86	1.13	0.78	0.00	2.40	0.07	0.30	0.53	1.06	0.19	1.43	1.34	0.41
20	Ix	Intron	0	2.17	3.08	0.62	0.44	1.50	2.66	0.31	0.11	1.36	2.57	1.13	1.38	0.87	0.74	1.47	0.74	1.93	1.68	2.55	0.31	3.07	0.89	0.33	0.73	0.92	0.82	0.17	1.65	0.47
21	Ix_SR1	SilentIntronRegion	0	2.18	3.09	0.62	0.44	1.50	2.66	0.31	0.11	1.36	2.57	1.13	1.38	0.88	0.74	1.47	0.74	1.93	1.68	2.55	0.32	3.07	0.89	0.33	0.73	0.92	0.82	0.17	1.65	0.47
22	Ix	Intron	0	5.17	3.21	1.70	2.18	1.98	5.11	1.38	1.14	6.12	7.13	3.16	2.42	1.99	2.55	3.93	5.78	6.50	4.20	6.28	1.59	5.16	0.75	0.87	2.67	2.90	1.63	1.72	3.81	0.81
23	Ix_SR1	SilentIntronRegion	0	6.57	3.62	0.95	0.00	2.52	3.92	1.30	2.11	3.68	5.27	1.39	3.68	1.42	3.46	0.00	11.00	5.91	2.59	8.25	1.26	4.35	0.72	0.00	0.69	2.40	0.00	2.36	2.16	0.43
24	Ix_SR2	SilentIntronRegion	0	8.33	3.85	3.26	0.00	0.20	3.54	0.56	0.80	2.92	5.43	2.60	3.23	2.49	3.19	1.91	9.66	7.65	5.46	4.42	1.33	5.50	0.66	0.98	0.89	4.01	0.65	0.00	4.22	1.85
25	Ix_AR1	ActiveIntronRegion	0	6.57	2.92	1.33	1.93	1.32	6.87	1.63	0.50	6.19	9.16	3.00	2.02	0.90	2.65	4.37	4.95	4.21	4.00	7.59	1.39	7.42	2.19	1.63	3.27	2.51	0.85	0.00	5.28	0.00
26	Ix_SR3	SilentIntronRegion	0	3.96	3.37	1.45	2.33	2.12	5.36	1.57	1.40	6.93	7.92	3.31	2.37	1.96	2.39	5.06	4.75	6.96	4.70	5.98	1.68	5.55	0.74	0.80	2.88	3.16	2.01	1.98	3.67	0.77
27	Ix_SR4	SilentIntronRegion	0	7.25	1.05	1.76	3.26	1.59	4.86	1.96	0.30	4.66	4.68	3.42	1.89	3.12	2.19	2.68	5.43	5.67	2.94	7.99	1.66	3.17	0.00	0.29	3.77	2.90	2.85	1.49	4.78	0.54
28	Ix_AR3	ActiveIntronRegion	0	5.88	3.43	2.28	3.56	3.47	4.27	0.48	0.87	6.55	5.14	3.42	2.27	2.10	2.74	1.64	7.29	5.94	2.19	6.66	1.63	2.59	0.21	1.28	2.60	1.10	0.90	3.25	2.88	1.26
29	E2_Aa	NovelBoundary	0	10.03	0.00	1.15	0.00	0.00	10.86	0.00	0.00	1.58	3.56	0.00	8.61	1.94	0.00	8.57	3.29	4.73	0.00	16.18	0.00	4.09	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
30	ER2a	ExonRegion	0	3.08	4.99	2.29	0.00	2.98	2.63	1.51	0.40	4.30	3.42	1.79	1.27	3.36	1.64	6.06	5.27	3.97	0.97	6.87	0.68	5.08	0.52	1.11	2.16	2.87	0.45	0.77	3.03	1.80
31	E2_Ab	KnownBoundary	0	5.25	4.27	0.00	0.00	7.37	3.64	5.21	0.00	0.00	0.00	0.00	2.86	4.62	4.34	0.00	0.00	5.54	0.00	0.00	0.00	1.76	0.00	2.51	0.00	0.00	0.00	0.00	5.98	1.55
32	ER2b	ExonRegion	0	12.47	5.27	21.10	5.37	4.76	7.18	5.97	4.79	4.81	10.33	6.54	3.97	7.92	6.29	7.59	8.88	10.11	7.39	6.56	8.05	4.12	4.72	2.81	2.92	4.71	5.97	3.51	7.79	3.28
33	E2_Da	KnownBoundary	0	2.54	0.00	32.29	0.00	0.00	7.21	2.92	0.00	4.39	3.75	6.11	0.00	1.72	4.19	0.00	0.00	0.97	4.62	0.00	0.00	1.52	4.47	9.16	5.62	7.69	0.00	7.40	4.22	0.00
34	ER2c	ExonRegion	0	2.74	3.07	31.45	2.14	0.00	7.20	2.01	0.88	4.15	7.02	8.36	2.26	2.21	4.30	6.78	2.33	1.74	1.04	3.75	0.01	0.82	2.69	3.49	2.69	6.65	0.56	6.24	0.79	0.39
35	E2_Db	NovelBoundary	0	2.71	0.00	10.91	8.41	0.00	1.61	0.00	1.89	0.00	1.80	1.61	1.54	3.82	2.48	8.37	0.00	0.00	0.00	8.09	0.00	0.00	2.48	6.85	0.00	0.00	0.00	0.00	0.00	1.29
36	E2b_E3a	KnownJunction	0	0.00	0.00	6.58	0.00	0.00	5.06	0.00	0.00	0.00	0.00	4.43	1.45	1.31	3.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.53	0.00	0.00	0.00	0.00
37	I2	Intron	0	2.63	0.75	15.59	2.24	0.70	1.98	0.87	0.44	1.63	2.22	2.12	0.75	0.72	2.10	1.94	0.95	0.57	0.51	2.53	0.00	0.17	0.22	0.56	0.67	1.75	0.19	3.00	1.80	0.26
38	I2_SR1	SilentIntronRegion	0	2.56	0.76	16.31	1.95	0.66	1.98	0.93	0.32	1.65	2.08	2.04	0.69	0.69	2.23	2.20	1.08	0.65	0.31	2.58	0.00	0.19	0.18	0.64	0.53	1.86	0.15	3.12	1.73	0.29
39	I2_AR1	ActiveIntronRegion	0	3.18	0.68	10.14	4.51	1.03	2.03	0.42	1.39	1.54	3.33	2.73	1.29	0.96	1.09	0.00	0.00	0.00	2.02	2.16	0.00	0.00	0.47	0.00	1.81	0.90	0.52	2.04	2.39	0.00
40	E3_Aa	NovelBoundary	0	2.18	0.00	14.63	0.00	0.00	1.92	2.17	4.38	4.93	1.56	4.52	1.30	1.59	0.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	3.95	1.55
41	ER3a	ExonRegion	0	3.16	0.84	14.85	0.00	1.44	4.53	4.14	2.65	4.47	6.35	14.23	2.06	9.47	4.92	4.08	0.73	0.88	0.00	2.83	0.81	0.84	0.53	3.73	1.90	6.01	2.74	7.02	0.96	0.00
42	IG14_AR5	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.71	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00