Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C12orf32	Gene	0	231.80	239.01	182.74	435.11	416.14	229.32	280.29	414.52	311.93	266.50	314.72	185.34	411.37	204.97	360.86	216.50	207.19	203.14	388.40	251.48	174.11	218.48	245.90	224.24	250.06	342.24	207.56	403.65	200.44
2	489288	Transcript	1	17.15	10.51	12.57	92.14	138.49	12.10	8.47	11.78	4.49	15.30	12.62	6.93	10.39	2.90	20.16	29.36	3.81	21.29	20.82	7.31	2.00	8.29	10.13	0.43	10.58	18.55	10.99	55.10	10.20
3	464682	Transcript	0	12.80	0.00	34.28	218.28	104.78	13.24	30.09	39.96	32.83	20.25	11.29	10.36	40.06	14.76	0.00	32.13	16.39	5.39	8.09	12.24	5.66	25.96	16.20	8.13	24.17	25.23	2.24	6.07	44.47
4	461997	Transcript	0	10.91	0.00	3.36	0.00	7.37	1.61	15.51	6.87	9.04	13.26	3.16	14.49	8.76	5.81	16.54	12.62	12.61	9.25	0.00	0.00	1.76	10.11	6.99	14.36	10.46	17.42	11.18	9.48	13.90
5	303648	Transcript	0	3.10	10.77	12.28	30.47	37.64	11.61	9.18	5.73	37.89	9.14	14.02	7.35	23.09	4.43	38.58	5.76	4.73	27.44	43.00	3.59	13.15	4.21	10.95	14.10	19.06	20.52	9.56	35.68	15.58
6	ER1a	ExonRegion	1	17.15	10.51	12.57	92.14	138.49	12.10	8.47	11.78	4.49	15.30	12.62	6.93	10.39	2.90	20.16	29.36	3.81	21.29	20.82	7.31	2.00	8.29	10.13	0.43	10.58	18.55	10.99	55.10	10.20
7	ER1b	ExonRegion	1	45.55	19.71	26.37	182.82	264.02	27.49	22.68	28.54	17.41	40.43	25.59	11.13	19.49	5.44	29.40	60.74	9.02	34.11	36.21	14.76	10.34	14.42	23.96	2.69	15.72	40.47	29.30	93.73	18.79
8	ER1c	ExonRegion	0	294.71	108.40	322.38	2057.83	2435.30	221.81	391.67	553.54	182.62	240.45	269.79	186.50	511.72	147.70	326.83	561.31	167.10	301.92	224.07	273.16	138.92	429.75	322.67	125.61	179.20	800.44	242.76	752.58	379.17
9	E1_Da	NovelBoundary	0	0.00	0.00	5.28	9.49	13.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.17	0.00	0.00	8.58	0.00	0.00	0.00	1.68	2.19	0.00	0.00	0.00	0.00	0.00	2.07	0.00
10	E1a_E2a	KnownJunction	0	267.44	64.18	559.54	964.79	1214.05	177.49	327.90	342.89	186.95	111.77	142.74	201.89	566.70	133.67	258.12	360.69	297.46	85.28	97.11	151.01	122.02	435.81	283.88	62.69	129.91	642.60	148.40	652.81	385.80
11	E1a_E3a	KnownJunction	0	12.80	0.00	34.28	218.28	104.78	13.24	30.09	39.96	32.83	20.25	11.29	10.36	40.06	14.76	0.00	32.13	16.39	5.39	8.09	12.24	5.66	25.96	16.20	8.13	24.17	25.23	2.24	6.07	44.47
12	I1_SR1	SilentIntronRegion	0	3.44	0.00	0.57	0.82	1.12	2.05	1.39	2.74	1.74	1.65	1.36	0.49	1.56	2.39	1.69	1.91	4.96	3.61	4.39	5.47	1.31	0.41	0.21	1.73	0.82	5.40	0.00	5.23	0.84
13	I1_AR2	ActiveIntronRegion	0	2.18	2.74	2.47	0.00	3.03	7.01	2.67	0.78	6.00	1.23	0.00	2.27	0.83	4.89	3.92	5.86	9.47	4.23	1.58	0.00	1.21	0.69	0.00	5.65	6.92	2.83	0.78	6.40	1.58
14	E2_Aa	NovelBoundary	0	7.90	4.85	1.20	0.00	0.00	3.80	0.00	4.43	6.18	5.39	5.82	1.20	8.82	5.76	8.37	10.40	22.01	0.00	0.00	9.59	1.48	6.47	4.43	5.86	1.63	7.98	0.00	2.29	1.45
15	ER2a	ExonRegion	0	235.07	122.12	118.19	294.00	236.03	177.40	259.83	398.80	188.92	173.09	170.25	153.51	446.56	159.00	221.92	274.39	160.08	188.85	170.75	257.39	118.70	290.08	190.41	147.92	166.22	468.17	98.35	407.92	264.43
16	E2_Da	KnownBoundary	1	254.05	97.92	57.55	226.91	205.29	160.30	338.77	432.76	192.76	246.78	443.58	273.34	691.88	269.25	271.67	184.97	270.25	180.57	201.86	277.54	127.59	254.17	407.29	245.48	202.88	941.41	275.57	985.21	426.40
17	E2a_E3a	KnownJunction	0	10.91	0.00	3.36	0.00	7.37	1.61	15.51	6.87	9.04	13.26	3.16	14.49	8.76	5.81	16.54	12.62	12.61	9.25	0.00	0.00	1.76	10.11	6.99	14.36	10.46	17.42	11.18	9.48	13.90
18	ER2b	ExonRegion	0	254.72	123.18	113.60	273.88	386.07	133.38	259.26	415.21	180.81	220.04	336.49	232.06	545.09	255.94	261.23	156.60	248.50	188.64	231.36	295.66	106.16	201.26	316.92	189.51	234.68	545.13	235.31	633.27	289.91
19	E2_Db	NovelBoundary	0	10.91	0.00	0.00	7.98	7.07	7.56	5.84	4.88	14.74	1.92	6.45	1.45	0.00	0.00	0.00	10.10	2.68	0.00	0.00	3.06	1.72	4.86	0.00	5.92	1.82	7.64	1.89	7.50	0.00
20	E2b_E3a	KnownJunction	0	292.92	198.36	193.89	408.95	812.31	135.05	251.80	436.05	190.72	223.66	302.17	184.09	423.15	249.11	318.71	164.32	232.48	221.93	299.20	305.99	139.66	196.75	227.68	203.67	272.02	379.92	227.32	451.20	212.14
21	I2	Intron	0	3.06	5.83	2.07	8.90	0.91	3.67	2.50	2.06	8.00	2.78	2.73	1.87	1.93	2.36	9.18	1.45	6.11	2.43	1.98	2.47	2.65	0.89	0.56	3.20	2.22	2.24	1.93	6.07	0.96
22	I2_AR5	ActiveIntronRegion	0	4.61	10.59	3.15	14.47	0.66	6.02	4.07	2.73	10.54	2.72	4.64	2.23	3.58	2.97	14.35	2.82	8.23	3.97	3.44	3.34	3.45	1.88	0.49	5.14	3.84	4.01	2.46	9.00	1.17
23	I2_SR3	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	3.36	0.00	0.00	1.00	0.00	0.00	0.41	0.00	0.40	5.60	0.00	0.33	0.00	0.00	0.00	0.00	2.40	0.00	3.11	0.00	0.17	0.00	0.00	0.00
24	I2_SR4	SilentIntronRegion	0	1.02	0.76	1.98	3.40	1.16	1.63	1.43	1.75	7.45	3.42	1.13	0.29	0.77	1.61	6.30	0.59	4.60	1.37	1.52	1.78	1.69	0.00	0.00	1.02	0.34	0.37	0.87	1.93	0.32
25	I2_SR5	SilentIntronRegion	0	3.14	3.51	0.49	6.30	1.43	2.01	1.18	1.62	5.59	2.96	1.40	3.61	0.38	2.65	4.06	0.00	5.24	1.13	0.00	2.20	2.93	0.00	1.59	2.52	1.68	1.38	2.68	6.69	1.57
26	E3_Aa	NovelBoundary	0	0.00	8.92	3.81	0.00	17.68	0.00	2.29	4.38	1.25	3.24	0.00	1.17	3.69	3.01	7.57	6.12	8.08	4.62	0.00	0.00	0.00	0.00	0.00	0.00	1.63	5.79	0.00	2.29	2.91
27	ER3a	ExonRegion	0	308.74	312.85	256.88	522.53	490.91	306.52	367.08	542.78	407.77	363.58	431.53	246.82	514.48	267.79	468.07	247.79	275.90	258.38	503.64	332.00	234.99	267.99	328.51	298.63	345.43	400.98	276.04	503.58	232.17
28	E3_Da	KnownBoundary	0	145.28	462.36	149.09	752.77	776.65	693.92	594.06	158.55	894.85	368.62	453.39	191.47	544.73	171.71	831.96	264.38	185.05	243.38	1034.94	273.40	617.30	116.10	212.71	329.40	204.62	338.59	432.12	472.27	320.26
29	ER3b	ExonRegion	0	64.19	203.92	44.98	140.79	106.57	124.94	119.89	164.70	229.38	131.41	161.78	76.78	187.26	115.16	259.83	114.32	102.89	93.27	360.45	84.38	100.59	69.45	92.31	136.12	108.14	106.86	124.52	149.78	91.43
30	E3_Db	KnownBoundary	0	58.75	127.49	18.74	50.47	46.42	62.54	51.21	110.43	220.35	72.06	104.93	49.22	110.09	78.59	296.99	103.43	61.90	55.48	291.33	50.36	64.70	42.93	66.49	92.53	79.07	81.84	64.46	101.59	65.37
31	ER3c	ExonRegion	0	20.76	80.70	12.30	71.70	29.24	33.81	25.73	43.49	111.54	46.23	58.47	27.86	73.60	48.44	104.09	39.92	34.98	46.78	120.38	26.64	30.63	24.09	33.78	66.55	45.14	40.67	54.71	57.67	43.58
32	ER3d	ExonRegion	1	3.10	10.77	12.28	30.47	37.64	11.61	9.18	5.73	37.89	9.14	14.02	7.35	23.09	4.43	38.58	5.76	4.73	27.44	43.00	3.59	13.15	4.21	10.95	14.10	19.06	20.52	9.56	35.68	15.58
33	IG25_AR1	ActiveIntergenicRegion	0	0.00	6.97	0.95	5.54	3.32	1.29	0.00	5.61	1.74	0.00	3.43	0.00	2.91	2.12	5.35	3.83	0.00	3.56	4.46	0.00	0.86	0.82	0.00	0.00	1.10	2.00	7.08	7.78	2.50