Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	WHAMM	Gene	0	26.09	47.29	36.46	25.92	26.89	57.42	15.10	19.70	35.47	66.76	39.64	30.91	25.96	39.16	37.63	52.59	64.14	53.03	42.44	15.34	37.34	25.51	26.27	55.82	34.85	39.31	34.24	52.04	28.63
2	234505	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	286760	Transcript	0	24.02	43.57	36.77	33.35	22.64	37.32	11.75	26.69	39.19	53.04	26.17	35.19	35.56	37.35	46.58	54.56	71.14	54.05	36.29	14.00	28.54	18.96	21.50	59.16	34.08	47.97	23.79	58.53	30.47
4	IG18_AR4	ActiveIntergenicRegion	0	1.91	0.88	0.88	1.97	0.00	0.47	0.97	0.51	1.50	2.68	1.31	0.62	0.13	0.56	3.25	2.21	1.53	0.93	0.00	0.38	0.98	0.87	0.99	2.81	2.16	3.67	2.39	0.73	2.49
5	ER1a	ExonRegion	0	5.59	2.71	4.04	4.11	3.42	5.49	1.92	2.06	1.91	4.96	1.13	2.64	2.11	4.61	7.54	7.84	8.94	8.67	3.11	2.40	3.40	3.89	3.91	5.96	2.32	6.44	2.96	6.78	4.01
6	E1_Da	NovelBoundary	0	2.42	0.00	4.14	0.00	0.00	0.00	2.80	1.99	1.46	5.59	0.00	1.69	0.00	2.15	0.00	3.29	20.42	0.00	0.00	0.00	0.00	0.00	7.54	0.00	0.00	2.19	0.00	0.00	1.65
7	E1a_E2a	KnownJunction	0	13.27	26.47	34.73	30.63	12.67	39.98	22.60	22.05	10.93	35.63	14.36	14.49	17.80	27.65	8.97	29.61	41.80	46.88	0.00	4.13	18.01	10.79	20.29	16.27	4.93	17.04	7.40	27.81	26.51
8	E2_Aa	NovelBoundary	0	5.25	4.27	0.00	0.00	7.37	0.00	2.63	0.00	0.00	1.88	2.91	0.00	1.21	0.00	0.00	0.00	0.00	0.00	0.00	8.27	2.05	0.00	0.00	0.00	0.00	4.38	0.00	2.29	0.00
9	ER2a	ExonRegion	0	40.91	40.14	32.55	26.81	27.57	52.04	17.42	17.85	24.11	66.11	58.61	42.43	23.44	46.69	14.58	54.82	64.46	60.86	53.61	11.78	35.46	35.97	34.07	52.73	33.37	37.65	34.06	56.48	26.52
10	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	0.00	2.32	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	2.06	0.00	0.00	0.00
11	E2a_E3a	KnownJunction	0	54.03	62.34	50.00	51.55	35.37	76.93	22.49	12.94	35.54	72.62	52.73	52.02	23.50	52.82	7.57	57.07	68.25	76.42	48.55	19.27	45.93	35.49	52.30	68.85	25.61	43.51	26.64	75.40	16.24
12	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.52	0.00	1.52	0.00	0.00	1.78	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.01	0.00	0.00	6.50	4.32	0.00	7.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER3a	ExonRegion	0	48.52	61.54	55.84	36.27	24.61	72.33	23.33	26.53	44.69	111.94	83.36	62.54	28.01	68.04	31.90	77.66	92.05	81.98	72.11	16.18	55.12	54.95	54.32	63.94	55.34	47.54	59.76	62.11	39.44
15	E3_Da	NovelBoundary	0	2.54	4.75	0.00	0.00	0.00	9.55	0.00	0.00	3.26	3.44	2.85	3.34	0.00	3.15	8.17	3.06	8.15	27.61	8.09	4.05	7.46	0.00	0.00	0.00	3.86	2.15	0.00	0.00	0.00
16	E3a_E4a	KnownJunction	0	16.28	17.16	35.60	61.90	55.71	64.15	17.39	11.45	13.52	50.77	47.83	30.60	6.78	36.94	0.00	30.83	55.58	9.25	0.00	8.10	21.82	8.56	46.69	26.80	19.85	45.88	22.91	36.12	9.38
17	E4_Aa	NovelBoundary	0	9.14	0.00	0.00	32.35	11.49	1.96	0.00	0.00	0.00	7.67	3.23	1.23	0.00	2.10	18.54	2.83	5.49	4.62	24.28	4.13	1.64	0.00	0.00	5.44	0.00	4.38	0.00	3.68	0.00
18	ER4a	ExonRegion	0	50.75	67.96	57.56	32.35	49.93	106.50	24.90	25.83	48.18	119.13	77.20	51.83	27.75	72.96	39.93	95.20	102.75	89.13	71.06	22.12	80.55	44.55	59.22	78.82	57.42	45.23	68.04	61.78	35.76
19	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	I4	Intron	0	0.19	1.67	0.00	0.00	1.77	2.24	0.18	0.33	2.89	1.17	0.32	0.28	0.00	0.90	1.41	0.90	2.02	0.87	0.87	0.75	1.42	0.00	0.00	1.17	0.52	0.00	0.00	0.44	0.18
21	I4_SR1	SilentIntronRegion	0	0.19	1.67	0.00	0.00	1.77	2.25	0.18	0.33	2.90	1.18	0.32	0.28	0.00	0.90	1.42	0.90	2.03	0.87	0.87	0.75	1.42	0.00	0.00	1.17	0.52	0.00	0.00	0.44	0.18
22	ER5a	ExonRegion	0	31.67	74.31	39.18	60.44	56.00	121.19	24.10	12.69	43.61	94.60	73.73	40.96	22.90	48.82	28.61	90.97	73.61	80.71	58.18	27.31	81.05	25.43	46.86	66.10	34.92	28.91	68.30	44.99	29.07
23	E5_Da	NovelBoundary	0	2.60	3.88	0.00	0.00	7.37	7.17	2.92	0.00	8.80	0.00	0.00	0.00	1.50	1.06	0.00	0.00	3.40	4.62	0.00	0.00	5.82	0.00	0.00	0.00	0.00	0.00	0.00	1.89	1.88
24	E5a_E6a	KnownJunction	0	21.06	83.09	23.49	10.57	31.98	77.89	7.78	6.52	16.29	38.39	45.24	26.29	11.24	27.72	17.14	86.60	38.90	32.36	56.65	14.89	56.52	27.52	27.33	44.02	29.32	6.31	77.03	19.23	20.44
25	I5_SR1	SilentIntronRegion	0	0.88	7.95	0.00	0.00	0.00	1.13	0.00	1.51	2.31	0.00	0.00	1.02	0.00	0.00	1.90	2.04	1.84	0.79	0.00	1.13	1.76	0.00	0.00	0.88	0.59	0.00	0.75	0.67	0.00
26	E6_Aa	NovelBoundary	0	0.00	4.65	0.00	0.00	0.00	1.80	0.00	0.00	0.00	3.36	1.30	0.00	0.00	2.24	0.00	0.00	1.19	4.62	8.09	0.00	1.56	0.00	0.00	0.00	3.79	0.00	0.00	0.00	0.00
27	ER6a	ExonRegion	0	47.37	87.98	62.19	45.51	63.28	147.27	31.20	30.37	43.55	139.34	98.14	44.74	28.64	74.39	52.31	111.65	114.29	101.56	85.22	33.19	80.27	43.76	48.01	87.08	70.58	52.37	86.71	82.05	48.59
28	E6_Da	NovelBoundary	0	2.42	15.22	1.02	0.00	0.00	0.00	4.69	2.04	2.50	1.64	0.00	0.00	0.00	0.91	0.00	2.83	0.00	0.00	0.00	0.00	11.75	1.99	0.00	2.45	0.00	5.49	0.00	0.00	0.00
29	E6a_E7a	KnownJunction	0	72.61	103.06	77.36	83.69	52.76	211.44	29.52	42.05	60.08	206.24	136.88	57.77	53.75	95.05	52.22	124.08	117.68	78.60	113.29	28.94	141.27	50.27	62.65	142.84	87.14	57.42	61.48	99.70	69.00
30	E7_Aa	NovelBoundary	0	0.00	14.25	7.95	0.00	13.12	24.44	2.63	9.06	8.31	21.41	2.78	5.75	1.40	16.17	15.55	13.46	17.06	23.12	8.09	7.77	13.28	6.42	1.97	13.52	14.09	4.03	8.95	8.18	10.14
31	I6_AR1	ActiveIntronRegion	0	0.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.05	0.69	0.57	0.00	0.00	0.00	0.00	2.29	0.57	0.78	0.00	0.00	0.82	0.00	0.00	0.00	0.00	0.00	0.00	3.88	0.00
32	ER7a	ExonRegion	0	52.38	115.50	63.20	58.25	44.89	181.82	35.59	29.90	59.44	180.14	126.01	68.09	38.33	95.29	67.72	132.76	128.80	122.09	91.87	27.30	98.45	52.90	74.80	127.68	96.29	77.06	77.41	99.25	57.10
33	E7_Da	NovelBoundary	0	8.20	0.00	0.00	0.00	0.00	1.73	0.00	0.00	6.30	5.79	0.00	0.00	0.00	0.00	0.00	0.00	6.42	0.00	8.09	0.00	0.00	0.00	0.00	2.45	0.00	0.00	0.00	2.29	2.05
34	E7a_E8a	KnownJunction	0	42.76	135.73	51.27	99.65	33.75	191.07	26.15	35.23	65.26	219.18	113.28	46.17	38.15	77.26	47.84	104.80	148.43	51.63	113.29	7.69	88.40	46.43	75.60	127.05	79.37	91.32	114.25	138.43	60.05
35	I7	Intron	0	0.45	0.00	1.75	0.00	0.00	0.29	0.42	0.38	0.47	0.91	0.25	0.00	0.00	0.38	2.11	3.63	1.87	1.61	4.01	0.00	0.89	0.38	0.00	0.90	0.30	0.33	0.00	1.02	0.00
36	I7_SR1	SilentIntronRegion	0	0.45	0.00	1.75	0.00	0.00	0.29	0.42	0.39	0.47	0.91	0.25	0.00	0.00	0.38	2.12	3.65	1.88	1.62	4.02	0.00	0.90	0.38	0.00	0.90	0.29	0.33	0.00	1.03	0.00
37	E8_Aa	NovelBoundary	0	2.54	0.00	0.00	0.00	0.00	1.53	0.00	0.00	4.20	1.56	0.00	0.00	0.00	1.13	0.00	3.82	1.40	0.00	0.00	3.80	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	0.00
38	ER8a	ExonRegion	0	64.73	145.73	105.91	45.93	86.24	211.59	39.35	42.75	67.82	210.64	137.63	59.92	67.94	105.81	67.38	121.47	186.68	124.97	121.77	31.88	97.01	61.14	64.61	180.00	119.89	96.03	100.30	127.14	73.67
39	E8_Da	NovelBoundary	0	2.24	0.00	2.79	0.00	0.00	11.55	0.00	0.00	2.98	10.95	4.37	10.06	0.00	9.28	0.00	6.66	6.87	4.62	40.46	0.00	1.68	0.00	0.00	0.00	5.15	0.00	0.00	0.00	0.00
40	E8a_E9a	KnownJunction	0	72.61	142.52	110.72	40.77	84.00	164.02	40.68	34.29	54.84	111.97	121.92	69.49	50.22	84.84	15.95	119.11	154.89	97.09	185.90	34.82	85.39	45.46	63.38	155.70	111.72	78.88	81.21	121.36	76.56
41	I8	Intron	0	4.07	4.37	1.10	1.46	4.19	4.81	1.14	1.16	2.39	4.37	1.91	1.66	0.15	2.50	3.86	6.15	4.42	8.71	4.76	1.12	2.80	0.29	0.41	4.47	1.78	1.56	0.70	2.21	1.31
42	I8_SR1	SilentIntronRegion	0	2.56	5.37	1.59	0.00	12.72	9.97	2.22	0.00	2.94	6.51	1.76	4.01	0.80	3.28	1.57	6.22	7.61	8.93	10.63	0.00	5.71	0.21	0.21	8.93	1.06	0.69	0.00	2.42	1.27
43	I8_AR1	ActiveIntronRegion	0	3.09	4.44	0.86	1.84	4.88	5.49	1.17	0.24	3.99	7.18	1.73	2.26	0.17	3.49	5.37	4.40	3.06	6.03	6.77	0.00	4.47	0.38	0.38	5.22	1.41	1.33	0.00	1.53	0.94
44	I8_SR2	SilentIntronRegion	0	4.44	4.26	1.11	1.51	3.23	4.17	1.03	1.49	1.97	3.52	1.97	1.30	0.08	2.20	3.73	6.56	4.44	9.32	3.74	1.49	2.14	0.27	0.43	3.88	1.93	1.70	0.94	2.35	1.41
45	E9_Aa	NovelBoundary	0	5.84	8.92	1.17	0.00	7.37	9.05	0.00	0.00	4.63	10.15	0.00	2.68	0.00	7.62	26.51	3.52	4.75	9.25	8.09	0.00	3.69	2.48	7.54	16.27	10.57	0.00	0.00	0.00	1.49
46	ER9a	ExonRegion	0	38.45	68.38	53.15	32.43	28.95	82.78	21.56	34.33	41.85	98.58	58.22	43.82	41.71	55.82	45.03	69.97	104.93	78.64	54.44	24.43	53.48	38.12	35.41	77.46	49.79	61.50	40.05	78.46	38.72
47	E9_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	3.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	2.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E9a_E10a	KnownJunction	1	37.69	67.87	28.85	20.49	55.12	71.86	2.69	28.22	29.39	45.78	19.52	32.14	16.91	40.48	79.13	65.10	64.49	56.77	64.74	25.39	19.45	20.03	18.47	49.89	40.73	41.54	24.00	53.11	27.83
49	I9	Intron	0	1.23	1.57	0.72	1.54	0.35	2.98	0.86	0.35	1.57	2.37	0.57	0.59	0.63	1.58	3.04	1.36	2.84	3.09	1.29	0.39	1.50	0.30	0.17	1.79	0.71	0.94	0.00	1.51	0.46
50	I9_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	4.03	0.00	2.25	1.44	1.19	0.00	0.00	0.00	11.20	2.53	3.26	1.71	0.00	0.00	0.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	I9_AR2	ActiveIntronRegion	0	2.09	2.62	0.93	3.00	0.00	3.53	0.63	0.51	2.62	2.88	0.07	0.95	0.27	1.27	3.15	2.09	3.02	1.92	1.99	0.00	2.34	1.46	0.50	1.68	1.59	0.22	0.00	1.36	0.28
52	I9_SR2	SilentIntronRegion	0	2.01	2.97	1.12	2.89	0.66	3.39	0.27	0.00	2.64	4.24	0.27	0.75	0.43	2.37	4.19	2.31	2.94	3.23	1.08	0.74	2.16	0.05	0.00	2.01	0.77	0.03	0.00	1.32	0.50
53	I9_AR3	ActiveIntronRegion	0	1.43	0.92	0.48	1.36	0.00	3.03	0.58	1.05	1.76	2.09	1.39	0.53	0.99	2.15	3.32	0.49	2.50	2.99	0.61	0.52	0.80	0.17	0.00	1.11	0.54	2.82	0.00	2.48	0.09
54	E10_Aa	NovelBoundary	0	3.01	4.75	0.00	0.00	0.00	0.00	2.29	0.00	4.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.53	0.00	0.00	0.00	0.00	0.00	0.00	5.62	0.00	6.18	0.00	0.00	0.00
55	ER10a	ExonRegion	1	29.46	57.22	37.21	41.50	34.99	50.89	5.20	28.94	32.45	41.63	21.86	40.39	35.19	48.56	30.87	58.74	73.64	50.97	46.00	21.05	14.50	26.37	21.07	54.73	42.85	47.37	18.91	53.56	24.56
56	E10_Da	KnownBoundary	0	37.63	48.96	49.08	84.77	48.78	37.33	7.78	38.52	42.12	42.74	27.33	38.73	54.20	44.53	32.89	65.71	84.27	36.99	24.28	18.61	17.25	23.34	19.80	57.06	44.17	58.36	16.90	51.58	21.52
57	E10a_E10b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	ER10b	ExonRegion	1	24.74	36.51	33.59	40.91	18.54	29.39	8.06	32.37	26.48	42.95	24.00	40.82	37.84	39.19	37.08	60.45	84.20	60.15	27.67	12.31	22.50	13.19	22.71	55.85	35.37	53.67	15.65	59.24	30.28
59	E10_Ab	KnownBoundary	0	30.02	54.87	47.34	29.98	5.60	50.11	18.48	33.39	47.48	82.29	33.98	71.93	37.19	44.96	69.96	79.25	106.54	99.02	48.55	20.76	38.99	19.69	33.98	91.46	57.28	104.20	35.14	114.67	44.83
60	ER10c	ExonRegion	1	23.42	66.69	55.77	39.59	43.31	65.70	16.12	40.27	55.93	87.21	45.58	59.33	40.49	60.65	57.12	70.55	111.09	79.38	53.17	20.42	36.29	32.30	39.05	88.42	59.08	88.67	45.44	104.23	65.41
61	E10_Db	KnownBoundary	0	32.44	49.64	80.30	10.78	42.15	58.66	17.91	28.76	53.93	70.90	36.85	29.13	21.78	50.49	52.02	61.73	75.92	70.12	32.37	32.25	27.07	37.24	52.84	86.31	61.37	70.85	12.18	72.03	28.95
62	ER10d	ExonRegion	0	23.30	50.63	39.95	25.79	26.75	45.26	15.43	21.01	51.89	63.12	28.34	29.56	33.29	35.52	56.09	48.68	58.09	47.95	44.90	15.69	34.58	24.73	20.29	62.47	32.79	42.26	31.94	57.83	30.67
63	IG19_SR1	SilentIntergenicRegion	0	0.47	0.25	1.12	0.69	3.19	0.60	1.01	0.80	2.59	3.71	2.72	1.78	1.04	0.94	3.56	2.57	4.43	1.79	1.03	2.70	1.02	1.73	1.13	9.03	1.87	2.07	3.19	3.78	2.11
64	IG19_AR1	ActiveIntergenicRegion	0	2.86	2.63	2.00	0.10	4.15	6.01	2.75	0.67	7.66	3.20	0.87	1.75	1.11	1.59	7.52	2.68	10.37	2.70	2.33	1.34	3.02	2.22	0.28	12.38	2.76	2.65	4.45	7.86	3.97
65	IG19_AR2	ActiveIntergenicRegion	0	0.53	2.37	0.20	3.52	42.51	2.87	0.00	1.13	10.17	22.50	5.25	8.25	0.63	3.77	9.91	9.48	5.86	13.74	3.92	1.26	2.10	0.00	0.89	7.91	1.23	0.97	0.22	1.40	2.37