Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AC005841.1	Gene	0	5.39	7.49	3.64	10.21	2.04	5.64	10.13	5.86	7.94	8.34	1.00	4.13	1.09	9.47	16.40	8.73	18.88	12.80	23.54	14.87	5.38	2.56	1.36	5.04	5.15	5.27	0.61	23.75	3.14
2	499124	Transcript	0	5.76	11.37	3.73	6.99	1.51	7.52	12.88	8.16	8.32	7.21	0.74	4.03	0.91	9.73	19.43	7.57	20.17	16.10	32.50	12.54	7.27	2.08	1.55	6.05	7.49	4.08	0.50	29.13	3.13
3	IG23	Intergenic	0	1.22	1.16	0.69	0.74	0.76	0.99	0.21	1.14	1.56	2.76	0.80	0.51	0.54	0.63	2.56	3.01	1.93	0.50	0.83	1.24	1.77	0.19	0.19	2.33	1.03	0.32	1.14	5.14	0.97
4	IG23_SR1	SilentIntergenicRegion	0	0.88	0.00	0.67	0.00	0.00	0.03	0.50	0.00	0.90	1.96	1.18	1.01	0.86	0.34	2.29	1.20	0.00	0.48	0.00	0.71	1.54	0.00	0.26	0.85	1.69	0.39	0.07	4.37	0.00
5	IG23_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.57	4.11	0.00	0.00	0.00	0.00	3.17	0.58	2.19	0.11	1.73	0.53	0.00	10.39	2.43	0.00	2.86	7.15	2.65	0.00	0.67	3.32	3.56	0.00	3.02	10.12	0.00
6	IG23_SR2	SilentIntergenicRegion	0	1.44	2.17	0.80	0.94	1.41	1.58	0.19	1.95	2.22	3.88	0.68	0.46	0.35	0.72	3.00	3.77	2.89	0.74	1.23	1.27	2.27	0.35	0.17	3.65	0.89	0.30	1.76	6.47	1.80
7	ER1a	ExonRegion	0	11.47	19.30	6.39	10.52	5.12	12.40	15.78	10.48	17.07	18.15	2.49	9.56	4.53	20.85	30.19	20.42	34.63	21.83	55.36	24.95	12.16	3.85	4.37	11.40	12.25	12.09	1.28	55.73	6.03
8	E1_Da	NovelBoundary	0	15.04	4.65	2.49	0.00	12.97	11.28	10.81	0.00	12.15	7.75	0.00	8.34	1.88	9.02	9.97	3.67	24.45	19.14	24.28	7.36	10.75	2.48	0.00	15.13	5.49	1.97	2.14	48.66	13.96
9	E1a_E2a	KnownJunction	0	7.26	22.78	3.64	0.00	0.00	7.17	17.11	12.54	7.61	0.00	0.00	2.92	0.00	7.87	26.71	3.06	27.17	9.25	48.55	0.00	9.83	0.00	0.00	5.74	8.71	0.00	0.00	43.67	3.14
10	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	13.26	0.00	2.75	0.00	0.00	3.71	0.00	3.31	0.00	1.09	9.57	3.14	6.69	0.00	0.00	8.19	2.01	6.86	0.00	13.10	4.89	0.00	0.00	1.80	0.00
11	I1	Intron	0	7.05	6.47	2.27	2.05	6.11	6.59	3.75	4.21	8.28	12.03	3.06	4.06	1.06	5.77	11.76	8.62	12.71	7.57	17.02	9.18	6.53	1.68	0.91	5.92	4.24	2.08	1.11	14.11	1.63
12	I1_SR1	SilentIntronRegion	0	6.38	9.55	1.98	3.11	8.56	7.89	5.99	4.57	12.30	19.32	3.67	5.38	0.81	7.87	14.16	10.68	18.69	8.66	18.71	10.98	12.42	2.16	1.44	6.90	4.23	3.35	1.46	13.66	2.45
13	I1_AR1	ActiveIntronRegion	0	7.38	5.40	2.41	1.68	5.28	6.18	2.96	4.13	6.89	9.46	2.88	3.61	1.17	5.06	11.01	7.96	10.63	7.25	16.60	8.63	4.42	1.52	0.72	5.63	4.30	1.63	1.00	14.44	1.34
14	E2_Aa	NovelBoundary	0	0.00	3.49	0.00	0.00	0.00	11.51	5.66	2.39	4.17	1.72	1.33	0.00	0.00	0.00	17.74	0.00	1.01	9.12	0.00	0.00	1.93	0.00	0.00	2.39	0.00	0.00	0.00	2.07	0.00
15	ER2a	ExonRegion	0	9.72	8.49	4.63	18.52	1.62	7.84	15.92	9.41	13.38	11.92	0.79	5.53	0.00	13.95	29.13	13.54	28.33	21.14	28.01	25.20	6.71	2.96	0.83	5.41	6.61	7.26	1.21	32.98	6.25
16	E2_Da	NovelBoundary	0	5.13	12.99	0.00	9.27	0.00	0.00	8.64	11.60	4.54	7.43	1.20	1.54	0.00	4.28	0.00	3.82	11.75	4.62	8.09	0.00	0.00	1.94	0.00	0.00	1.70	10.56	0.00	4.36	3.04
17	E2a_E3a	KnownJunction	0	0.00	4.85	2.14	0.00	0.00	8.82	11.04	6.47	2.62	4.07	0.00	1.27	0.00	4.10	7.57	0.00	4.01	23.89	24.28	7.61	6.14	1.85	2.31	5.86	8.83	0.00	0.00	9.21	0.00
18	I2	Intron	0	4.56	4.92	1.60	1.81	2.40	4.78	4.49	4.43	5.93	9.60	1.78	3.06	1.11	6.35	11.10	6.89	16.96	9.53	10.22	6.82	4.46	0.75	0.93	2.90	3.44	3.11	1.06	20.57	2.19
19	I2_SR1	SilentIntronRegion	0	2.67	6.76	1.56	4.32	3.99	3.86	3.69	4.89	6.98	8.87	1.42	3.40	2.91	4.87	13.18	3.48	14.51	9.99	11.41	5.05	3.15	0.51	0.76	3.56	3.99	2.48	1.54	16.91	1.86
20	I2_AR1	ActiveIntronRegion	0	3.24	3.73	5.00	4.15	8.89	2.53	4.63	0.45	9.02	5.70	3.31	0.74	2.04	11.40	16.20	3.49	15.11	8.41	3.55	22.56	5.36	1.80	0.00	11.63	4.09	3.14	0.00	21.50	2.00
21	I2_SR2	SilentIntronRegion	0	6.12	0.00	3.37	0.00	9.96	7.17	7.63	0.00	6.18	6.50	4.76	1.24	3.62	11.40	20.00	8.32	22.97	16.38	10.99	27.30	7.74	1.67	0.00	10.76	3.68	0.45	0.92	24.68	0.38
22	I2_AR2	ActiveIntronRegion	0	7.50	0.00	2.24	6.40	4.98	6.87	6.55	1.61	6.18	18.23	1.19	2.01	3.90	11.00	13.30	11.07	25.67	19.79	13.58	12.65	6.42	0.00	0.00	4.30	3.04	0.00	1.83	31.38	0.00
23	I2_AR3	ActiveIntronRegion	0	12.22	0.00	2.36	14.63	0.00	6.05	9.88	1.84	10.11	30.75	1.67	10.14	5.20	12.25	23.52	16.20	32.06	26.75	7.69	9.28	5.85	0.36	0.00	6.88	4.29	0.00	10.99	34.88	2.01
24	I2_AR4	ActiveIntronRegion	0	13.64	0.00	1.53	14.63	0.00	2.00	8.06	1.84	9.60	31.50	1.19	11.13	3.90	11.38	37.68	14.26	29.51	22.33	11.11	6.64	5.58	1.80	0.00	10.36	3.64	0.00	10.32	30.38	3.90
25	I2_AR5	ActiveIntronRegion	0	11.79	0.00	1.12	14.63	0.00	1.37	7.31	1.84	11.52	30.50	1.19	11.13	3.90	12.13	48.31	14.55	31.30	26.95	9.05	6.68	5.71	1.80	0.00	10.76	6.07	0.00	9.16	26.90	11.24
26	I2_SR3	SilentIntronRegion	0	6.21	3.59	0.77	0.25	4.68	3.73	2.08	1.77	7.84	7.72	1.28	3.06	0.82	7.75	14.19	4.68	11.16	10.66	7.11	3.72	5.92	0.19	1.56	2.67	2.10	1.81	2.69	15.64	3.21
27	I2_AR6	ActiveIntronRegion	0	5.45	1.79	2.15	1.21	1.47	4.67	4.88	4.87	3.68	9.68	2.94	3.13	0.44	5.20	11.10	5.14	18.57	9.35	13.54	4.40	4.09	0.56	0.98	2.68	3.76	2.30	0.73	27.69	2.87
28	I2_AR7	ActiveIntronRegion	0	3.96	2.27	1.26	0.56	2.68	4.67	4.37	2.46	9.32	10.01	0.27	1.05	1.18	3.60	3.55	7.12	11.35	5.72	5.42	3.18	4.53	0.94	1.03	2.70	2.65	2.23	0.90	23.09	1.26
29	I2_SR4	SilentIntronRegion	0	0.00	3.28	1.12	0.00	0.00	4.12	3.46	5.52	13.96	10.31	0.00	1.24	1.30	4.66	5.60	10.85	7.01	5.46	23.28	8.03	2.85	0.00	1.81	2.15	2.86	1.57	0.00	8.85	0.00
30	I2_AR8	ActiveIntronRegion	0	1.93	0.49	1.12	0.00	0.00	3.30	0.15	6.49	10.45	7.36	0.00	1.92	1.72	3.04	4.34	10.69	5.18	1.50	9.39	8.50	3.67	0.00	1.27	1.29	1.93	0.16	0.00	6.23	0.00
31	I2_SR5	SilentIntronRegion	0	3.41	5.68	1.77	1.67	3.13	5.79	5.40	3.73	6.41	10.36	1.66	3.10	0.73	6.17	9.42	8.06	15.07	10.11	9.11	9.50	4.42	1.57	1.47	3.26	4.24	3.66	0.21	20.17	2.61
32	I2_AR9	ActiveIntronRegion	0	5.72	6.91	1.18	0.72	0.49	5.05	4.57	5.75	4.85	9.16	1.68	3.04	0.46	8.30	10.96	9.78	21.65	8.86	9.65	8.11	5.17	0.45	0.46	1.73	2.59	4.59	1.01	18.63	1.55
33	Ix	Intron	0	2.57	3.07	1.48	1.23	2.23	3.61	4.66	3.73	6.49	8.24	0.95	1.69	0.89	4.03	11.23	6.08	15.41	8.12	7.84	6.16	4.27	0.98	0.93	3.25	2.32	3.54	1.41	16.55	1.13
34	Ix_AR1	ActiveIntronRegion	0	3.93	4.48	2.10	3.46	3.30	4.90	5.05	6.39	11.23	11.69	1.38	3.33	1.75	5.98	14.97	6.39	24.47	10.15	7.39	10.59	7.15	1.39	0.70	5.39	3.03	3.79	3.53	23.88	1.87
35	Ix_SR1	SilentIntronRegion	0	2.00	2.48	1.22	0.29	1.78	3.07	4.50	2.61	4.50	6.80	0.77	1.00	0.53	3.21	9.67	5.95	11.63	7.28	8.04	4.30	3.07	0.80	1.03	2.36	2.03	3.44	0.52	13.49	0.81
36	Ix	Intron	0	4.37	5.44	1.33	0.36	2.92	4.72	6.51	5.50	9.96	11.21	1.18	1.87	0.74	6.71	24.04	12.38	24.36	8.87	8.90	6.98	4.61	1.17	0.63	5.46	4.20	4.38	0.82	23.60	2.56
37	Ix_SR1	SilentIntronRegion	0	4.38	5.45	1.33	0.36	2.92	4.73	6.52	5.51	9.98	11.23	1.19	1.88	0.74	6.72	24.09	12.41	24.41	8.88	8.92	6.99	4.62	1.17	0.63	5.47	4.20	4.39	0.82	23.64	2.57
38	I2	Intron	0	6.14	5.91	1.55	3.33	5.67	6.81	8.42	9.97	10.63	11.85	1.57	5.11	3.31	8.76	36.20	16.33	36.62	11.13	10.14	5.09	4.97	0.56	0.70	10.49	6.75	4.99	0.00	22.33	1.81
39	I2_SR1	SilentIntronRegion	0	2.50	3.37	0.38	2.27	1.08	4.35	8.33	1.92	3.94	4.51	1.49	2.14	1.64	3.67	22.40	9.48	24.74	7.46	9.39	4.99	3.31	0.57	0.35	5.69	4.78	0.59	0.00	7.37	0.18
40	I2_AR1	ActiveIntronRegion	0	7.34	6.76	1.94	3.69	7.18	7.64	8.49	12.63	12.84	14.27	1.60	6.08	3.86	10.44	40.83	18.62	40.62	12.37	10.42	5.15	5.52	0.56	0.82	12.09	7.41	6.44	0.00	27.27	2.35
41	E3_Aa	NovelBoundary	1	56.15	364.92	50.65	232.52	314.05	120.09	39.76	91.37	194.87	203.08	199.42	120.03	321.66	124.10	204.10	109.24	79.75	204.85	388.44	44.74	163.77	87.27	301.56	178.97	151.73	255.04	262.40	403.89	64.54
42	ER3a	ExonRegion	0	0.35	1.40	1.84	5.92	0.81	1.35	4.57	1.91	0.92	1.93	0.40	0.87	0.00	1.86	3.53	0.82	6.72	4.37	6.28	4.96	1.50	1.76	0.20	1.86	1.06	1.05	0.00	4.04	0.22