Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	USPL1	Gene	0	97.05	116.30	61.20	208.10	84.34	123.43	127.55	134.88	108.43	123.77	129.71	155.40	78.57	90.51	96.36	142.89	133.40	76.31	189.93	168.24	120.62	63.61	80.55	116.28	94.35	42.05	91.55	90.99	81.05
2	465952	Transcript	0	6.67	1.89	9.49	4.21	0.00	6.93	6.75	4.55	0.00	9.39	1.61	1.37	2.83	2.12	8.37	4.93	7.25	2.96	12.14	3.10	9.71	5.32	2.14	4.16	1.65	1.93	0.00	13.30	7.82
3	255304	Transcript	0	83.44	97.94	60.12	228.02	70.48	107.97	102.92	103.36	78.93	116.63	130.36	131.74	51.48	81.91	73.02	139.12	116.38	69.96	165.86	162.47	114.45	48.18	77.75	89.02	83.60	34.12	78.95	73.38	73.01
4	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER1b	ExonRegion	0	45.41	24.80	40.87	121.29	61.13	37.65	36.45	58.96	10.48	37.99	46.77	42.44	16.88	21.21	25.97	44.27	49.86	27.19	43.78	46.01	44.10	23.90	39.14	8.19	23.16	34.56	58.43	60.29	22.38
7	E1_Da	NovelBoundary	0	2.83	0.00	0.00	0.00	0.00	1.88	0.00	0.00	0.00	5.55	0.00	0.00	0.00	1.13	0.00	0.00	8.01	0.00	0.00	4.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.07	0.00
8	E1a_E2a	KnownJunction	0	0.00	4.56	1.17	0.00	0.00	3.07	0.00	0.00	0.00	3.60	0.00	12.23	0.00	0.93	9.77	10.71	5.51	0.00	8.09	22.82	1.64	2.29	2.22	3.05	1.48	0.00	0.00	0.00	10.76
9	E1a_E3a	KnownJunction	0	13.33	3.78	18.99	8.41	0.00	13.85	13.50	9.11	0.00	18.77	3.23	2.74	5.67	4.23	16.74	9.87	14.50	4.62	24.28	6.20	19.41	10.65	4.28	8.31	3.30	3.86	0.00	26.60	15.65
10	I1	Intron	0	4.68	10.28	3.22	5.33	1.49	11.89	3.26	1.65	6.11	9.62	5.33	10.02	1.25	6.03	3.65	26.02	19.99	11.38	12.70	14.68	6.08	2.01	2.25	2.96	5.90	2.99	2.08	6.02	2.57
11	I1_AR1	ActiveIntronRegion	0	7.78	5.27	6.94	14.76	4.73	9.66	5.77	4.64	3.58	11.85	11.23	15.24	2.59	6.15	7.34	17.41	27.68	11.48	19.41	24.11	4.74	3.35	4.41	3.92	12.90	6.75	3.99	15.18	5.25
12	I1_SR1	SilentIntronRegion	0	6.44	12.07	7.52	11.19	2.54	12.35	6.38	2.92	3.86	11.31	12.02	13.04	2.36	8.29	5.23	34.20	29.22	14.77	17.15	16.84	3.50	4.84	5.56	2.73	9.83	5.30	3.10	8.23	4.01
13	I1_AR2	ActiveIntronRegion	0	5.70	13.57	1.34	9.62	0.00	11.02	1.43	1.24	3.15	7.83	3.59	4.67	0.00	6.33	0.00	33.07	17.49	9.34	5.54	9.95	7.39	0.00	0.29	1.75	4.44	7.01	3.69	3.62	1.84
14	I1_SR2	SilentIntronRegion	0	1.55	3.76	0.00	0.00	0.00	1.76	0.54	0.00	1.51	6.15	0.38	1.68	0.00	1.22	1.39	15.11	1.04	5.40	0.00	5.16	2.03	0.95	0.00	0.00	0.83	0.83	0.00	2.97	0.00
15	I1_AR3	ActiveIntronRegion	0	3.31	12.56	1.60	1.53	0.52	14.32	1.54	0.57	2.90	9.90	1.06	5.82	0.34	5.70	0.30	25.03	12.31	12.12	8.71	11.03	8.94	0.96	0.77	1.93	3.17	1.11	0.78	1.43	1.28
16	I1_SR3	SilentIntronRegion	0	3.42	11.12	0.89	0.42	0.29	12.67	2.06	0.45	10.93	8.19	2.52	9.87	0.84	5.65	3.57	27.71	18.72	10.27	11.72	12.65	6.67	0.95	0.96	3.62	2.95	1.05	1.51	3.67	1.69
17	E2_Aa	NovelBoundary	0	4.84	12.22	0.00	0.00	0.00	13.16	5.32	0.00	1.28	3.04	0.00	8.07	0.00	11.77	0.00	16.75	7.59	18.49	8.09	10.34	17.57	4.23	0.00	2.81	1.63	0.00	0.00	8.58	0.00
18	ER2a	ExonRegion	0	16.49	30.08	2.08	4.38	0.95	37.34	15.33	7.31	16.21	21.58	7.92	65.85	6.93	21.79	16.50	47.55	31.14	27.91	15.45	83.53	42.43	10.00	29.32	12.86	12.95	17.27	20.97	11.23	29.16
19	E2_Da	NovelBoundary	0	8.91	23.66	4.61	0.00	6.63	10.97	0.00	0.00	8.07	9.11	0.00	6.48	1.37	5.76	0.00	34.96	12.94	9.25	16.18	14.22	17.05	2.19	0.00	5.68	5.34	1.97	16.25	4.58	0.00
20	E2a_E3a	KnownJunction	0	2.42	23.37	2.82	21.57	7.22	22.71	0.00	2.49	5.97	16.06	11.36	60.27	10.00	16.37	0.00	20.96	16.72	4.62	16.18	62.93	20.74	1.90	41.47	12.80	5.04	11.59	38.37	2.29	39.05
21	I2	Intron	0	4.91	14.68	0.67	1.43	1.95	12.32	1.41	0.55	15.86	5.32	1.07	10.08	0.00	4.99	7.61	27.10	15.02	15.64	12.73	12.48	8.10	0.18	1.26	6.64	2.56	0.94	4.38	1.46	1.59
22	I2_AR1	ActiveIntronRegion	0	4.95	13.40	0.84	1.81	1.23	12.28	1.38	0.46	14.72	5.44	0.90	10.81	0.00	5.18	6.82	23.94	15.89	16.27	11.33	13.49	7.89	0.23	1.59	6.38	2.78	0.99	4.10	1.85	1.66
23	I2_SR1	SilentIntronRegion	0	4.88	20.09	0.00	0.00	4.79	12.83	1.53	0.90	20.76	5.03	1.75	7.49	0.00	4.40	10.93	40.18	12.05	13.59	18.49	8.92	9.13	0.00	0.00	7.84	1.79	0.77	5.58	0.00	1.37
24	E3_Aa	NovelBoundary	0	5.49	68.54	0.00	0.00	0.00	12.70	2.92	0.00	20.71	9.03	0.00	11.36	1.66	8.93	15.75	29.83	26.63	19.26	16.18	0.00	6.06	2.14	0.00	0.00	1.74	0.00	2.39	0.00	3.99
25	ER3a	ExonRegion	0	121.08	99.59	28.92	61.34	26.95	91.63	91.05	142.89	41.88	101.52	90.67	100.30	44.96	78.94	46.37	133.81	93.32	64.76	152.16	171.71	94.78	62.54	59.59	40.45	61.06	27.42	52.96	54.20	39.25
26	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.71	0.00	1.58	0.00	1.66	0.00	0.00	0.00	0.00	4.62	8.09	0.00	5.50	0.00	0.00	0.00	3.41	0.00	0.00	0.00	0.00
27	E3a_E4a	KnownJunction	0	77.09	94.43	27.33	19.84	13.12	114.80	175.71	88.38	58.62	170.29	236.31	127.53	78.11	102.72	67.97	192.70	147.82	120.98	234.68	220.81	111.67	26.69	99.19	58.44	78.20	55.53	111.42	152.59	53.35
28	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	3.99	0.00	1.23	0.00	0.97	0.00	0.00	1.22	0.00	0.00	0.00	0.00	0.00	2.36	0.00	0.00	0.00	0.00	0.00	0.00
29	E4_Aa	NovelBoundary	0	0.00	0.00	1.52	0.00	0.00	1.53	0.00	0.00	1.22	0.00	0.00	1.54	3.18	0.00	0.00	0.00	2.72	0.00	0.00	8.27	3.33	0.00	0.00	0.00	1.63	0.00	0.00	2.29	0.00
30	ER4a	ExonRegion	0	161.11	80.05	73.30	184.76	80.20	117.12	119.37	140.33	62.52	110.86	134.40	164.24	72.03	102.98	55.72	128.57	136.96	85.50	174.89	174.31	106.75	69.26	90.84	70.78	84.13	45.64	97.46	91.52	64.89
31	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	2.89	0.00	0.00	7.37	0.00	3.49	9.25	0.00	0.00	3.29	2.19	1.92	0.00	0.00	8.33	0.00	1.98	2.81
32	E4a_E5a	KnownJunction	0	108.71	101.41	74.32	186.14	68.82	117.94	102.01	113.37	75.10	113.41	159.88	134.00	37.86	106.11	65.18	121.94	98.16	89.26	283.01	161.43	141.23	68.26	51.76	108.27	98.88	35.79	47.16	75.26	62.73
33	E4a_E6a	NovelJunction	0	2.71	0.00	2.72	0.00	7.22	3.26	11.04	0.00	3.08	5.91	0.00	4.13	1.97	0.00	0.00	0.00	4.05	13.87	0.00	0.00	3.89	0.00	4.48	2.99	1.89	2.19	2.44	0.00	1.78
34	I4_SR1	SilentIntronRegion	0	1.66	0.71	0.22	0.00	0.00	1.42	0.00	1.19	2.09	0.93	0.31	1.91	1.50	0.52	1.19	0.55	5.96	0.29	2.47	1.68	2.94	0.46	0.93	0.83	0.00	0.40	0.94	2.94	2.15
35	E5_Aa	NovelBoundary	0	0.00	0.00	1.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER5a	ExonRegion	0	96.38	89.99	71.64	222.84	87.88	124.90	119.69	107.51	64.57	125.29	172.11	127.02	54.87	92.73	72.22	132.86	104.34	84.53	168.81	178.70	124.50	53.20	81.32	82.25	79.11	39.40	75.00	89.77	67.84
37	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	6.45	0.00	1.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.27	0.00
38	E5a_E6a	KnownJunction	0	143.87	65.64	120.59	159.83	84.44	131.41	149.33	129.14	77.23	153.51	141.82	119.24	59.20	99.11	67.37	171.66	128.03	74.10	169.94	166.06	140.03	64.22	86.33	84.64	72.44	58.58	70.07	92.51	101.85
39	E5a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.34	0.00	0.00	2.47	1.45	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	2.51	0.00	1.86	0.00	0.00	0.00	0.00
40	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.57	0.00	5.76	0.00	0.00	0.95	0.00	0.00	1.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.16	2.94
41	ER6a	ExonRegion	0	116.42	116.39	89.23	280.86	74.84	152.45	120.08	137.39	88.98	146.32	204.87	142.22	53.56	97.56	78.24	180.67	121.98	100.22	214.32	199.56	154.85	68.50	79.61	112.34	116.00	42.24	108.86	89.16	88.63
42	E6_Da	NovelBoundary	0	2.60	0.00	0.00	0.00	0.00	5.41	0.00	3.93	3.96	3.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	16.18	0.00	0.00	0.00	0.00	2.81	0.00	0.00	7.60	0.00	0.00
43	E6a_E7a	KnownJunction	0	101.93	101.70	89.27	255.60	77.22	108.62	135.60	151.34	104.24	151.47	190.03	149.06	48.91	80.76	94.68	160.88	147.08	83.22	169.72	204.76	131.20	49.54	104.90	86.79	111.61	51.20	67.89	92.38	78.54
44	E6a_E8a	NovelJunction	0	2.83	0.00	0.00	0.00	0.00	0.00	4.46	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
45	E7_Aa	NovelBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	1.92	0.00	2.44	0.00	1.13	0.00	0.00	1.40	0.00	8.09	0.00	0.00	0.00	0.00	0.00	5.72	1.63	2.14	0.00	0.00
46	ER7a	ExonRegion	0	97.24	101.88	67.30	315.84	88.28	144.88	155.39	119.86	96.13	144.86	162.56	152.60	65.94	99.75	88.99	180.57	133.12	76.37	198.63	167.10	137.07	51.25	94.73	95.91	104.49	35.35	102.01	80.29	80.98
47	E7_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.40	0.00	1.37	1.11	0.00	6.58	0.00	4.62	8.09	4.13	0.00	0.00	0.00	3.05	2.88	0.00	0.00	0.00	0.00
48	E7a_E8a	KnownJunction	0	94.08	168.40	32.61	544.84	130.13	116.48	98.52	107.25	93.18	174.24	192.15	173.79	54.74	91.79	115.80	235.23	165.26	112.50	242.77	205.42	149.69	46.28	108.15	110.96	111.12	21.76	135.97	85.37	91.15
49	E7a_E9a	NovelJunction	0	0.00	0.00	0.00	8.63	6.34	0.00	0.00	1.94	0.00	0.00	1.49	0.00	1.97	0.00	0.00	0.00	0.00	0.00	8.09	0.00	1.64	0.00	0.00	0.00	0.00	0.00	15.21	0.00	0.00
50	I7	Intron	0	1.22	1.65	0.68	0.87	0.79	1.45	0.33	0.42	3.71	2.05	1.38	1.73	1.14	1.34	3.08	1.60	2.00	1.17	4.84	1.56	2.68	0.24	0.42	0.67	0.93	0.62	0.99	2.71	0.43
51	I7_SR1	SilentIntronRegion	0	0.75	0.84	0.61	0.62	0.63	1.15	0.33	0.43	4.50	2.40	1.43	1.71	0.97	1.12	3.12	1.38	1.57	1.14	4.25	0.97	2.12	0.23	0.23	0.92	0.80	0.71	0.66	2.70	0.29
52	I7_AR1	ActiveIntronRegion	0	1.64	2.54	0.90	2.91	1.98	0.93	0.89	0.50	3.16	1.25	0.72	1.67	0.17	1.54	5.65	2.03	2.36	1.30	3.81	3.55	2.52	0.98	1.47	0.00	1.88	0.76	0.80	3.21	0.54
53	I7_SR2	SilentIntronRegion	0	2.19	4.04	0.67	0.07	0.73	2.77	0.00	0.27	2.38	1.34	1.02	1.34	1.70	1.57	2.19	1.80	3.31	0.60	7.15	2.25	4.50	0.00	0.54	0.32	1.09	0.28	2.32	1.96	0.98
54	I7_AR2	ActiveIntronRegion	0	2.12	1.49	0.96	2.09	0.77	1.51	0.32	0.58	1.32	1.93	2.61	2.79	2.31	2.24	1.72	2.34	2.01	2.46	5.51	2.16	3.15	0.00	0.28	0.34	0.45	0.49	0.86	3.84	0.26
55	E8_Aa	NovelBoundary	0	3.01	9.21	1.54	0.00	0.00	3.15	0.00	0.00	2.89	5.59	1.52	1.87	0.00	3.83	17.94	0.00	3.76	0.00	8.09	3.56	3.49	0.00	2.51	0.00	0.00	0.00	0.00	4.09	0.00
56	ER8a	ExonRegion	0	95.57	133.95	73.67	308.15	104.80	138.90	140.18	135.79	128.03	143.97	144.42	187.23	80.15	111.49	88.37	177.57	180.12	80.46	241.59	210.75	144.42	59.52	99.41	109.61	125.11	32.25	108.73	87.89	77.49
57	E8_Da	NovelBoundary	0	4.78	0.00	0.00	0.00	0.00	9.67	2.63	0.00	8.25	1.88	0.00	1.39	2.99	2.42	27.11	0.00	3.74	9.25	16.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	E8a_E9a	KnownJunction	0	119.33	182.27	90.94	422.33	90.34	158.30	144.64	171.14	121.78	172.21	160.58	203.94	93.53	143.22	116.80	199.97	222.86	90.67	193.99	258.27	157.07	75.79	142.09	171.31	132.41	50.17	147.30	139.15	116.34
59	I8	Intron	0	1.53	4.00	1.00	1.62	0.37	5.73	1.02	0.76	3.48	3.61	3.20	2.93	0.86	2.67	3.81	3.42	4.57	3.12	7.02	1.78	3.62	0.30	0.65	1.62	2.15	0.71	0.52	2.60	0.45
60	I8_AR1	ActiveIntronRegion	0	1.24	7.29	0.84	0.51	0.00	5.50	2.02	0.42	3.76	1.72	7.05	1.98	0.83	2.89	0.90	4.66	2.68	2.95	1.49	1.88	5.62	0.00	0.29	1.08	2.93	0.00	0.00	1.66	0.00
61	I8_SR1	SilentIntronRegion	0	1.37	3.03	0.31	1.27	0.45	4.06	0.56	0.55	3.55	2.94	2.32	1.33	0.56	2.12	1.57	2.34	2.99	2.86	5.50	0.97	2.53	0.17	0.56	1.19	1.74	0.65	0.00	1.68	0.15
62	I8_AR2	ActiveIntronRegion	0	1.91	4.16	1.21	2.39	0.00	8.56	1.68	0.82	2.43	3.88	4.04	3.47	0.85	3.23	5.57	4.12	6.38	2.36	6.87	1.29	4.50	0.10	0.60	1.32	2.75	0.79	0.00	3.14	1.15
63	I8_AR3	ActiveIntronRegion	0	0.84	5.09	1.96	1.62	0.55	5.14	0.68	1.00	4.71	4.90	2.83	5.41	1.57	2.76	6.48	3.85	5.90	5.25	10.11	4.12	4.54	1.22	1.17	2.49	1.51	0.57	2.64	4.21	0.00
64	I8_SR3	SilentIntronRegion	0	2.83	4.82	2.26	0.00	1.82	2.53	0.75	1.49	5.79	4.31	3.09	4.87	1.08	3.03	3.60	5.28	2.24	3.51	14.30	3.88	2.06	0.00	0.17	4.63	3.03	1.62	1.52	1.92	0.00
65	E9_Aa	NovelBoundary	1	2.89	4.56	5.66	10.78	6.93	3.64	2.92	4.88	7.40	6.83	11.04	1.27	1.62	2.79	19.33	10.63	8.62	0.00	0.00	3.80	3.73	0.00	4.83	5.50	0.00	0.00	2.53	19.50	0.00
66	ER9a	ExonRegion	0	92.26	153.56	65.95	241.83	101.25	146.59	157.19	161.05	154.65	149.74	146.93	185.11	103.51	103.28	135.42	168.03	158.63	85.57	233.67	190.72	142.97	75.58	89.50	166.50	116.14	47.96	104.04	108.62	104.60
67	IG33_AR1	ActiveIntergenicRegion	0	2.68	14.09	5.78	13.86	2.78	10.11	4.59	15.93	17.29	12.16	10.43	15.58	15.26	8.41	14.78	10.29	14.27	6.87	33.82	24.68	5.03	11.69	4.32	18.92	7.97	3.58	8.34	12.06	9.44