Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	COQ10A	Gene	0	41.97	15.48	23.74	29.27	48.21	26.62	37.67	18.12	26.48	26.08	27.78	35.84	19.30	117.88	108.15	57.98	77.99	21.59	62.80	59.62	12.42	26.03	22.00	66.55	34.05	24.27	58.54	123.59	21.09
2	308197	Transcript	0	18.30	0.00	7.14	2.24	8.77	4.50	2.75	3.62	6.21	6.55	2.72	8.53	3.72	26.37	14.98	13.80	21.22	14.55	23.82	9.95	6.90	7.95	9.53	12.04	7.08	8.29	2.61	36.80	3.07
3	433805	Transcript	0	0.00	0.00	4.49	0.00	14.94	0.00	4.03	0.00	0.00	0.00	0.40	0.00	0.00	4.54	0.00	7.59	0.33	1.82	0.00	2.81	0.00	0.00	0.00	0.00	1.43	1.57	0.00	4.35	0.00
4	257927	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	415200	Transcript	0	2.70	0.04	0.19	4.53	0.12	0.13	1.18	0.15	0.60	1.01	0.21	1.59	0.12	3.70	0.33	2.62	4.21	1.20	2.53	2.24	0.95	0.26	1.05	4.71	0.14	3.84	1.64	0.76	3.23
6	ER1a	ExonRegion	0	12.54	0.00	1.69	4.48	3.53	5.12	2.80	2.31	3.98	3.63	1.24	6.06	1.75	12.88	12.62	13.60	11.89	10.61	7.17	9.06	1.93	3.69	4.97	6.91	3.47	4.35	2.79	23.37	3.47
7	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	6.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.97	3.52	0.99	0.00	0.00	8.19	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00
8	E1a_E3b	KnownJunction	1	24.07	0.00	12.58	0.00	14.00	3.88	2.69	4.93	8.44	9.47	4.21	10.99	5.70	39.86	17.34	14.00	30.55	18.49	40.46	10.83	11.87	12.20	14.09	17.17	10.68	12.23	2.44	50.23	2.67
9	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E2_Ab	NovelBoundary	0	0.00	0.00	2.12	0.00	19.90	0.00	11.04	2.19	0.00	3.04	0.00	1.51	1.59	5.23	18.34	3.52	5.38	0.00	0.00	3.39	0.00	0.00	2.07	6.04	1.78	1.80	0.00	15.19	1.58
11	ER2a	ExonRegion	0	0.00	0.00	4.49	0.00	14.94	0.00	4.03	0.00	0.00	0.00	0.40	0.00	0.00	4.54	0.00	7.59	0.33	1.82	0.00	2.81	0.00	0.00	0.00	0.00	1.43	1.57	0.00	4.35	0.00
12	ER2b	ExonRegion	0	4.37	1.04	7.81	24.70	28.31	3.41	14.60	5.77	2.00	3.34	4.03	8.52	4.43	19.15	14.87	13.35	18.00	1.95	8.01	13.88	1.47	2.97	2.92	13.47	2.79	10.18	5.05	61.71	0.91
13	E2_Da	NovelBoundary	0	5.54	9.11	0.00	0.00	0.00	3.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.78	0.00	0.00	4.13	0.00	0.00	0.00	0.00	0.00	1.89	2.53	0.00	0.00
14	E2a_E3b	KnownJunction	0	6.02	0.00	2.89	7.98	6.78	6.52	4.92	10.50	1.19	1.84	4.46	8.49	4.49	28.52	26.31	15.07	12.56	0.00	16.18	20.26	0.00	13.47	2.31	22.61	4.43	5.54	0.00	15.28	1.68
15	I2	Intron	0	0.79	1.19	0.31	0.00	0.00	1.77	0.74	0.00	0.83	0.27	0.00	0.00	0.24	2.17	2.02	2.28	3.85	0.71	0.59	1.01	0.00	0.33	0.33	1.19	0.00	0.87	1.35	1.80	0.25
16	I2_AR1	ActiveIntronRegion	0	1.54	2.31	0.00	0.00	0.00	1.66	0.58	0.00	0.99	0.35	0.00	0.00	0.47	2.87	0.95	3.56	5.32	0.00	1.15	0.75	0.00	0.65	0.00	0.92	0.00	1.36	1.24	2.15	0.48
17	I2_SR1	SilentIntronRegion	0	0.00	0.00	0.31	0.00	0.00	2.37	1.05	0.00	0.58	0.45	0.00	0.00	0.00	0.99	3.63	2.34	3.12	3.39	0.00	0.62	0.00	0.00	1.51	1.87	0.00	0.87	0.20	0.51	0.00
18	I2_AR2	ActiveIntronRegion	0	0.00	0.00	0.87	0.00	0.00	1.62	0.84	0.00	0.73	0.00	0.00	0.00	0.00	1.76	2.91	0.00	1.80	0.17	0.00	1.78	0.00	0.00	0.14	1.23	0.00	0.00	2.36	2.10	0.00
19	E3_Aa	NovelBoundary	0	3.01	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.65	0.00	2.98	6.10	0.00	8.09	10.09	0.00	0.00	0.00	3.05	0.00	2.19	0.00	1.93	0.00
20	ER3a	ExonRegion	0	2.70	0.04	0.19	4.53	0.12	0.13	1.18	0.15	0.60	1.01	0.21	1.59	0.12	3.70	0.33	2.62	4.21	1.20	2.53	2.24	0.95	0.26	1.05	4.71	0.14	3.84	1.64	0.76	3.23
21	E3_Ab	KnownBoundary	0	2.48	0.00	0.00	7.98	0.00	0.00	2.40	0.00	1.40	3.67	0.00	1.87	0.00	5.34	0.00	3.82	7.05	4.62	0.00	4.05	0.00	0.00	2.07	5.50	0.00	3.18	7.50	0.00	5.08
22	ER3b	ExonRegion	0	41.52	5.67	20.07	15.58	58.58	19.66	42.76	22.82	10.83	22.50	22.20	33.29	16.58	110.67	85.97	77.07	92.22	23.89	42.93	62.30	9.18	22.72	15.75	59.75	26.35	26.83	42.08	141.53	12.12
23	E3_Da	NovelBoundary	0	18.99	4.56	2.52	0.00	0.00	1.53	15.73	6.72	4.72	13.22	0.00	4.64	0.00	42.63	15.75	15.07	60.87	4.50	16.18	6.37	8.18	6.90	0.00	8.73	6.48	0.00	0.00	25.66	3.73
24	E3a_E4a	KnownJunction	1	50.43	9.70	40.06	0.00	100.07	25.36	39.59	36.98	7.52	33.63	39.80	53.46	32.13	132.34	36.67	33.58	96.09	28.13	64.74	60.04	11.35	32.28	27.43	73.33	47.09	11.50	140.45	280.96	30.14
25	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.24	0.00	0.00	0.00	2.06	0.00	4.49	0.00
26	I3	Intron	0	12.01	5.82	1.62	8.31	7.08	7.04	8.18	4.27	5.74	7.25	1.49	5.78	0.13	21.64	32.25	27.50	39.36	6.42	14.50	10.66	3.03	2.09	0.52	15.38	6.63	2.88	2.65	13.38	2.39
27	I3_AR1	ActiveIntronRegion	0	12.89	2.00	1.73	7.43	9.11	8.26	9.61	5.34	5.46	7.48	1.23	8.31	0.27	24.77	31.83	31.69	53.85	5.26	12.58	13.73	2.66	2.24	1.12	16.95	7.41	3.58	3.04	15.21	1.80
28	I3_SR1	SilentIntronRegion	0	4.60	1.73	1.80	11.55	5.24	5.90	3.25	0.99	2.41	3.88	1.28	1.98	0.00	10.68	27.12	19.98	15.23	5.34	18.87	10.36	6.89	0.97	0.00	16.17	5.37	0.84	0.00	7.00	1.44
29	I3_AR2	ActiveIntronRegion	0	14.77	13.07	1.38	7.91	5.39	6.06	8.89	4.57	7.89	8.76	1.97	4.42	0.00	23.33	35.75	26.10	32.92	8.59	14.97	6.84	1.57	2.48	0.00	13.05	6.30	3.03	3.53	14.38	3.69
30	E4_Aa	NovelBoundary	0	19.52	0.00	4.36	0.00	6.63	3.91	13.96	0.00	2.92	8.91	8.57	8.67	0.00	36.23	51.23	19.74	62.06	13.87	16.18	19.19	0.00	0.00	0.00	11.42	8.60	7.38	0.00	25.61	3.37
31	ER4a	ExonRegion	0	63.57	19.23	51.84	53.99	89.62	37.14	47.59	35.67	37.02	40.10	49.15	67.80	36.55	210.88	135.95	84.50	122.26	38.12	79.12	93.71	19.05	49.65	33.75	108.58	66.76	42.27	83.63	207.72	32.98
32	E4_Da	NovelBoundary	1	14.45	0.00	2.22	9.27	20.63	3.49	0.00	1.94	10.05	1.52	1.61	10.90	0.00	34.03	76.94	29.68	74.78	4.62	56.65	15.46	7.94	2.48	0.00	23.69	13.49	0.00	0.00	35.23	1.88
33	E4a_E5a	KnownJunction	0	40.76	13.28	62.71	40.33	89.16	24.17	52.64	33.34	33.89	42.98	66.05	70.93	52.93	189.37	60.79	77.57	111.24	36.99	89.02	103.37	10.83	49.35	48.26	121.78	66.94	44.59	116.74	270.26	65.00
34	I4	Intron	0	6.83	5.53	4.92	5.27	8.38	9.44	2.97	3.61	7.83	7.79	2.92	7.09	0.95	31.48	45.72	28.42	46.85	11.10	21.93	15.65	6.99	0.88	0.44	23.74	7.01	0.39	2.25	16.79	2.63
35	I4_AR1	ActiveIntronRegion	0	6.90	5.58	4.97	5.32	8.46	9.53	2.99	3.65	7.91	7.86	2.95	7.16	0.96	31.78	46.16	28.70	47.30	11.21	22.15	15.80	7.06	0.89	0.45	23.97	7.08	0.39	2.27	16.93	2.65
36	E5_Aa	NovelBoundary	0	22.47	4.65	9.22	8.20	21.37	19.61	5.38	4.63	4.29	7.35	2.72	8.83	0.00	43.54	29.10	54.08	76.49	13.87	40.46	25.88	5.09	4.38	0.00	20.70	0.00	7.85	0.00	22.47	3.50
37	ER5a	ExonRegion	0	85.28	26.54	41.99	53.34	68.91	45.69	78.61	34.38	52.44	66.58	70.61	75.87	48.31	235.33	181.09	100.39	188.45	33.66	126.06	110.28	26.51	59.38	56.30	129.26	88.09	59.66	125.23	315.75	51.65
38	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.38	0.00	0.00	0.00	0.00	0.00	1.51	0.00	2.79	7.57	0.00	4.16	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	12.18	1.80	0.00
39	E5a_E6a	KnownJunction	0	132.42	32.09	52.60	58.45	120.40	55.48	121.47	51.71	85.15	93.63	67.63	73.19	56.97	273.66	282.83	121.33	224.85	50.73	186.13	114.95	37.42	66.65	52.01	148.10	112.14	59.69	111.42	344.80	55.13
40	I5	Intron	0	2.51	0.00	0.00	1.20	0.82	2.53	0.34	0.31	0.56	1.45	0.40	0.00	0.00	3.41	3.08	2.67	6.74	1.34	0.53	4.81	0.72	0.00	0.00	2.52	1.20	1.31	0.00	3.82	0.00
41	I5_SR1	SilentIntronRegion	0	2.92	0.00	0.00	0.00	0.00	0.93	0.00	0.00	1.53	0.98	0.00	0.00	0.00	3.39	3.14	1.69	0.00	2.84	0.00	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	I5_AR1	ActiveIntronRegion	0	2.57	0.00	0.00	1.99	1.35	3.26	0.56	0.51	0.16	2.00	0.49	0.00	0.00	3.84	2.74	3.38	10.27	1.07	0.89	5.38	1.19	0.00	0.00	3.93	1.83	2.18	0.00	3.79	0.00
43	I5_SR2	SilentIntronRegion	0	1.66	0.00	0.00	0.00	0.00	2.31	0.00	0.00	0.64	0.00	0.73	0.00	0.00	1.77	4.58	1.50	3.78	0.00	0.00	8.56	0.00	0.00	0.00	1.03	0.62	0.00	0.00	10.60	0.00
44	E6_Aa	NovelBoundary	0	2.71	0.00	0.00	0.00	0.00	3.61	0.00	0.00	1.13	7.31	0.00	1.81	0.00	3.04	0.00	9.79	13.87	0.00	8.09	0.00	1.52	9.72	0.00	0.00	0.00	8.07	0.00	2.29	0.00
45	ER6a	ExonRegion	0	56.80	26.75	31.53	38.37	64.30	40.45	54.25	22.91	41.64	36.03	38.47	46.77	25.33	163.44	171.17	78.48	101.95	26.82	97.94	83.66	17.97	34.63	30.01	95.13	45.03	29.52	90.01	149.32	30.18
46	IG18_AR2	ActiveIntergenicRegion	0	0.00	3.28	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.91	0.00	0.00	3.01	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	IG18_SR1	SilentIntergenicRegion	0	0.00	0.42	0.00	0.00	0.00	0.00	0.00	0.00	1.74	0.98	1.00	0.00	0.00	1.73	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	IG18_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	1.44	1.19	0.00	0.00	1.01	0.00	0.00	2.62	0.00	0.00	0.00	0.00	0.00	0.00	1.91	0.00	0.00	0.00	0.00	0.00
49	IG18_SR2	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.48	2.06	0.60	0.00	0.00	1.81	0.00	0.00	1.22	0.00	0.00	0.00	0.00	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00
50	IG18_AR4	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.44	0.00	0.00	0.00	2.72	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00