Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RFC3	Gene	0	112.71	160.94	83.22	834.34	235.25	236.94	235.76	219.54	176.74	118.41	174.69	292.31	392.74	268.54	101.37	149.97	67.46	163.97	962.17	325.30	372.23	100.25	310.07	271.43	131.76	142.35	233.30	427.43	104.64
2	380071	Transcript	0	105.25	113.47	57.11	760.12	214.63	155.80	205.21	187.59	148.64	82.01	133.65	220.02	318.57	221.31	63.49	133.42	44.88	128.88	798.15	296.77	276.45	92.71	232.97	234.65	124.74	100.20	150.03	290.10	88.05
3	399354	Transcript	0	0.00	0.14	0.14	0.00	0.00	0.00	0.00	0.15	0.00	0.00	0.00	0.21	0.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.07	0.00	0.00	0.00
4	434425	Transcript	1	4.64	10.04	3.73	22.22	0.27	11.11	0.76	24.15	7.27	5.35	1.87	21.77	21.01	12.02	6.19	15.06	5.19	2.57	18.55	10.19	7.74	8.51	70.91	8.38	7.62	42.93	11.11	41.56	3.65
5	IG11_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.91	0.00
6	IG11_AR2	ActiveIntergenicRegion	0	6.26	4.77	2.57	77.03	1.50	10.08	6.50	0.57	1.55	0.89	2.19	0.66	7.96	9.80	5.94	13.08	0.69	6.61	7.36	101.52	7.19	16.89	32.97	26.19	6.41	19.31	5.06	184.20	7.30
7	IG11_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34	0.00	0.00	0.00	0.00	0.00	8.74	0.00	0.24	0.00	0.91	0.00	0.00	0.00	6.68	0.00
8	IG11_AR5	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.52	0.00
9	ER1a	ExonRegion	0	0.92	0.00	0.00	5.92	1.42	0.00	1.34	0.00	0.00	0.83	0.00	0.53	0.74	0.00	0.00	0.00	0.00	0.00	0.00	2.01	0.41	0.77	1.98	0.00	0.41	0.22	0.26	0.78	0.64
10	ER1b	ExonRegion	1	39.38	33.39	58.23	920.09	261.63	85.60	62.88	83.25	14.59	25.44	53.76	72.24	99.92	66.58	18.46	56.31	24.05	82.32	181.19	106.89	108.27	61.14	126.91	38.11	28.74	86.34	82.51	248.26	37.27
11	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	1.72	0.00	0.00	0.00	1.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.52	0.00	1.89	0.00
12	E1a_E2a	KnownJunction	1	66.54	8.92	62.54	540.31	83.41	92.96	50.18	122.27	10.11	28.28	95.60	66.14	103.91	101.96	32.69	26.32	14.07	46.23	97.11	190.95	89.77	66.07	57.13	100.13	29.85	121.19	112.17	167.01	31.10
13	I1_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	1.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.08	0.00
14	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	1.13	2.00	0.00	0.00	0.00	0.84	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
15	ER2a	ExonRegion	1	120.44	99.64	74.66	430.86	170.42	390.13	230.26	190.95	51.71	129.70	358.23	256.43	374.97	273.05	81.61	146.93	68.71	217.36	740.27	418.91	441.89	111.18	405.78	218.76	136.56	281.80	371.66	832.03	116.47
16	E2_Da	NovelBoundary	0	0.00	0.00	0.00	10.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.84	0.00
17	E2a_E3a	KnownJunction	1	93.14	116.63	229.24	1278.19	584.92	229.98	179.88	95.50	59.17	121.75	277.59	276.80	300.23	243.74	57.60	117.43	51.07	116.23	841.39	428.63	292.44	58.68	319.88	213.36	78.01	125.70	451.05	651.69	78.67
18	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	5.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.45	1.48	0.00	0.00	0.00	0.00
19	ER3a	ExonRegion	1	129.21	141.44	215.04	2037.54	559.03	227.39	187.49	170.92	58.97	152.93	289.55	315.48	339.84	343.69	60.95	162.04	61.59	203.24	1014.85	404.49	353.62	90.00	416.43	247.32	174.08	154.85	387.75	671.53	93.24
20	E3a_E4a	KnownJunction	1	169.47	137.48	176.62	2215.37	448.60	225.22	232.41	188.86	87.16	148.32	277.25	338.16	443.62	423.43	67.17	173.96	93.01	154.89	849.71	377.44	329.11	107.93	468.32	255.59	220.61	173.76	270.65	725.37	112.74
21	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.37	0.00	0.00	0.00	0.00	0.00	4.13	0.00	0.00	0.00	0.00	3.86	0.00	0.00	0.00	0.00
22	ER4a	ExonRegion	0	195.87	207.02	145.03	1703.03	326.85	333.58	250.14	280.05	96.85	192.63	261.03	368.44	493.40	431.48	104.07	177.56	91.52	244.85	1003.90	442.65	423.85	167.84	494.84	319.31	229.70	208.43	313.96	774.53	130.34
23	E4a_E5a	KnownJunction	1	224.44	243.83	145.95	1148.78	220.62	355.17	257.47	463.72	168.25	232.32	231.53	440.14	503.97	489.90	100.06	227.28	76.76	334.95	1432.14	496.53	548.23	194.52	472.70	344.12	247.09	226.50	408.51	915.75	131.66
24	ER5a	ExonRegion	1	244.23	233.61	163.20	929.99	217.57	264.79	289.06	528.54	121.19	209.73	274.40	511.31	558.88	521.73	88.84	232.41	121.09	273.92	1239.23	435.27	413.24	224.97	662.05	345.91	294.44	310.70	327.21	970.29	152.40
25	E5a_E6a	KnownJunction	1	231.28	225.02	136.86	1106.93	220.03	185.58	274.23	409.37	103.57	130.06	248.14	439.30	456.84	394.72	60.19	227.89	107.21	306.05	1432.37	416.56	336.73	185.91	483.29	273.00	235.76	259.76	252.26	909.91	117.79
26	I5_SR2	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.79	0.00	0.00	0.00	0.00	0.00	0.00	2.47	0.00	2.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER6a	ExonRegion	1	246.06	238.17	224.00	1215.61	285.26	245.57	296.27	672.64	133.69	193.58	255.27	468.36	562.52	494.92	79.55	229.63	105.85	273.10	1239.32	417.15	393.25	232.79	736.49	336.73	297.75	370.73	392.99	1037.30	151.20
29	E6_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
30	E6a_E7a	KnownJunction	0	234.59	149.30	238.63	1487.41	300.64	207.49	318.57	687.62	173.88	194.30	235.14	461.32	521.07	438.10	76.94	190.79	99.72	299.88	1197.46	478.75	336.89	226.75	738.01	338.02	263.98	309.45	311.26	890.77	132.78
31	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	ER7a	ExonRegion	1	204.76	203.20	251.49	1349.07	312.23	216.66	279.70	596.29	135.36	140.82	235.33	448.76	539.04	451.03	89.44	214.14	92.43	240.88	1065.49	410.56	330.75	230.93	693.82	308.81	262.12	293.05	353.19	948.12	124.52
33	E7_Da	NovelBoundary	0	10.26	8.14	6.25	19.20	0.00	8.86	18.31	11.45	4.26	3.12	1.61	13.83	0.00	23.00	0.00	18.05	6.15	36.99	32.37	28.86	16.61	0.00	13.69	8.13	0.00	6.48	19.83	43.27	0.00
34	E7a_E8a	KnownJunction	1	242.78	218.14	200.37	1133.25	295.18	205.69	242.19	531.75	153.66	136.65	217.61	388.82	536.04	439.74	115.80	219.63	90.28	212.17	1034.71	381.99	377.40	231.42	675.51	262.47	217.42	346.66	241.88	837.34	172.30
35	E7a_E11a	NovelJunction	0	0.00	0.00	3.09	10.78	0.00	3.61	0.00	0.00	13.09	0.00	0.00	10.42	0.00	2.55	0.00	0.00	0.00	0.00	8.09	21.58	0.00	0.00	21.57	5.32	5.80	3.26	4.27	12.09	1.42
36	I7	Intron	0	5.97	8.27	1.28	32.48	3.24	10.93	8.66	4.19	6.48	4.05	3.18	8.36	2.77	16.86	5.00	21.62	7.13	27.25	79.34	15.96	12.42	1.08	3.48	11.21	3.39	1.33	2.22	14.28	0.87
37	I7_SR1	SilentIntronRegion	0	7.12	13.38	2.24	49.98	3.97	12.51	14.05	7.58	7.45	5.18	4.53	9.95	2.71	19.77	6.41	23.84	8.46	46.74	98.31	17.46	13.72	2.14	8.28	15.75	3.95	2.17	3.80	23.88	1.05
38	I7_AR1	ActiveIntronRegion	0	8.27	10.08	1.10	39.65	5.03	17.59	13.44	4.15	12.32	4.93	5.34	14.34	5.77	27.35	10.31	28.54	8.57	43.13	124.50	25.02	15.58	1.85	4.93	14.35	3.65	1.73	1.94	17.42	1.62
39	I7_SR2	SilentIntronRegion	0	4.86	7.70	0.59	29.03	2.94	8.14	6.01	3.28	2.64	3.19	1.37	5.50	1.15	11.82	3.80	18.39	5.26	17.58	60.73	14.14	10.61	0.25	1.81	5.90	3.19	1.11	2.35	9.21	0.68
40	I7_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	5.00	0.00	3.98	0.00	6.98	1.74	1.33	0.00	0.00	0.00	2.86	0.00	8.39	0.00	10.13	63.48	3.11	5.14	0.00	0.00	3.06	0.00	0.00	0.00	1.33	0.00
41	I7_AR3	ActiveIntronRegion	0	6.97	4.46	2.19	8.72	1.71	9.25	4.89	3.97	6.15	4.46	3.42	9.56	3.04	19.68	2.24	22.21	9.25	17.37	64.47	11.74	8.88	1.65	2.00	12.69	3.96	0.51	0.87	16.16	0.46
42	I7_SR3	SilentIntronRegion	0	4.01	4.02	1.25	30.96	2.85	11.24	6.24	1.20	9.26	3.92	3.42	6.66	4.49	12.82	1.93	20.32	7.95	12.85	57.79	12.10	17.54	0.42	0.61	14.70	2.53	0.39	1.41	9.46	0.79
43	I7_AR4	ActiveIntronRegion	0	3.76	2.33	1.30	29.04	0.00	4.82	4.56	2.13	10.03	1.63	4.48	2.72	0.34	6.97	3.41	14.27	4.97	20.45	64.94	11.57	8.21	0.00	0.00	16.99	2.57	3.69	0.00	8.24	0.00
44	E8_Aa	NovelBoundary	0	3.01	4.85	0.00	47.67	0.00	16.00	5.15	2.19	3.99	1.48	1.30	10.87	0.00	16.62	0.00	14.61	7.63	18.49	16.18	6.62	15.64	0.00	2.22	15.73	0.00	0.00	0.00	2.25	3.53
45	ER8a	ExonRegion	0	240.99	192.82	170.23	1233.44	324.80	201.86	254.53	521.34	129.16	170.78	257.62	365.89	491.55	424.47	86.65	214.46	73.10	196.15	1144.26	421.48	336.00	197.92	606.77	330.11	253.09	298.47	324.34	754.94	127.76
46	E8_Da	NovelBoundary	0	5.60	4.46	3.09	9.06	7.07	11.01	5.55	2.24	14.56	1.88	3.20	14.28	0.00	20.07	0.00	11.17	9.16	9.25	24.28	4.13	15.68	2.09	2.46	20.04	4.96	5.54	0.00	12.04	4.75
47	E8a_E10a	KnownJunction	0	201.79	123.81	106.01	1341.39	352.22	147.95	282.35	377.67	143.46	102.62	204.42	301.11	440.85	362.97	34.88	215.11	52.22	197.14	1035.84	471.80	296.46	186.11	426.16	320.79	244.97	190.32	182.39	540.53	127.76
48	E8a_E11a	KnownJunction	1	6.02	7.95	2.32	8.20	0.00	10.67	0.00	21.25	4.87	6.91	1.61	15.03	15.22	12.47	0.00	15.30	5.00	0.00	16.18	7.03	7.38	8.65	75.89	7.60	3.64	53.60	5.52	19.72	3.24
49	I8	Intron	0	5.06	4.56	0.79	16.93	2.31	4.54	0.95	11.30	1.06	5.48	2.81	2.62	0.00	8.77	6.95	12.89	2.82	13.34	37.72	4.84	6.06	2.55	0.85	11.17	4.05	3.71	1.73	7.70	0.63
50	I8_AR1	ActiveIntronRegion	0	5.09	4.61	0.80	17.09	2.33	4.59	0.96	11.39	1.07	5.53	2.84	2.64	0.00	8.85	7.01	13.01	2.85	13.47	38.07	4.89	6.11	2.58	0.86	11.28	4.09	3.75	1.75	7.77	0.64
51	ER9a	ExonRegion	0	0.00	0.14	0.14	0.00	0.00	0.00	0.00	0.15	0.00	0.00	0.00	0.21	0.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.07	0.00	0.00	0.00
52	I9	Intron	0	7.12	14.00	0.64	30.24	0.00	8.09	10.05	5.18	4.44	2.40	0.61	9.14	2.31	15.73	8.81	24.38	7.44	14.49	59.62	15.20	15.68	1.84	2.77	13.47	4.93	3.42	3.28	9.79	1.28
53	I9_AR1	ActiveIntronRegion	0	6.78	12.46	0.48	22.92	0.00	7.89	12.86	3.97	5.42	1.69	0.68	9.03	2.78	20.81	12.21	18.95	7.44	14.80	41.52	12.38	14.26	1.03	2.07	11.36	4.26	3.69	3.67	11.94	0.77
54	I9_SR1	SilentIntronRegion	0	7.83	14.73	1.10	46.09	0.00	9.08	10.05	6.81	4.26	3.45	0.60	8.59	2.15	13.85	5.28	31.51	9.13	13.28	76.33	16.68	18.87	2.13	4.09	17.89	5.64	3.18	4.22	9.04	2.15
55	I9_AR2	ActiveIntronRegion	0	6.50	16.68	0.00	12.94	0.00	6.39	2.48	4.67	2.25	1.89	0.44	10.92	1.46	6.53	8.10	22.62	3.54	16.75	70.19	19.63	12.18	3.41	1.59	8.94	5.12	3.26	0.00	5.84	0.64
56	E10_Aa	NovelBoundary	0	19.76	4.75	2.82	20.06	0.00	9.02	7.84	13.34	3.05	12.30	4.75	2.65	5.45	22.09	16.74	38.86	14.32	13.87	48.33	15.88	21.58	0.00	4.38	30.86	3.14	4.12	5.96	8.76	3.10
57	ER10a	ExonRegion	0	113.04	216.61	65.31	933.06	290.24	319.47	331.95	185.11	302.45	142.57	196.53	358.42	514.11	300.97	155.58	185.14	82.41	189.50	1358.61	416.51	532.48	91.25	270.77	383.16	128.84	110.04	267.45	328.99	135.74
58	E10_Da	NovelBoundary	0	2.42	10.86	0.95	50.90	11.64	12.12	4.52	1.89	17.39	4.47	6.01	9.88	17.58	15.62	23.52	9.03	3.51	20.04	64.51	13.15	9.95	1.85	11.62	12.02	0.00	5.06	13.72	14.20	7.53
59	I10_AR2	ActiveIntronRegion	0	0.31	0.79	0.00	1.02	3.13	0.59	0.00	0.52	0.40	0.62	0.42	1.89	0.60	2.48	0.00	0.71	0.85	0.41	3.64	0.79	2.03	0.00	1.16	0.46	0.20	1.12	0.26	6.27	0.19
60	I10_AR3	ActiveIntronRegion	0	0.00	2.40	0.62	1.17	0.00	0.00	0.00	0.00	0.42	1.07	0.00	0.91	0.22	0.00	0.00	0.02	0.00	0.00	0.39	0.00	1.05	0.00	0.00	0.00	0.00	1.83	0.00	1.00	1.50
61	I10	Intron	0	0.14	2.46	0.77	3.17	0.08	0.45	0.13	0.81	0.92	0.50	0.02	3.13	0.78	1.06	0.95	1.88	1.03	0.80	1.36	1.07	0.61	0.00	1.57	1.06	0.77	1.16	0.66	7.13	0.56
62	I10_SR1	SilentIntronRegion	0	0.18	1.05	0.28	1.81	0.00	0.41	0.00	0.39	0.83	0.37	0.05	0.62	0.08	0.52	0.19	1.27	1.01	0.91	0.54	0.00	0.42	0.00	0.61	0.27	0.30	0.33	0.00	4.33	0.00
63	I10_AR1	ActiveIntronRegion	0	0.00	3.20	0.31	0.00	0.00	0.38	0.00	1.02	0.31	0.54	0.00	3.49	0.48	0.34	2.73	0.56	0.69	0.18	1.18	0.77	1.06	0.00	0.34	0.00	0.53	0.58	1.02	4.39	0.00
64	I10_SR2	SilentIntronRegion	0	0.00	3.01	1.48	3.18	0.00	0.61	0.22	1.15	0.46	0.58	0.00	4.36	1.73	1.44	0.82	2.94	1.61	1.21	1.42	2.40	0.55	0.00	3.29	1.57	0.88	1.71	0.61	10.26	1.19
65	I10_AR2	ActiveIntronRegion	0	0.50	4.27	1.17	10.90	0.57	0.32	0.47	1.03	2.88	0.64	0.00	7.04	1.12	2.69	1.07	2.98	0.28	0.45	3.74	1.61	0.67	0.00	2.17	3.49	2.16	3.01	2.14	11.75	1.49
66	E11_Aa	NovelBoundary	1	0.00	7.37	1.54	0.00	0.00	0.00	0.00	4.18	0.00	0.00	0.00	6.90	1.37	2.22	0.00	0.00	0.00	4.62	0.00	0.00	3.69	0.00	4.73	4.79	0.00	0.00	0.00	16.36	0.00
67	ER11a	ExonRegion	1	3.26	12.12	5.14	36.24	0.54	11.56	1.53	27.05	9.66	3.79	2.12	28.51	26.79	11.57	12.38	14.82	5.39	5.13	20.91	13.34	8.11	8.37	65.93	9.17	11.61	32.25	16.71	63.40	4.07