Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	NINJ2	Gene	0	75.31	18.80	42.57	32.26	13.73	35.60	65.51	74.33	47.76	37.69	39.91	42.27	17.10	36.95	53.86	34.89	39.15	11.70	10.59	42.78	11.74	90.55	20.66	40.05	73.96	122.02	91.95	5.69	45.74
2	433832	Transcript	0	11.35	0.17	2.25	0.24	0.62	1.08	4.04	3.97	2.30	2.20	1.95	3.59	0.78	2.42	0.99	3.75	2.91	0.62	1.35	1.36	0.99	2.47	0.79	1.40	2.52	6.62	4.29	0.26	3.48
3	305108	Transcript	0	0.00	0.00	1.12	7.31	0.00	0.00	0.00	0.00	3.37	0.00	0.00	1.24	0.00	0.00	5.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	1.57	0.00	0.00	1.34
4	397265	Transcript	0	0.21	0.00	0.00	0.00	0.00	0.14	0.07	0.25	0.00	0.14	0.16	0.12	0.13	0.00	0.00	0.42	0.00	0.36	0.00	0.00	0.00	0.18	0.18	0.00	0.14	0.31	0.00	0.00	0.00
5	IG10_AR9	ActiveIntergenicRegion	0	41.17	30.19	11.60	4.63	0.79	60.12	4.23	8.93	5.43	53.59	10.57	11.05	6.07	43.54	0.74	110.58	17.83	65.66	35.58	9.09	47.42	23.86	40.00	5.55	13.15	34.24	5.62	31.31	4.65
6	IG10_AR8	ActiveIntergenicRegion	0	2.52	1.44	2.87	3.46	2.25	1.77	2.87	0.67	1.89	1.76	0.79	1.82	0.35	0.82	1.27	0.56	2.37	0.12	2.00	0.55	0.17	0.65	0.32	1.80	1.21	2.93	1.79	1.26	0.40
7	IG10_SR6	SilentIntergenicRegion	0	8.82	1.28	5.90	4.70	0.68	1.84	1.25	0.21	4.23	2.96	0.27	2.41	0.37	0.94	6.93	1.06	1.18	0.22	2.86	0.53	0.33	0.62	0.21	0.25	0.00	0.74	1.79	1.88	0.16
8	IG10_AR6	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.42	2.06	6.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00
9	IG10_AR5	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.03	2.72	5.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.75	0.00	0.00	0.00	0.00	0.00
10	IG10_SR4	SilentIntergenicRegion	0	0.00	0.00	0.46	4.67	0.43	0.00	0.88	0.01	0.14	8.35	2.62	8.89	0.30	0.02	0.00	0.02	0.08	0.03	0.00	0.07	0.00	0.00	0.06	0.00	0.00	0.05	0.03	0.00	0.02
11	IG10_AR4	ActiveIntergenicRegion	0	0.00	0.00	0.86	1.85	4.40	0.00	0.78	0.00	0.00	5.76	1.84	7.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	IG10_SR1	SilentIntergenicRegion	0	6.25	0.00	0.00	0.00	4.70	0.00	8.64	1.58	0.26	0.00	2.99	2.09	3.30	4.20	0.00	0.65	4.32	0.00	1.81	0.64	0.00	0.00	0.00	0.00	2.65	8.85	1.62	0.00	11.04
13	IG10_AR1	ActiveIntergenicRegion	0	3.30	0.00	0.00	0.00	2.29	0.00	2.23	1.04	0.00	0.00	0.55	1.47	0.60	1.59	0.00	0.00	0.35	0.00	2.69	0.00	0.00	0.00	0.00	0.00	0.58	3.61	0.00	0.00	5.59
14	ER1a	ExonRegion	0	13.13	0.00	1.24	0.48	0.72	0.46	7.34	6.17	1.83	0.71	3.14	4.37	1.00	2.18	1.39	4.73	3.20	0.00	2.37	0.92	0.61	1.28	0.00	0.75	3.54	7.86	3.90	0.00	4.63
15	E1_Ab	KnownBoundary	0	35.75	0.00	5.26	0.00	7.37	0.00	7.95	14.18	10.78	1.88	0.00	2.68	4.78	3.94	0.00	5.97	5.40	0.00	8.09	0.00	1.76	0.00	0.00	0.00	5.27	0.00	14.51	0.00	10.33
16	ER1b	ExonRegion	0	62.83	6.85	26.67	10.93	6.22	4.43	26.51	66.73	12.65	14.09	12.55	24.67	5.49	9.60	4.94	12.94	15.84	2.58	2.41	3.91	2.14	29.02	8.47	6.91	8.30	54.74	33.51	0.75	14.59
17	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	19.22	2.09	1.28	1.68	1.61	1.23	1.34	1.86	0.00	0.00	1.89	0.00	0.00	0.00	1.64	0.00	0.00	0.00	3.07	0.00	0.00	1.89	5.81
18	E1a_E3a	KnownJunction	0	100.63	27.82	6.80	0.00	0.00	1.96	25.17	204.54	11.85	15.34	9.24	25.75	4.71	17.37	0.00	10.02	12.11	4.62	0.00	15.13	0.00	60.53	4.97	5.32	12.54	47.25	1.94	0.00	16.64
19	I1_SR2	SilentIntronRegion	0	2.27	1.32	1.60	4.59	1.37	1.43	0.48	0.40	2.62	1.79	2.26	4.94	0.10	5.81	1.07	4.32	4.42	0.80	2.62	0.33	3.76	2.20	0.25	4.13	1.06	4.62	1.35	0.42	2.65
20	Ix	Intron	0	16.35	4.18	17.53	37.59	0.00	12.45	16.33	6.14	18.70	11.71	5.67	9.70	1.86	16.84	7.01	18.26	19.92	5.82	6.09	20.65	19.72	17.18	2.59	22.56	10.22	5.24	10.48	5.44	4.47
21	Ix_AR1	ActiveIntronRegion	0	16.50	4.21	17.69	37.94	0.00	12.57	16.47	6.20	18.87	11.82	5.73	9.79	1.87	16.99	7.08	18.43	20.10	5.87	6.15	20.84	19.90	17.33	2.61	22.77	10.32	5.29	10.57	5.49	4.51
22	I1_AR2	ActiveIntronRegion	0	1.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.02	0.00	0.00	0.00	0.00	0.67	0.00	0.56	1.05	2.18	0.00	2.19	0.00	0.48	0.00	0.00	0.00	1.19	0.00	0.00	0.00
23	I1_AR3	ActiveIntronRegion	0	8.15	4.37	1.77	29.94	11.37	0.77	1.25	6.82	6.30	3.51	2.01	2.61	2.72	3.66	1.42	9.73	6.07	2.55	3.60	8.66	1.91	3.05	3.06	2.42	0.40	34.41	10.27	0.92	1.59
24	I1_SR3	SilentIntronRegion	0	2.70	1.62	0.34	2.18	1.56	1.17	0.99	1.00	3.97	2.91	1.37	1.35	0.59	0.90	1.93	2.11	5.75	0.92	0.46	0.85	1.05	0.55	0.13	1.71	0.74	2.59	1.46	0.28	1.64
25	I1_AR4	ActiveIntronRegion	0	3.63	6.50	0.00	10.86	0.00	0.73	1.12	4.61	4.37	5.35	2.16	2.91	2.87	4.12	2.77	4.28	8.06	0.97	4.84	8.96	1.44	8.17	1.83	0.00	0.00	10.22	5.55	0.00	3.19
26	I1_SR4	SilentIntronRegion	0	2.91	0.00	0.00	0.00	0.00	0.85	1.71	1.34	6.63	1.92	2.96	1.96	0.40	0.98	4.68	1.00	5.37	0.60	0.00	0.86	2.01	0.56	1.12	4.95	0.62	1.64	5.04	0.00	1.46
27	I1_AR5	ActiveIntronRegion	0	5.93	0.00	0.00	0.00	1.90	0.00	0.83	6.82	7.83	1.57	0.00	1.38	0.42	0.19	5.11	2.61	8.31	0.00	0.00	2.40	2.56	0.00	0.00	1.96	1.30	3.74	4.63	0.00	2.61
28	I1_SR5	SilentIntronRegion	0	2.28	1.09	0.61	4.55	0.76	0.88	0.46	0.75	4.25	3.84	1.01	1.13	0.54	1.09	2.43	2.79	5.73	1.23	0.54	1.88	2.25	0.71	0.31	1.82	1.45	4.66	2.84	0.37	1.83
29	I1_AR6	ActiveIntronRegion	0	2.57	2.52	2.22	63.35	34.35	0.49	1.08	6.05	2.46	4.51	5.67	2.08	0.86	2.04	0.59	3.57	9.21	8.04	3.24	11.24	2.27	7.40	2.91	0.00	0.00	75.59	8.43	1.82	2.92
30	I1_AR7	ActiveIntronRegion	0	1.34	1.69	0.00	0.00	0.00	0.93	0.58	1.24	3.99	0.81	1.38	0.36	1.00	0.59	0.89	1.72	5.74	0.93	0.00	0.53	0.81	0.35	0.00	2.75	0.83	2.90	1.42	0.00	1.29
31	I1_SR7	SilentIntronRegion	0	0.65	0.24	0.00	1.06	0.00	0.51	0.15	0.14	3.79	1.28	0.09	0.68	0.19	0.43	1.08	0.55	1.84	0.28	0.47	0.41	0.73	0.20	0.00	1.24	0.74	1.39	1.21	0.60	2.30
32	I1_AR8	ActiveIntronRegion	0	0.95	0.51	0.00	0.00	0.00	0.09	0.76	0.01	4.14	2.07	0.12	1.28	0.00	0.36	1.58	0.40	0.54	0.00	0.00	0.88	0.46	0.43	0.00	0.75	1.14	0.23	0.00	0.00	1.03
33	I1_AR9	ActiveIntronRegion	0	17.86	8.60	0.32	12.54	18.27	33.61	5.76	30.86	5.51	9.45	22.30	8.25	2.13	12.14	9.33	12.29	2.34	25.34	12.61	22.35	12.09	74.00	5.30	13.06	43.36	24.58	28.48	5.94	18.98
34	ER2a	ExonRegion	0	0.21	0.00	0.00	0.00	0.00	0.14	0.07	0.25	0.00	0.14	0.16	0.12	0.13	0.00	0.00	0.42	0.00	0.36	0.00	0.00	0.00	0.18	0.18	0.00	0.14	0.31	0.00	0.00	0.00
35	ER3a	ExonRegion	0	129.84	31.19	66.49	36.40	17.66	68.35	132.30	140.55	67.62	67.43	61.36	91.76	40.18	59.08	95.14	80.10	83.95	26.55	22.83	72.62	18.36	169.00	43.46	62.55	112.40	278.32	178.81	11.27	80.95
36	E3_Da	KnownBoundary	0	19.88	0.00	2.74	0.00	0.00	1.92	2.92	0.00	4.84	0.00	0.00	4.04	0.00	0.00	0.00	0.00	2.43	0.00	0.00	0.00	0.00	0.00	2.12	0.00	3.83	4.38	0.00	0.00	6.47
37	E3a_E4a	KnownJunction	0	138.73	39.17	139.35	48.96	52.02	53.79	153.22	128.55	81.86	61.72	68.11	94.40	46.02	70.70	98.66	42.15	105.73	33.39	16.18	80.14	14.80	128.84	35.31	85.42	104.34	150.76	178.91	9.80	124.30
38	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
39	ER3b	ExonRegion	0	9.57	0.34	3.27	0.00	0.52	1.70	0.74	1.76	2.77	3.69	0.76	2.82	0.55	2.65	0.58	2.77	2.63	1.25	0.34	1.81	1.37	3.65	1.59	2.06	1.49	5.38	4.68	0.52	2.33
40	E3_Db	NovelBoundary	0	10.32	0.00	3.84	0.00	0.00	0.00	0.00	2.24	0.00	0.00	0.00	5.84	0.00	1.37	0.00	0.00	5.00	0.00	0.00	3.31	0.00	9.67	2.17	5.32	0.00	3.30	0.00	0.00	1.42
41	I3	Intron	0	1.58	1.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.07	0.88	0.00	0.00	0.00	3.41	1.83	0.00	0.00	2.36	0.00	0.00	0.00	0.00	0.00	0.00	5.81	2.71	0.00	0.00
42	I3_AR1	ActiveIntronRegion	0	1.63	1.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.10	0.91	0.00	0.00	0.00	3.51	1.89	0.00	0.00	2.43	0.00	0.00	0.00	0.00	0.00	0.00	5.98	2.79	0.00	0.00
43	E4_Aa	NovelBoundary	0	3.01	0.00	5.41	0.00	0.00	3.91	0.00	2.54	8.37	0.00	0.00	1.14	0.00	0.84	0.00	0.00	0.86	0.00	0.00	0.00	2.05	2.48	0.00	0.00	5.27	4.12	6.66	0.00	3.70
44	ER4a	ExonRegion	0	169.82	46.04	130.28	139.77	62.47	95.93	169.09	186.99	98.85	91.41	114.21	104.51	43.67	95.73	152.61	92.62	93.28	29.90	26.40	122.01	28.94	225.22	44.33	113.58	186.67	257.64	243.21	15.71	112.66
45	E4_Da	NovelBoundary	0	0.00	0.00	1.12	0.00	0.00	0.00	0.00	1.99	14.16	5.91	0.00	1.54	0.00	0.00	0.00	6.88	2.34	4.62	0.00	3.39	0.00	1.94	0.00	0.00	5.61	6.14	4.97	0.00	4.89
46	E4a_E5a	KnownJunction	0	150.18	36.07	115.46	53.49	36.55	112.07	223.60	155.72	93.28	106.49	106.92	72.80	45.95	92.77	190.35	80.32	86.39	47.01	15.96	93.20	18.45	244.16	50.14	98.76	166.05	320.87	232.29	15.64	69.63
47	I4	Intron	0	6.45	0.44	0.91	0.00	0.00	1.50	0.83	1.01	1.15	1.18	0.33	1.10	0.00	0.56	1.38	0.68	1.63	1.14	0.00	0.38	0.20	1.23	1.73	2.06	0.78	1.07	9.27	0.00	0.73
48	I4_AR1	ActiveIntronRegion	0	7.38	0.50	1.05	0.00	0.00	1.71	0.95	1.15	1.32	1.36	0.37	1.26	0.00	0.64	1.58	0.78	1.87	1.31	0.00	0.43	0.22	1.41	1.98	2.36	0.89	1.23	10.60	0.00	0.84
49	E5_Aa	NovelBoundary	0	11.03	0.00	0.00	0.00	0.00	3.80	2.92	0.00	1.40	2.04	0.00	1.54	0.00	0.00	9.97	0.00	3.80	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00	0.00	14.31	0.00	0.00
50	ER5a	ExonRegion	0	118.48	38.41	65.70	47.92	15.79	67.27	111.43	109.30	113.29	70.22	76.53	62.37	26.81	73.53	106.48	49.87	65.17	18.86	18.14	84.34	24.31	171.78	37.58	79.91	165.52	209.79	158.17	10.07	87.75
51	ER5b	ExonRegion	0	0.00	0.00	1.12	7.31	0.00	0.00	0.00	0.00	3.37	0.00	0.00	1.24	0.00	0.00	5.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	1.57	0.00	0.00	1.34