Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PTMS	Gene	0	260.34	356.34	394.47	94.98	146.95	339.35	221.86	167.81	940.75	479.80	112.16	169.91	285.14	422.10	168.54	305.16	274.69	468.50	138.30	157.54	247.95	737.36	455.99	824.00	436.94	287.61	165.96	143.29	265.60
2	309083	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
3	389462	Transcript	0	134.50	213.52	139.70	38.39	103.37	139.87	91.21	87.91	411.21	199.96	58.61	70.81	120.16	215.42	81.21	142.99	106.68	210.15	81.46	81.51	94.50	353.79	193.94	453.89	220.12	137.91	98.90	74.57	122.14
4	436860	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	IG26_AR4	ActiveIntergenicRegion	0	1.43	0.00	0.00	1.51	0.00	1.81	0.45	0.00	3.29	0.76	0.00	0.00	0.00	2.45	0.00	3.08	4.63	0.80	0.00	0.00	2.14	0.00	0.90	4.24	0.27	1.59	0.00	1.63	0.20
6	IG26_SR5	SilentIntergenicRegion	0	5.66	1.32	0.82	1.16	2.40	0.88	0.94	0.19	6.00	2.72	0.07	0.13	1.70	1.67	0.00	2.43	4.72	2.48	0.66	0.00	0.88	0.43	0.25	2.94	0.68	0.32	0.00	0.67	0.86
7	IG26_AR5	ActiveIntergenicRegion	0	2.83	2.86	0.16	0.00	0.48	1.90	0.89	0.82	3.03	1.67	0.22	0.00	0.95	0.85	4.09	1.89	0.00	5.98	0.00	0.00	0.00	8.56	2.14	4.51	0.00	2.77	0.00	0.00	0.60
8	ER1a	ExonRegion	0	47.28	18.50	0.92	6.41	16.14	44.34	27.10	7.68	56.09	6.73	0.00	5.16	2.43	23.01	27.45	43.97	6.61	36.28	6.91	1.56	25.28	191.47	9.74	20.79	10.10	32.60	1.09	12.79	16.11
9	ER1b	ExonRegion	0	32.81	30.70	3.71	4.22	13.60	25.59	18.06	16.00	40.71	10.38	0.69	3.38	5.60	14.58	28.86	24.72	3.16	36.53	24.54	3.78	28.14	173.69	8.42	21.84	8.03	17.17	0.56	12.16	5.01
10	ER1c	ExonRegion	0	77.76	114.47	84.17	30.54	26.54	87.36	67.11	50.22	159.85	130.73	33.50	47.01	86.44	99.20	88.39	105.92	67.27	187.57	51.48	53.78	58.97	209.81	153.04	246.90	128.02	102.80	45.17	52.32	71.52
11	E1_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.11	0.00
12	E1b_E2a	KnownJunction	1	288.26	334.96	310.24	94.90	144.57	263.55	122.15	187.22	934.37	435.85	120.15	247.10	372.26	437.62	200.71	306.00	392.20	412.00	113.29	147.04	172.31	785.12	478.85	927.98	464.74	475.70	213.30	201.83	374.41
13	ER1d	ExonRegion	0	278.35	365.80	267.85	87.75	106.39	279.16	136.35	214.49	818.48	447.05	128.62	218.31	359.27	436.94	177.62	302.24	333.57	368.83	127.05	161.01	181.86	761.66	492.62	970.94	478.42	410.20	235.88	187.45	313.01
14	I1	Intron	0	1.95	2.17	1.77	0.27	0.54	2.86	0.64	0.65	3.61	1.88	0.33	0.78	0.97	2.93	2.12	1.54	9.95	3.56	0.95	0.51	0.26	0.17	0.30	4.39	0.98	0.67	0.07	0.57	0.50
15	I1_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.45	0.00	0.00	0.00	0.00	0.00	2.15	0.00	1.57	0.00	0.00	0.00
16	I1_SR2	SilentIntronRegion	0	0.94	0.00	0.59	0.00	0.00	2.00	0.00	0.00	2.72	0.51	0.00	0.00	0.20	1.03	1.76	0.00	3.61	3.75	0.00	0.00	0.28	0.00	0.00	2.95	0.00	0.67	0.00	0.00	0.21
17	I1_AR2	ActiveIntronRegion	0	3.54	2.35	1.65	0.00	0.00	2.59	0.00	0.36	3.48	1.00	0.00	0.61	1.92	3.86	2.35	0.49	5.98	3.21	2.19	0.54	0.21	0.53	0.00	5.93	0.28	0.31	0.18	0.16	1.26
18	I1_SR3	SilentIntronRegion	0	0.59	1.93	0.66	0.00	2.59	2.47	0.00	0.00	0.53	0.50	0.00	0.00	0.45	0.81	1.38	0.87	1.41	2.86	0.00	0.00	0.50	0.00	0.00	1.21	0.00	0.55	0.00	0.00	0.47
19	I1_AR3	ActiveIntronRegion	0	3.23	2.99	2.04	0.00	1.44	2.76	1.73	1.66	4.30	2.03	1.42	1.18	0.77	3.84	1.23	3.38	13.86	4.98	0.76	0.99	0.51	0.00	0.22	5.23	2.38	0.19	0.00	0.39	1.12
20	I1_SR4	SilentIntronRegion	0	2.31	3.67	3.43	0.61	0.42	2.94	0.31	1.01	4.75	2.99	0.51	0.84	0.58	3.98	2.08	2.28	17.09	4.73	1.36	0.47	0.24	0.00	0.62	4.62	1.47	1.61	0.00	2.23	0.23
21	I1_AR4	ActiveIntronRegion	0	0.67	1.21	1.11	0.45	0.30	3.60	1.00	0.34	3.58	2.25	0.00	1.00	1.11	2.16	2.63	1.27	8.95	2.63	0.40	0.51	0.18	0.22	0.45	4.00	0.80	0.49	0.11	0.00	0.00
22	E2_Aa	NovelBoundary	0	5.84	0.00	3.09	0.00	0.00	5.06	0.00	0.00	2.71	0.00	0.00	3.73	0.00	2.19	0.00	3.82	19.43	0.00	0.00	0.00	1.56	2.48	0.00	6.10	1.93	0.00	0.00	4.58	0.00
23	ER2a	ExonRegion	0	362.10	464.59	477.22	144.22	206.87	475.48	241.58	272.22	1391.31	702.96	188.75	292.28	390.68	601.55	166.62	364.04	406.18	532.76	193.04	195.22	361.33	965.02	585.80	1267.92	702.04	443.07	241.46	213.13	394.43
24	E2_Da	NovelBoundary	0	0.00	4.27	0.00	0.00	0.00	5.06	2.92	0.00	0.00	0.00	1.61	0.00	0.00	1.97	7.37	3.82	4.68	4.62	0.00	0.00	1.89	0.00	0.00	5.74	1.93	0.00	0.00	0.00	1.68
25	E2a_E3a	KnownJunction	0	401.40	525.86	644.85	214.61	281.18	681.75	271.20	294.81	1682.90	696.13	183.54	290.99	399.55	635.47	132.35	440.63	392.94	527.21	242.55	239.91	507.16	1135.26	643.25	1570.52	872.95	463.82	342.96	187.99	363.35
26	I2	Intron	0	3.15	4.35	0.35	0.00	0.00	4.33	2.96	0.39	6.00	2.42	0.50	1.17	2.18	3.33	3.09	3.65	4.07	6.87	1.34	1.16	0.90	3.03	0.00	6.32	1.20	3.96	0.00	1.03	0.56
27	I2_AR1	ActiveIntronRegion	0	0.00	0.00	0.75	0.00	0.00	0.00	4.32	0.00	1.34	2.27	0.00	0.00	0.37	1.60	0.80	0.00	0.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	I2_SR1	SilentIntronRegion	0	2.97	2.95	0.47	0.00	0.00	4.64	1.52	0.00	3.25	2.68	0.00	0.47	1.07	2.94	1.79	2.46	5.02	2.71	1.29	1.91	0.49	0.00	0.00	4.51	0.87	2.18	0.00	0.00	0.00
29	I2_AR2	ActiveIntronRegion	0	4.37	8.43	0.00	0.00	0.00	5.00	5.48	1.27	12.86	1.99	1.64	2.89	4.92	4.61	6.36	7.08	3.29	17.19	1.83	0.00	1.95	9.92	0.00	11.80	2.22	8.62	0.00	3.33	1.85
30	E3_Aa	NovelBoundary	0	7.55	12.02	10.86	0.00	0.00	13.77	2.35	4.33	68.40	19.61	3.10	6.14	6.72	20.92	8.37	19.81	12.54	13.87	0.00	3.64	8.02	34.28	4.63	33.32	10.42	12.62	0.00	1.98	4.69
31	ER3a	ExonRegion	0	438.41	621.97	635.26	151.62	374.75	480.25	277.59	317.69	1348.66	679.38	165.50	241.41	402.96	689.39	233.03	414.30	380.12	653.27	198.22	260.11	325.07	1188.44	640.26	1596.34	789.50	430.94	269.10	204.02	357.58
32	E3_Da	NovelBoundary	0	10.20	0.00	0.00	0.00	5.75	7.67	2.63	4.28	7.67	7.19	0.00	1.33	1.97	2.26	0.00	0.00	6.12	0.00	8.09	3.06	2.05	1.99	1.82	5.98	1.67	0.00	0.00	1.66	2.58
33	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	E3a_E4b	KnownJunction	0	488.93	882.25	454.92	168.89	463.63	599.22	355.82	332.78	1692.82	769.71	214.39	260.48	433.56	759.77	398.04	506.88	376.31	787.28	315.61	305.41	389.43	1308.15	734.12	1785.43	839.16	648.52	392.91	290.30	445.65
35	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	6.93	0.00	0.00	0.00	1.25	0.00	0.00	0.00	0.00	2.55	0.00	0.00	0.00	0.00	0.00	3.56	0.00	2.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	I3	Intron	0	3.99	2.40	0.00	0.00	3.64	5.12	0.75	0.00	1.67	3.22	0.00	0.00	0.00	3.53	2.04	2.77	3.89	5.74	2.38	0.00	0.00	0.00	0.00	3.20	1.06	0.59	0.00	0.00	1.74
37	I3_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	9.96	0.52	0.00	0.00	0.00	1.08	0.00	0.00	0.00	1.47	0.00	0.00	2.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00
38	I3_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	9.96	4.67	0.00	0.00	0.00	5.28	0.00	0.00	0.00	2.70	2.88	1.45	3.49	3.82	3.36	0.00	0.00	0.00	0.00	4.73	1.43	0.00	0.00	0.00	0.00
39	I3_AR2	ActiveIntronRegion	0	5.94	3.57	0.00	0.00	0.65	5.72	1.12	0.00	2.48	2.62	0.00	0.00	0.00	4.05	1.89	3.49	4.22	6.97	2.21	0.00	0.00	0.00	0.00	2.90	0.90	0.87	0.00	0.00	2.60
40	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	6.64	0.00	2.04	2.38	0.00	0.00	1.72	0.00	1.86	0.00	6.73	1.10	4.62	0.00	0.00	1.64	1.99	0.00	2.93	1.40	0.00	0.00	0.00	0.00
41	E4_Ab	NovelBoundary	0	2.30	0.00	1.32	0.00	0.00	7.44	0.00	0.00	5.06	3.71	0.00	1.42	0.00	1.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.87	0.00	4.29	0.00	0.00	3.57
42	ER4a	ExonRegion	0	269.01	427.04	279.40	76.78	206.73	279.75	182.43	175.82	822.42	399.92	117.23	141.62	240.32	430.85	162.42	285.97	213.37	420.29	162.93	163.02	189.00	707.58	387.87	907.78	440.23	275.82	197.81	149.15	244.27
43	ER4b	ExonRegion	0	495.14	691.39	612.65	184.02	307.79	575.36	380.98	320.95	1789.18	905.25	250.14	388.85	583.47	885.25	309.59	622.10	565.27	815.98	274.22	295.03	391.09	1400.08	845.64	1603.03	822.45	584.54	357.60	284.40	587.63
44	E4_Da	NovelBoundary	0	2.54	0.00	4.76	0.00	0.00	5.03	2.29	0.00	14.07	11.02	1.23	1.23	0.00	7.73	0.00	10.71	7.23	4.62	0.00	0.00	2.05	4.38	0.00	10.05	3.49	7.72	0.00	0.00	0.00
45	E4a_E5a	KnownJunction	0	505.98	834.45	730.21	170.83	222.83	781.43	509.78	326.27	2549.61	1297.75	259.34	506.74	701.72	959.60	213.47	654.06	755.64	882.06	395.41	299.29	553.48	1418.41	990.85	1780.71	989.98	687.91	373.33	373.43	781.13
46	I4	Intron	0	4.42	3.95	2.46	2.11	1.44	3.24	3.57	1.09	6.78	3.40	0.00	0.54	0.38	5.06	7.32	2.72	7.92	9.09	1.88	1.62	1.26	1.59	1.07	4.44	2.11	2.32	0.54	0.00	1.78
47	I4_AR1	ActiveIntronRegion	0	4.47	4.00	2.49	2.14	1.46	3.28	3.60	1.10	6.86	3.44	0.00	0.55	0.39	5.12	7.40	2.75	8.01	9.19	1.91	1.64	1.28	1.60	1.08	4.49	2.13	2.34	0.55	0.00	1.80
48	E5_Aa	NovelBoundary	0	12.92	9.50	2.67	0.00	0.00	1.76	2.69	0.00	4.26	5.19	1.42	0.00	0.00	7.11	0.00	6.88	7.34	4.62	0.00	0.00	1.56	2.29	0.00	13.28	6.52	0.00	0.00	0.00	1.78
49	ER5a	ExonRegion	0	325.38	457.32	559.12	121.41	171.96	456.67	310.78	205.89	1277.75	646.52	141.88	213.32	378.44	546.17	217.23	399.13	365.43	633.51	179.11	208.40	342.47	919.75	616.20	1021.33	551.15	356.78	212.50	181.93	345.20
50	IG27_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	2.15	1.43	0.00	0.00	0.00	1.02
51	IG27_SR1	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	2.15	0.18	0.00	0.00	0.00	0.00
52	IG27_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	0.88	0.00	7.45	0.00	0.00	0.00	0.00	2.15	1.35	0.00	0.00	0.00	0.00