Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HOXC6	Gene	0	9.52	9.71	15.70	13.56	3.12	9.59	1.33	5.92	8.29	35.07	4.72	4.06	16.78	4.30	13.99	23.05	15.68	18.32	14.41	1.15	11.21	4.60	16.73	2.70	10.91	5.26	6.89	4.61	12.27
2	394331	Transcript	0	1.40	0.29	9.65	0.00	0.45	3.70	0.00	0.00	1.52	7.43	0.76	0.00	0.87	1.43	0.00	3.71	5.93	8.23	8.55	0.00	2.57	4.93	6.04	0.10	7.29	1.20	0.25	0.00	0.91
3	243108	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	441431	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	0.44	0.59	3.32	0.00	0.89	0.69	0.00	0.00	0.08	2.12	0.26	0.00	0.06	0.42	0.00	1.53	2.11	2.59	0.91	0.00	0.41	0.67	1.33	0.19	1.09	0.20	0.50	0.00	0.59
6	E1a_E2b	KnownJunction	0	2.36	0.00	15.97	0.00	0.00	6.71	0.00	0.00	2.95	12.74	1.27	0.00	1.69	2.44	0.00	5.89	9.75	13.87	16.18	0.00	4.73	9.19	10.74	0.00	13.49	2.19	0.00	0.00	1.22
7	Ix	Intron	0	0.12	1.39	0.67	0.45	0.12	1.89	0.05	0.29	0.29	3.37	0.23	0.04	0.43	0.43	0.64	5.10	1.61	0.99	0.84	0.19	0.54	0.10	0.20	0.06	0.56	0.12	0.00	0.24	0.23
8	Ix_AR1	ActiveIntronRegion	0	0.12	1.24	0.87	0.26	0.09	2.28	0.07	0.47	0.02	3.84	0.33	0.00	0.19	0.55	0.08	5.90	1.17	1.04	0.60	0.30	0.51	0.13	0.07	0.16	0.49	0.13	0.00	0.36	0.06
9	Ix_SR2	SilentIntronRegion	0	0.12	1.83	0.69	0.27	0.19	2.01	0.04	0.09	0.55	3.91	0.23	0.06	0.41	0.42	0.82	5.42	2.27	1.11	1.29	0.21	0.54	0.10	0.21	0.00	0.66	0.10	0.00	0.15	0.22
10	Ix_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	1.09	2.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00
11	E2_Aa	NovelBoundary	0	3.01	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.00	5.27	0.00	0.00	0.00	0.00	0.00	10.79	2.48	0.00	0.00	0.00	1.97	2.48	0.00	0.00	1.93	1.89	0.00	0.00	1.91
12	ER2a	ExonRegion	0	9.68	1.97	6.48	26.27	0.00	1.29	0.00	5.26	2.58	18.99	3.41	3.35	11.50	2.20	2.88	9.53	6.58	17.47	8.65	0.00	1.78	0.60	15.75	0.67	5.30	4.33	13.98	2.49	16.18
13	E2_Ab	KnownBoundary	0	8.85	0.00	2.49	0.00	0.00	0.00	0.00	2.49	0.00	7.99	1.52	0.00	7.39	2.35	15.75	11.09	8.19	9.25	8.09	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00	0.00
14	ER2b	ExonRegion	0	13.74	8.89	24.80	20.20	5.05	12.47	1.87	8.62	7.76	59.14	6.71	4.89	25.29	8.15	16.07	36.39	20.56	27.06	24.49	0.00	16.78	8.84	28.29	2.54	22.48	6.61	10.62	6.01	20.66
15	E2a_E3a	KnownJunction	0	19.88	0.00	25.64	20.49	0.00	7.56	2.57	1.99	7.19	45.06	0.00	7.41	12.04	6.51	0.00	41.08	18.32	51.37	16.18	0.00	24.11	18.23	30.98	2.87	20.27	13.09	3.98	0.00	13.50
16	Ix_SR1	SilentIntronRegion	0	0.99	0.00	0.00	0.00	0.00	0.42	0.00	0.00	0.00	2.23	0.00	0.00	0.00	0.14	0.71	1.92	1.15	1.19	0.49	0.00	0.22	0.05	0.28	0.00	0.00	0.40	0.00	0.00	0.00
17	Ix_AR4	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.84	0.00	0.00	0.00	1.44	0.00	0.00	0.00	0.00	0.00	0.00	0.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.36	0.00	0.00	0.00	0.00
18	Ix_AR5	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.31	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	1.02	1.23	0.79	0.00	0.00	0.00	0.00	0.00	0.00	0.47	0.00	0.00	0.00	0.00
19	E3_Aa	NovelBoundary	0	0.00	0.00	2.04	0.00	12.97	0.00	0.00	0.00	0.00	3.67	0.00	1.45	0.00	2.30	0.00	3.29	0.92	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.34	0.00	0.00
20	ER3a	ExonRegion	0	12.59	15.40	20.23	16.25	4.05	14.16	2.00	8.03	13.18	45.97	6.44	5.85	22.98	5.31	21.62	31.30	22.01	23.36	18.70	2.20	16.06	5.79	20.79	4.22	12.98	7.41	7.81	6.69	14.81