Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	NDUFA9	Gene	0	1033.47	522.90	268.36	1029.39	894.85	593.26	937.24	1219.62	576.75	496.33	865.17	520.68	882.27	418.69	767.12	357.11	512.13	253.79	823.14	703.70	378.20	663.84	547.80	445.68	528.46	308.72	545.35	633.39	342.64
2	266544	Transcript	0	1135.47	604.55	329.10	1276.86	1166.89	689.67	1118.54	1338.48	654.70	579.00	999.87	614.98	1035.44	471.53	924.24	432.75	623.50	306.40	1030.18	778.83	442.19	706.62	639.25	519.61	608.60	347.89	636.30	737.18	411.12
3	IG43_AR2	ActiveIntergenicRegion	0	0.53	1.00	2.98	16.49	36.00	1.51	7.29	2.21	1.63	6.21	5.06	3.35	2.72	1.89	3.34	7.57	4.63	2.67	3.69	9.13	7.29	3.26	1.91	1.56	5.87	5.68	6.62	11.49	1.50
4	IG43_SR2	SilentIntergenicRegion	0	0.00	2.61	0.15	0.00	0.00	1.06	0.00	1.76	0.87	0.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.24	10.08	2.17	0.97	0.00	0.16	0.00	0.19	0.00	0.00	0.00	1.07
5	IG43_AR3	ActiveIntergenicRegion	0	0.00	2.05	0.00	0.00	0.00	0.97	0.00	0.69	0.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.82	1.89	1.87	1.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.89
6	ER1a	ExonRegion	0	1393.55	298.37	359.48	2432.02	2473.30	437.43	798.44	1616.41	320.05	278.75	453.33	418.05	488.05	241.26	466.65	491.52	490.05	350.77	609.99	664.99	295.17	1043.88	689.99	184.89	351.98	408.09	324.86	825.90	182.58
7	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	E1a_E2a	KnownJunction	0	712.07	185.18	652.07	1443.41	1448.22	168.93	512.07	856.67	324.56	227.13	455.09	550.77	686.44	298.58	452.46	253.90	886.73	136.52	468.91	451.70	142.11	645.74	527.71	198.53	363.66	341.73	363.14	697.74	366.22
9	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.08	0.00	0.00	0.00	0.00	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	I1_AR1	ActiveIntronRegion	0	3.54	0.00	0.09	1.49	0.00	1.64	0.00	1.30	0.00	0.35	0.50	0.00	0.00	0.00	1.30	1.55	0.51	0.91	1.51	0.00	0.11	0.80	0.00	0.00	1.57	1.16	0.00	0.38	0.00
11	I1_SR3	SilentIntronRegion	0	0.19	1.60	0.00	0.00	0.85	1.31	0.35	0.32	0.58	0.25	1.88	0.00	0.00	0.16	0.48	0.86	0.70	0.17	1.67	0.96	0.87	0.00	0.00	0.56	0.39	0.00	1.11	0.57	0.00
12	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	5.45	3.53	4.92	0.00	0.00	0.00	4.84	0.00	0.00	0.00	7.77	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER2a	ExonRegion	0	1010.20	229.35	120.00	309.14	240.63	313.29	397.83	1260.92	346.17	179.34	253.26	235.80	402.71	253.32	350.84	237.36	306.43	179.82	338.85	548.46	209.39	722.17	238.18	249.63	360.59	205.77	121.44	266.31	174.53
14	E2a_E3a	KnownJunction	0	806.68	428.33	44.80	357.83	268.07	481.67	1531.58	1129.04	543.30	670.01	782.80	572.37	893.04	397.45	1243.16	874.00	694.68	602.47	1116.76	725.77	350.20	399.63	701.51	364.22	771.23	419.06	321.84	704.66	322.74
15	ER3a	ExonRegion	0	774.54	254.98	205.38	624.56	867.30	445.79	978.38	1030.84	330.67	453.49	1029.30	606.82	786.01	353.85	622.81	333.28	597.26	227.83	548.96	540.85	289.08	442.61	731.22	372.83	476.43	416.51	778.89	977.01	341.50
16	E3_Da	NovelBoundary	0	0.00	9.50	0.00	0.00	0.00	0.00	2.69	6.72	0.00	2.04	5.92	4.61	1.85	4.45	0.00	22.49	7.72	18.49	0.00	4.13	1.72	0.00	0.00	5.62	3.67	14.46	0.00	0.00	0.00
17	E3a_E4a	KnownJunction	0	786.98	283.68	518.88	1218.01	2984.86	476.06	702.94	1123.46	320.82	340.58	643.38	420.59	562.91	329.34	631.84	284.35	440.17	210.88	582.43	604.61	246.40	471.88	487.08	356.92	385.75	233.50	504.03	624.14	186.76
18	I3	Intron	0	7.37	11.69	1.36	7.90	2.31	8.98	2.70	4.30	9.02	6.21	8.84	2.14	1.46	9.12	10.01	15.25	13.36	7.24	7.46	6.55	4.75	1.28	0.85	7.34	6.00	2.19	0.77	5.69	1.86
19	I3_AR1	ActiveIntronRegion	0	12.54	12.31	2.33	9.99	5.44	6.50	1.69	6.16	1.88	4.02	7.63	2.23	2.70	5.43	4.10	12.25	5.40	4.30	5.34	5.38	5.17	0.00	0.00	2.40	5.18	2.63	0.00	5.91	0.00
20	I3_AR2	ActiveIntronRegion	0	6.87	11.69	1.27	7.73	1.99	9.29	2.82	4.13	9.82	6.48	9.01	2.14	1.34	9.56	10.68	15.65	14.26	7.58	7.72	6.71	4.74	1.42	0.95	7.89	6.12	2.15	0.85	5.70	2.06
21	E4_Aa	NovelBoundary	0	5.31	8.82	1.25	0.00	0.00	19.61	2.29	4.93	17.11	20.05	31.13	1.54	0.00	16.26	16.14	24.56	15.40	14.51	8.09	12.32	5.21	2.48	1.97	11.01	6.93	12.36	0.00	8.63	6.07
22	ER4a	ExonRegion	0	1022.32	505.80	598.00	1824.11	2029.82	684.11	991.27	1113.39	437.53	502.10	967.31	437.90	742.53	447.63	656.12	355.79	431.68	227.32	820.36	783.20	451.51	544.54	520.48	506.52	631.86	206.48	580.72	490.11	295.50
23	E4a_E5a	KnownJunction	0	1249.96	552.23	302.12	2470.97	2222.66	1123.48	1373.61	1215.93	694.16	721.50	1036.79	474.66	982.59	446.01	946.57	403.68	456.76	339.57	1011.33	896.54	784.00	584.87	566.08	742.73	823.32	221.78	831.34	509.03	424.06
24	ER5a	ExonRegion	0	1210.46	667.00	222.08	1648.08	1145.97	973.42	1323.27	1075.05	652.38	708.45	1303.76	575.06	1059.58	555.38	858.55	503.56	480.42	313.20	1150.36	948.44	646.05	587.95	676.71	662.58	818.98	211.53	800.97	576.41	345.67
25	E5a_E6a	KnownJunction	0	878.41	713.17	359.75	1835.32	883.64	934.06	1101.16	695.53	712.38	519.29	956.85	562.97	975.97	453.35	748.64	441.32	517.35	270.35	1333.46	748.51	620.95	465.02	581.20	644.09	543.61	143.33	690.15	559.71	377.15
26	E5a_E7a	NovelJunction	0	2.95	0.00	0.00	0.00	0.00	3.07	0.00	0.00	0.00	2.04	0.00	1.39	0.00	0.00	0.00	0.00	1.40	0.00	0.00	4.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	I5_AR1	ActiveIntronRegion	0	0.00	0.00	1.12	0.00	0.00	0.00	2.02	0.00	1.12	0.00	0.00	0.00	0.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	I5_SR3	SilentIntronRegion	0	0.00	0.00	0.00	4.72	0.00	0.00	0.00	0.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.10	3.01	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	0.00	0.00
29	E6_Aa	NovelBoundary	0	2.77	0.00	0.00	0.00	7.37	4.99	4.98	0.00	0.00	3.75	0.00	1.30	0.00	2.24	0.00	0.00	0.00	4.62	8.09	3.72	0.00	2.43	0.00	0.00	0.00	0.00	0.00	1.84	0.00
30	ER6a	ExonRegion	0	1149.57	718.41	421.14	1393.66	1006.85	905.67	1292.12	900.34	664.44	731.11	1180.60	703.52	1112.69	524.97	881.91	484.87	641.00	333.83	1225.62	908.17	549.85	614.16	773.76	631.02	723.94	274.52	928.23	802.83	435.03
31	E6a_E7a	KnownJunction	0	1241.64	654.80	377.59	1360.59	962.92	998.94	1809.70	1219.96	938.45	941.60	1482.11	810.95	1395.61	588.04	1259.50	569.30	726.28	404.04	1601.41	980.07	657.93	651.13	853.60	772.10	808.39	327.91	966.52	927.70	471.07
32	E6a_E8a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	2.71
34	ER7a	ExonRegion	0	1420.52	832.05	312.50	1190.03	854.41	860.63	1317.83	1569.98	908.17	753.44	1303.64	788.44	1403.09	636.37	1056.62	497.33	705.21	367.76	1335.59	986.34	533.53	924.30	801.06	716.36	794.81	352.60	791.14	861.52	492.14
35	E7_Da	NovelBoundary	0	2.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.35	0.00	0.00	0.00	0.00	2.26	0.00	0.00	1.26	4.62	0.00	0.00	1.93	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00
36	E7a_E8a	KnownJunction	0	1337.32	933.83	252.16	1150.50	689.55	693.84	1060.42	1416.24	861.96	705.60	1220.05	746.46	1339.34	574.74	1086.69	527.84	680.46	395.57	1770.68	829.39	463.68	902.34	662.21	665.15	664.05	357.09	832.78	817.17	546.90
37	I7_SR1	SilentIntronRegion	0	2.67	0.50	0.52	0.00	0.00	0.00	0.00	0.57	0.35	0.45	0.37	0.00	0.00	1.27	0.00	0.00	0.70	1.80	0.00	0.86	0.67	0.00	0.00	1.01	0.89	0.25	0.00	0.25	0.31
38	E8_Aa	NovelBoundary	0	3.01	4.65	1.54	0.00	0.00	1.96	0.00	0.00	0.00	0.00	2.56	0.00	0.00	2.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.24	6.10	0.00	1.80	0.00	4.00	0.00
39	ER8a	ExonRegion	0	1402.95	850.83	316.44	975.05	766.25	856.39	1277.28	1655.20	822.96	809.13	1570.65	862.09	1366.44	613.75	1031.60	485.60	729.20	363.87	1412.47	919.89	498.64	919.05	802.16	671.13	774.01	452.32	914.15	913.86	535.18
40	E8_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35	0.00	0.00	0.00	3.69	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	E8a_E9a	KnownJunction	0	1230.08	862.47	350.85	1053.44	897.49	893.12	1366.40	1577.23	857.94	724.13	1303.00	835.50	1328.04	596.74	1312.72	434.67	837.05	325.31	1011.56	885.46	528.86	810.55	768.44	624.41	708.34	472.79	743.72	897.33	531.09
42	E9_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	1.20	0.00	0.86	0.00	3.37	2.57	0.00	8.09	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00
43	ER9a	ExonRegion	0	1357.36	773.05	329.94	1210.24	932.95	725.35	1227.68	1780.02	829.53	734.67	1211.36	806.31	1303.42	628.49	1130.68	421.42	867.29	308.03	1097.99	872.77	414.56	920.73	757.70	564.68	692.90	485.09	798.93	976.78	538.20
44	E9_Da	NovelBoundary	0	0.00	3.78	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	3.68	0.00	7.65	0.00	0.00	0.00	0.00	1.52	0.00	0.00	2.51	0.00	0.00	0.00	0.00	0.00
45	E9a_E10a	KnownJunction	0	1596.62	934.41	344.55	1370.94	1107.20	691.73	1105.90	2059.51	836.44	610.25	1173.04	707.43	1340.65	562.49	1449.65	473.30	825.87	253.14	1084.39	886.29	407.92	972.49	687.92	634.22	640.30	433.52	636.53	778.62	627.26
46	E9a_E11a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	I9_AR1	ActiveIntronRegion	0	1.18	1.78	1.38	0.99	0.00	2.08	0.00	0.51	0.93	1.73	1.64	0.68	0.80	1.68	0.76	0.34	0.41	2.17	0.88	0.38	0.74	0.25	0.25	1.48	0.59	0.43	0.67	1.35	0.28
48	I9_SR1	SilentIntronRegion	0	2.96	2.91	0.88	2.10	1.42	0.40	0.59	0.32	4.76	1.60	1.43	0.79	0.23	1.27	3.67	1.92	0.61	1.08	2.24	1.19	1.62	0.32	0.32	1.61	1.59	1.32	1.00	2.20	0.55
49	E10_Aa	NovelBoundary	0	3.01	4.36	0.00	0.00	0.00	1.96	0.00	1.94	1.34	5.71	0.00	1.87	0.00	1.93	0.00	0.00	2.50	4.62	8.09	0.00	1.52	0.00	2.51	8.37	5.34	0.00	0.00	0.00	0.00
50	ER10a	ExonRegion	0	1447.13	921.49	358.04	1168.93	1182.86	859.83	1377.81	2151.92	930.04	718.24	1228.44	766.17	1531.52	606.22	1288.31	478.16	771.94	343.71	1331.94	886.96	545.11	951.63	715.34	612.37	686.04	544.68	648.25	909.39	652.66
51	E10_Da	NovelBoundary	0	5.49	0.00	0.00	0.00	11.05	1.92	2.12	0.00	4.60	0.00	0.00	0.00	0.00	2.48	16.74	0.00	2.16	0.00	0.00	0.00	3.29	0.00	0.00	0.00	1.48	0.00	0.00	0.00	1.68
52	E10a_E11a	KnownJunction	0	1264.35	730.81	305.73	1264.39	1122.68	678.91	1378.53	1857.11	900.21	547.85	1029.83	719.50	1426.63	547.00	1239.37	358.55	681.09	336.23	1318.40	864.54	458.14	822.17	608.38	488.39	538.23	552.82	554.72	959.02	553.04
53	I10	Intron	0	3.68	4.06	0.98	1.30	1.55	3.42	0.36	0.83	1.93	2.41	2.64	2.81	0.73	3.48	4.08	5.07	3.64	2.58	2.31	0.50	2.06	0.82	0.82	2.82	2.00	0.78	0.00	1.77	0.60
54	I10_SR1	SilentIntronRegion	0	3.90	3.89	0.97	0.76	1.29	3.84	0.43	0.88	1.91	2.31	2.50	2.98	0.85	3.46	3.99	5.53	3.53	2.67	2.50	0.58	2.01	0.76	0.76	2.82	2.02	0.79	0.00	1.81	0.71
55	I10_AR1	ActiveIntronRegion	0	2.42	5.12	1.05	4.54	3.09	0.96	0.00	0.58	2.03	3.04	3.50	1.83	0.00	3.58	4.66	2.36	4.36	2.09	1.24	0.00	2.44	1.14	1.15	2.86	1.92	0.72	0.00	1.55	0.00
56	E11_Aa	NovelBoundary	0	5.13	4.17	0.00	21.57	0.00	1.50	0.00	10.15	3.29	0.00	0.00	1.87	0.00	3.46	0.00	0.00	5.24	0.00	0.00	0.00	3.57	2.48	0.00	2.63	0.00	0.00	0.00	1.75	0.00
57	ER11a	ExonRegion	0	552.08	365.35	159.70	512.86	417.06	280.38	565.12	803.25	516.55	282.33	412.72	313.30	617.02	247.10	694.27	178.00	326.49	144.17	462.22	422.38	192.93	442.25	273.43	249.10	222.18	244.51	229.95	405.45	234.33
58	IG44_AR1	ActiveIntergenicRegion	0	27.59	41.24	10.05	51.71	67.93	50.06	39.79	19.59	71.48	17.85	22.67	14.61	47.43	17.85	90.74	20.47	12.81	25.57	56.43	80.70	37.96	14.25	9.62	34.72	14.97	2.70	17.61	11.76	11.24
59	IG44_SR1	SilentIntergenicRegion	0	0.00	0.00	1.40	0.00	0.00	0.95	0.00	0.00	3.23	1.71	0.00	0.00	0.08	0.00	0.00	10.76	0.00	0.00	1.70	0.00	0.00	0.00	0.00	1.34	0.80	0.00	0.00	0.00	0.00
60	IG44_AR3	ActiveIntergenicRegion	0	1.53	0.88	0.27	1.71	1.16	2.51	0.00	0.44	3.33	2.75	2.27	0.98	1.59	1.08	1.67	2.73	3.67	0.31	4.56	1.09	1.13	0.29	0.43	1.36	0.68	1.00	1.31	2.84	0.27
61	IG44_SR4	SilentIntergenicRegion	0	1.20	2.41	0.00	0.00	1.82	1.54	1.51	0.34	1.36	2.97	1.78	2.42	0.36	0.51	2.91	2.19	3.34	1.08	2.39	0.00	0.80	0.00	0.68	2.01	1.34	0.00	3.42	3.05	0.00