Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	POLR1D	Gene	0	377.34	178.03	232.07	260.81	236.52	229.30	426.18	595.64	334.58	201.23	258.61	340.30	367.09	166.48	329.05	203.24	154.37	150.70	317.14	367.37	280.40	236.50	173.34	191.13	206.92	253.71	257.71	274.04	283.67
2	302979	Transcript	0	37.93	12.82	18.93	36.55	23.93	32.17	46.42	38.51	17.39	27.76	16.45	29.10	17.14	18.31	55.58	39.08	31.70	24.63	44.07	43.26	15.58	26.83	14.87	26.69	11.85	25.76	33.20	29.84	17.47
3	381064	Transcript	0	0.00	4.85	1.32	8.41	0.00	3.84	0.00	0.00	1.49	0.00	3.04	5.96	0.00	2.97	9.37	0.00	11.03	14.26	8.09	11.66	8.78	6.81	0.00	0.00	1.63	3.82	0.00	0.00	16.47
4	399697	Transcript	0	0.00	0.00	1.12	0.00	0.00	1.37	2.02	1.84	8.99	1.44	0.00	1.24	3.90	1.81	0.00	0.00	1.00	2.73	0.00	11.24	4.28	1.80	0.00	6.45	0.00	1.57	0.00	1.63	0.00
5	465887	Transcript	0	14.10	0.00	0.00	0.00	0.00	3.34	0.00	4.28	4.93	0.00	0.00	1.54	0.00	2.26	8.37	19.05	2.43	0.00	0.00	2.98	0.00	1.85	2.51	5.26	1.59	0.00	0.00	0.00	7.40
6	489647	Transcript	0	63.30	42.11	28.74	46.52	24.16	57.61	205.18	251.89	109.07	64.69	85.69	58.03	74.92	24.63	58.85	29.33	35.54	53.06	68.48	121.83	82.28	39.48	41.03	44.57	63.13	57.99	7.82	103.20	83.78
7	399696	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	472179	Transcript	0	2.04	0.48	1.54	1.60	2.11	1.26	1.62	2.16	1.49	0.91	2.36	1.68	2.10	1.18	4.59	2.69	0.73	0.88	0.84	2.59	1.93	0.67	0.50	0.92	2.01	3.13	1.99	2.82	2.63
9	IG42_AR1	ActiveIntergenicRegion	0	2.13	0.00	2.21	18.80	7.67	2.73	2.67	1.17	0.00	2.58	1.18	1.64	0.86	0.81	1.53	6.08	0.00	6.75	4.97	0.91	3.31	0.00	4.16	0.71	0.47	1.56	2.40	7.35	2.22
10	ER1a	ExonRegion	0	16.37	4.84	11.67	43.84	23.70	4.62	13.80	13.59	4.62	10.10	3.40	23.26	7.96	4.76	24.31	10.62	20.78	15.88	6.44	10.15	4.44	11.44	8.39	4.18	2.83	14.36	3.67	12.35	15.75
11	E1_Ab	KnownBoundary	1	42.65	7.47	12.78	31.06	6.48	12.35	25.12	35.08	6.27	31.12	8.00	28.22	21.21	17.59	26.71	14.15	50.87	47.78	24.28	34.15	9.71	40.55	16.25	10.83	8.79	34.55	15.21	91.35	39.09
12	ER1b	ExonRegion	1	43.36	15.20	23.92	29.97	19.31	23.18	49.91	62.62	23.78	38.97	15.78	52.23	25.27	24.09	54.06	45.64	67.21	36.55	40.92	37.69	21.43	49.42	26.60	30.56	23.42	69.75	16.70	104.85	41.08
13	E1_Da	NovelBoundary	0	6.02	0.00	5.33	0.00	0.00	0.00	8.41	22.49	2.77	11.10	0.00	4.19	0.00	6.91	18.34	3.06	13.44	9.25	0.00	4.05	3.57	9.43	2.27	5.32	5.80	10.86	0.00	2.25	4.39
14	E1a_E2a	KnownJunction	0	38.46	3.68	25.16	18.33	19.90	38.14	48.06	42.20	13.89	35.11	16.67	34.82	19.71	24.37	50.63	61.81	51.39	28.51	24.05	41.10	18.89	43.51	13.05	40.14	7.65	30.60	22.07	20.13	14.23
15	E1a_E4b	KnownJunction	0	0.00	4.85	1.32	8.41	0.00	3.84	0.00	0.00	1.49	0.00	3.04	5.96	0.00	2.97	9.37	0.00	11.03	14.26	8.09	11.66	8.78	6.81	0.00	0.00	1.63	3.82	0.00	0.00	16.47
16	I1	Intron	0	10.60	3.96	3.48	3.73	2.54	4.65	4.72	11.98	7.30	5.26	3.10	6.74	2.53	7.29	7.89	10.43	6.99	11.70	13.30	2.67	4.45	6.10	0.47	8.96	5.21	2.04	6.67	5.51	6.44
17	I1_AR1	ActiveIntronRegion	0	11.00	5.87	5.53	4.35	3.02	1.98	4.15	5.94	8.60	1.58	4.12	6.08	2.88	4.97	4.60	13.56	6.93	8.93	12.93	3.48	3.07	7.68	1.10	8.30	4.39	0.00	0.44	7.43	10.61
18	I1_SR1	SilentIntronRegion	0	14.78	3.83	3.06	0.00	5.09	6.90	7.22	15.07	8.64	9.35	2.80	11.60	3.79	11.66	18.32	13.29	12.79	11.31	18.95	2.93	5.17	7.92	0.00	9.32	8.58	3.44	21.06	5.30	3.19
19	I1_AR2	ActiveIntronRegion	0	7.16	1.59	1.12	5.90	0.00	6.67	3.71	18.14	4.73	7.24	2.03	4.09	1.17	7.29	4.52	4.33	2.81	16.07	9.71	1.45	5.91	2.70	0.00	9.85	3.87	3.80	4.19	3.26	3.53
20	E2_Aa	NovelBoundary	0	19.17	3.68	5.61	9.92	7.37	3.61	7.90	14.08	20.52	13.94	1.61	0.00	1.43	10.59	15.35	17.75	14.47	18.49	16.18	8.27	15.44	14.29	0.00	8.25	8.68	4.12	4.47	3.59	3.27
21	ER2a	ExonRegion	0	49.02	17.04	24.68	45.05	22.24	18.78	53.93	58.35	18.83	31.67	11.41	32.34	20.34	29.15	42.83	53.92	44.12	38.67	37.94	41.20	22.58	33.74	18.15	30.19	20.48	43.42	14.88	70.02	28.93
22	E2_Ab	KnownBoundary	0	5.31	0.00	15.75	58.02	0.00	1.46	23.74	14.33	2.98	1.64	0.00	9.73	4.65	4.45	16.14	13.85	6.12	13.74	0.00	22.58	3.49	11.38	2.51	4.61	1.82	22.53	0.00	17.34	4.85
23	E2_Ac	KnownBoundary	0	6.02	0.00	7.70	10.78	7.37	1.96	2.92	5.03	0.00	2.04	3.23	4.82	6.46	2.26	0.00	7.65	1.08	0.00	0.00	12.40	6.14	2.48	12.56	3.05	5.64	8.75	12.42	13.75	0.00
24	E2_Ad	KnownBoundary	0	3.01	4.85	7.47	10.78	0.00	0.00	2.92	7.46	3.11	4.07	3.23	1.84	3.41	3.30	9.97	0.00	2.79	0.00	0.00	4.13	8.18	0.00	0.00	3.05	3.86	0.00	0.00	2.29	0.00
25	E2_Ae	KnownBoundary	0	816.54	114.40	587.54	1639.04	1567.74	166.02	608.71	687.62	145.32	146.56	136.95	388.85	425.25	114.64	361.77	437.34	127.27	162.46	48.55	310.87	214.91	236.33	502.74	129.80	136.73	344.09	113.06	566.95	482.66
26	ER2b	ExonRegion	0	181.48	26.28	172.30	476.14	318.82	45.67	164.17	137.88	30.46	40.43	33.19	102.11	100.75	38.20	110.15	111.63	47.86	97.95	77.94	116.17	60.23	69.91	124.57	34.18	43.36	107.22	27.07	135.47	106.78
27	ER2c	ExonRegion	0	549.90	70.18	455.05	1146.76	969.14	109.85	394.90	447.88	88.76	101.72	89.69	277.40	303.73	82.95	310.58	303.23	101.63	278.38	194.61	253.98	147.18	163.72	342.42	74.51	98.23	233.32	67.10	352.98	335.54
28	ER2d	ExonRegion	0	688.41	101.28	585.35	1572.22	1398.15	148.24	549.29	608.17	138.94	160.26	173.76	384.05	431.06	105.82	405.11	408.71	139.24	365.25	270.80	317.61	241.77	217.53	444.83	101.10	151.75	336.33	122.71	551.50	461.04
29	ER2e	ExonRegion	0	1467.29	355.25	1858.24	2499.93	2170.85	707.00	2407.58	2170.32	725.51	676.22	753.49	1185.99	1467.06	381.24	1114.86	792.51	597.50	494.14	847.61	1125.47	787.26	895.13	700.69	311.16	632.05	1443.56	1546.19	1388.54	1426.08
30	E2_Da	NovelBoundary	0	2.77	0.00	4.36	0.00	0.00	0.00	2.23	0.00	0.00	0.00	0.00	2.83	0.00	3.10	0.00	0.00	2.03	0.00	0.00	0.00	0.00	0.00	0.00	2.39	1.48	0.00	0.00	0.00	0.00
31	E2a_E3a	KnownJunction	0	582.36	128.94	565.57	699.71	450.22	424.12	1649.62	1138.99	479.63	300.95	302.81	544.42	781.97	153.88	531.59	184.13	178.52	162.46	283.24	542.92	251.41	341.34	162.28	181.00	223.30	731.77	872.84	517.25	548.26
32	E2a_E4b	KnownJunction	0	283.60	164.04	737.56	594.45	344.26	285.61	617.92	742.86	481.82	250.94	563.16	566.59	836.17	195.40	381.70	227.58	218.99	130.61	72.61	315.99	510.81	218.34	178.38	200.56	396.43	791.29	710.33	818.97	1061.75
33	E2a_E6a	NovelJunction	0	5.60	0.00	0.00	0.00	0.00	0.00	7.32	10.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.24	0.00	0.00	0.00	0.00	0.00	1.71	1.45
34	I2	Intron	0	10.36	6.35	2.76	6.76	2.59	7.05	4.64	6.73	4.20	5.02	3.09	5.05	1.68	7.10	11.33	6.63	7.39	13.25	13.37	6.80	6.56	2.13	0.75	8.62	2.36	2.97	1.08	3.75	2.33
35	I2_AR1	ActiveIntronRegion	0	10.35	6.35	2.90	7.47	2.82	7.33	4.40	6.77	3.81	5.12	2.91	5.03	1.82	7.67	12.57	6.21	7.92	13.20	11.89	5.95	6.38	2.14	0.75	9.10	2.25	3.30	0.64	4.19	2.37
36	I2_SR1	SilentIntronRegion	0	10.70	6.49	1.99	2.86	1.36	5.64	6.06	6.62	6.48	4.59	4.18	5.31	0.90	3.96	4.46	9.21	4.55	13.88	22.13	11.84	7.77	2.08	0.72	6.08	3.06	1.12	3.65	1.30	2.12
37	E3_Aa	NovelBoundary	0	33.15	21.91	7.47	31.92	36.25	26.67	18.65	20.06	16.38	11.02	4.14	11.29	5.99	9.84	17.34	10.56	15.26	13.87	40.46	11.91	21.90	1.94	0.00	17.47	3.86	6.27	0.00	2.07	1.55
38	ER3a	ExonRegion	0	1417.56	342.60	336.12	509.23	382.41	562.45	1566.47	1944.53	669.91	491.46	429.42	637.75	840.53	344.02	1043.94	302.51	316.03	269.41	1227.99	1305.87	324.36	729.59	268.00	426.00	328.09	558.15	678.71	475.32	451.72
39	E3_Db	NovelBoundary	0	0.00	0.00	1.49	0.00	0.00	1.88	0.00	0.00	5.66	0.00	0.00	0.00	1.34	0.00	0.00	3.82	2.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER3b	ExonRegion	1	47.87	25.73	14.21	39.00	29.89	67.13	69.88	39.89	32.21	34.17	34.31	25.97	20.57	14.97	104.54	29.95	10.52	15.47	107.87	80.57	16.40	18.63	19.89	32.27	16.44	14.67	92.19	16.84	10.96
41	I3_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.34	0.00	0.00	1.89	0.00	0.00	0.59	0.00	0.00	0.00	0.00	2.12	0.96	0.00	0.00	0.85	0.00	0.78	0.00	0.99	0.00	0.00	0.82	0.32
42	I3_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.18	0.00	0.53	2.71	0.00	0.00	0.53	0.00	0.00	0.00	0.00	2.43	0.00	0.00	0.00	1.73	0.51	0.52	0.61	0.81	0.00	0.00	0.00	0.38
43	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.20	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
44	ER4a	ExonRegion	0	2.04	0.48	1.54	1.60	2.11	1.26	1.62	2.16	1.49	0.91	2.36	1.68	2.10	1.18	4.59	2.69	0.73	0.88	0.84	2.59	1.93	0.67	0.50	0.92	2.01	3.13	1.99	2.82	2.63
45	E4_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	19.45	0.00	0.00	0.00	0.00	0.00	8.83	0.00	0.00	1.15	0.00	0.00	0.00	0.00	8.09	0.00	1.56	0.00	0.00	0.00	1.63	2.10	0.00	0.00	0.00
46	ER4b	ExonRegion	0	806.04	273.77	302.94	192.95	99.99	522.18	645.47	1719.36	500.62	336.54	370.85	511.40	725.22	284.70	390.04	474.11	270.09	259.19	241.94	683.11	848.86	567.53	289.94	336.75	612.02	600.97	251.81	514.02	737.73
47	E4a_E6a	KnownJunction	0	14.10	0.00	0.00	0.00	0.00	3.34	0.00	4.28	4.93	0.00	0.00	1.54	0.00	2.26	8.37	19.05	2.43	0.00	0.00	2.98	0.00	1.85	2.51	5.26	1.59	0.00	0.00	0.00	7.40
48	E4_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	0.00	0.00	2.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E4b_E5a	KnownJunction	0	92.78	54.68	12.38	41.63	24.61	91.43	315.31	365.43	164.90	87.80	86.68	61.87	107.44	32.68	94.28	43.68	37.52	85.02	97.11	194.51	136.09	61.31	59.05	54.43	89.26	90.12	7.31	137.49	128.16
50	E4b_E6a	KnownJunction	0	971.84	498.42	129.08	161.55	88.86	841.67	1315.60	2416.73	729.22	653.91	537.53	785.71	1173.05	430.66	1000.98	1134.94	409.31	487.01	549.61	882.48	1395.84	749.58	686.20	456.51	1000.85	1215.67	181.79	881.92	1081.82
51	ER4c	ExonRegion	0	1082.45	467.28	129.32	171.85	89.67	812.43	1550.11	2699.48	785.34	689.76	656.05	774.60	1208.41	441.96	845.69	1050.89	408.95	614.06	521.60	1074.38	1288.74	803.12	676.29	500.14	1045.91	1237.66	239.93	1023.26	1144.87
52	E5_Aa	NovelBoundary	0	0.00	17.45	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.40	0.00	0.00	2.22	0.00	3.14	0.86	0.00	0.00	0.00	6.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER5a	ExonRegion	0	33.81	29.54	45.10	51.41	23.71	23.79	95.06	138.35	53.23	41.58	84.71	54.20	42.40	16.58	23.42	14.98	33.55	21.10	39.86	49.15	28.47	17.65	23.01	34.72	36.99	25.87	8.33	68.91	39.40
54	E5_Da	NovelBoundary	0	24.36	22.59	30.05	109.14	27.71	33.92	103.39	106.90	62.21	33.47	38.97	45.66	21.81	12.01	26.31	25.93	22.04	32.88	40.46	66.74	24.15	8.22	13.49	20.94	26.75	15.88	15.16	62.50	13.17
55	I5	Intron	0	2.09	3.36	2.12	4.40	1.16	3.35	5.16	4.82	6.93	5.55	3.93	4.36	1.48	2.19	3.01	4.98	5.38	1.72	4.82	2.93	4.02	0.57	0.96	2.25	2.36	0.98	0.86	4.02	1.83
56	I5_SR1	SilentIntronRegion	0	2.16	3.79	2.37	4.41	1.56	2.77	8.19	5.73	9.80	6.22	6.16	3.48	1.86	1.50	1.71	3.65	3.34	2.03	7.14	4.29	4.43	0.74	1.15	2.94	2.73	1.34	1.02	5.21	2.23
57	I5_AR1	ActiveIntronRegion	0	1.96	1.46	1.82	2.26	0.30	1.05	2.83	4.46	1.09	4.15	1.30	5.84	0.72	2.24	0.56	4.00	4.94	1.25	3.44	1.51	2.51	0.55	0.33	0.39	1.66	0.90	1.12	6.05	1.40
58	I5_SR2	SilentIntronRegion	0	2.83	0.78	1.98	6.44	0.52	4.61	3.78	4.26	2.14	3.47	1.01	4.77	0.79	2.75	1.09	4.28	5.02	1.26	2.36	1.06	3.44	0.01	0.94	0.34	0.98	0.14	0.58	1.56	1.01
59	I5_AR2	ActiveIntronRegion	0	0.99	1.21	0.52	2.66	2.26	6.91	2.34	2.06	1.88	3.35	2.22	2.10	0.05	1.67	3.92	5.71	4.73	1.79	0.99	3.48	2.52	0.52	0.91	1.33	0.67	0.49	0.00	0.29	0.20
60	I5_AR3	ActiveIntronRegion	0	2.86	5.17	1.84	3.14	0.43	3.75	2.56	4.92	2.33	8.55	2.86	4.55	1.87	3.53	8.00	8.45	10.66	1.38	4.38	2.89	3.14	0.16	1.38	1.70	2.63	0.41	0.32	4.67	1.43
61	I5_SR4	SilentIntronRegion	0	1.52	5.80	2.29	2.37	0.32	5.45	2.22	5.61	5.29	5.91	3.29	5.42	0.94	2.62	4.48	5.11	9.76	1.53	2.18	0.73	3.89	0.71	0.91	2.99	3.15	1.33	0.24	2.94	0.86
62	I5_AR4	ActiveIntronRegion	0	1.56	3.56	2.09	6.96	1.66	3.33	1.74	2.53	10.85	4.95	2.12	5.85	1.92	3.26	7.33	9.06	7.59	1.69	3.11	2.28	5.32	0.61	0.58	3.03	2.62	0.78	1.34	1.90	2.95
63	E6_Aa	NovelBoundary	0	5.37	9.60	4.31	0.00	0.00	4.80	5.38	6.62	9.56	12.82	1.61	1.54	6.81	4.43	15.15	14.08	9.25	4.62	0.00	0.00	3.97	2.48	0.00	5.20	1.78	4.12	0.00	7.86	0.00
64	ER6a	ExonRegion	0	812.31	472.45	283.55	153.78	149.30	563.39	1145.06	2137.49	672.92	582.48	736.62	906.11	1333.69	427.74	754.11	777.68	456.89	456.98	579.04	800.67	948.76	611.10	706.21	469.99	972.62	1135.80	526.59	1149.92	1311.08
65	E6_Da	KnownBoundary	1	954.97	540.11	625.07	279.54	289.88	453.12	665.64	2195.82	631.62	318.37	684.26	986.52	1308.61	436.49	596.76	387.93	489.67	297.96	614.58	757.44	845.37	664.79	461.22	528.71	811.80	947.12	933.62	1205.02	1263.56
66	ER6b	ExonRegion	0	353.15	319.89	361.46	322.24	345.15	360.61	348.89	589.24	567.25	283.01	467.94	560.93	503.40	278.69	405.42	344.89	218.79	249.64	344.75	416.21	570.38	263.15	291.91	309.73	343.51	283.90	355.93	353.61	410.04
67	E6_Db	KnownBoundary	1	362.88	324.88	104.54	95.77	218.11	115.52	124.04	710.26	853.25	292.36	263.96	535.20	615.36	193.65	272.67	185.51	198.58	215.76	234.68	215.27	332.88	330.94	203.45	359.43	386.54	345.63	214.05	330.61	475.46
68	ER6c	ExonRegion	1	167.64	163.85	169.89	123.17	177.97	126.01	98.93	308.53	432.78	144.53	202.19	331.20	381.46	162.03	212.65	145.09	113.20	106.34	146.93	143.30	208.29	180.09	148.37	191.78	178.27	249.29	141.43	275.22	294.99
69	ER6d	ExonRegion	0	0.00	0.00	1.12	0.00	0.00	1.37	2.02	1.84	8.99	1.44	0.00	1.24	3.90	1.81	0.00	0.00	1.00	2.73	0.00	11.24	4.28	1.80	0.00	6.45	0.00	1.57	0.00	1.63	0.00