Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C1RL	Gene	0	53.03	105.21	54.77	22.28	19.31	143.48	30.61	14.16	91.32	80.74	58.96	60.20	64.79	73.60	30.33	61.12	108.14	93.48	50.57	26.57	66.10	90.33	43.87	123.15	72.63	70.75	76.37	15.05	73.51
2	396661	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	266542	Transcript	0	44.04	124.95	43.18	19.85	19.95	155.28	28.38	10.04	135.49	79.28	62.58	53.39	76.60	66.16	31.89	64.02	98.95	78.16	55.68	22.83	70.58	82.79	38.68	137.45	72.21	57.12	96.84	11.33	80.61
4	ER1a	ExonRegion	0	74.85	63.09	50.24	16.62	25.47	119.66	25.59	8.26	30.72	63.13	59.18	45.37	43.19	53.93	19.35	69.65	48.32	102.03	29.62	17.66	39.48	179.64	46.81	47.94	63.20	83.55	46.45	5.67	77.45
5	E1_Da	NovelBoundary	0	0.00	0.00	1.00	0.00	0.00	5.87	0.00	0.00	1.34	1.84	0.00	0.00	0.00	0.00	0.00	0.00	4.25	5.39	0.00	3.39	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	E1a_E2a	KnownJunction	0	20.70	37.71	14.20	0.00	0.00	13.16	5.49	2.14	9.26	10.39	4.21	15.60	23.76	20.89	7.97	3.82	31.78	33.01	0.00	28.86	20.74	20.03	4.38	30.45	9.47	20.90	2.04	0.00	25.16
7	E1a_E3a	NovelJunction	0	0.00	0.00	2.72	0.00	0.00	1.73	0.00	0.00	3.50	0.00	5.25	0.00	2.93	1.09	0.00	0.00	0.00	0.00	0.00	0.00	6.14	2.14	0.00	2.45	0.00	0.00	0.00	0.00	0.00
8	E2_Aa	NovelBoundary	0	3.01	0.00	10.31	19.63	6.04	13.28	4.63	0.00	8.47	14.82	9.27	5.90	4.08	9.82	15.95	17.52	11.79	18.49	24.28	7.53	5.09	1.85	0.00	5.08	6.63	1.85	0.00	3.41	0.00
9	ER2a	ExonRegion	0	90.34	60.02	23.81	33.50	10.96	101.02	36.91	30.88	36.86	76.21	51.12	52.12	54.59	77.11	40.45	80.67	76.33	100.07	49.69	48.13	48.52	129.60	47.54	76.50	58.57	66.11	39.53	15.15	62.72
10	E2_Da	NovelBoundary	0	5.78	3.97	1.25	31.71	0.00	5.18	2.46	6.82	0.00	9.03	1.49	0.00	4.62	4.36	9.97	7.65	10.17	13.87	0.00	7.69	1.60	4.62	0.00	3.05	1.59	4.81	0.00	2.29	1.78
11	E2a_E3a	KnownJunction	0	55.09	29.47	61.12	60.39	34.34	66.45	56.41	10.85	19.98	69.35	42.14	60.30	47.99	86.81	9.97	64.18	77.50	69.99	80.92	59.13	36.58	61.99	54.72	71.12	50.12	43.64	99.49	18.83	42.82
12	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	I2	Intron	0	10.93	6.81	2.45	6.00	2.30	8.38	3.74	2.65	7.47	8.31	4.05	4.37	1.22	5.70	5.73	8.04	16.40	6.20	7.85	5.55	5.48	1.60	0.76	5.34	2.73	2.51	1.25	1.53	1.38
14	I2_AR1	ActiveIntronRegion	1	11.62	4.42	2.44	17.20	2.55	6.31	9.04	7.30	7.89	7.08	3.72	4.57	2.36	4.72	9.71	9.43	12.30	8.47	10.00	9.61	5.36	3.01	2.07	6.51	1.79	1.31	2.29	1.19	1.89
15	I2_SR1	SilentIntronRegion	0	8.18	5.65	2.34	1.24	3.18	8.61	1.48	0.66	5.88	7.80	4.86	3.67	0.95	6.37	2.53	7.04	13.50	6.49	7.17	4.16	6.33	0.78	0.28	5.25	2.25	1.02	1.19	1.89	0.91
16	I2_AR2	ActiveIntronRegion	0	11.78	9.22	3.05	6.54	0.75	8.26	2.70	1.84	8.35	10.10	3.67	5.95	0.78	4.24	3.11	8.42	20.07	3.14	7.88	2.94	6.15	1.11	0.52	6.23	4.09	3.62	0.00	1.03	2.28
17	I2_AR3	ActiveIntronRegion	0	10.88	23.85	3.37	7.31	0.00	11.51	4.03	1.70	13.07	13.80	4.23	8.80	0.00	7.12	1.66	8.62	29.79	5.46	2.51	8.43	2.54	1.74	0.00	8.29	6.30	16.94	0.00	2.35	2.49
18	I2_SR2	SilentIntronRegion	0	14.32	8.62	2.10	0.13	1.89	10.44	2.09	1.19	8.70	8.88	3.34	3.77	0.75	6.88	8.99	7.78	22.67	5.52	6.82	5.03	3.81	1.74	0.23	3.17	3.37	4.69	1.18	1.70	0.78
19	E3_Aa	NovelBoundary	0	17.93	0.00	3.99	0.00	12.23	5.56	2.69	2.54	12.09	13.54	1.42	2.89	2.93	4.10	18.14	11.02	23.66	4.62	16.18	4.13	2.05	0.00	0.00	2.99	0.00	2.19	7.06	0.00	3.70
20	ER3a	ExonRegion	0	70.04	73.75	95.18	53.50	32.83	125.83	45.36	23.95	33.33	78.73	53.72	64.72	60.23	97.86	31.81	49.47	108.76	92.62	55.69	35.95	54.96	78.41	45.33	96.77	66.34	58.18	45.35	21.27	54.46
21	E3_Da	NovelBoundary	0	24.36	8.24	3.51	0.00	0.00	5.06	10.30	4.73	14.89	6.99	4.30	5.09	2.61	10.92	15.95	17.06	23.25	14.64	8.09	14.47	7.38	2.48	0.00	14.59	5.04	2.19	0.00	3.82	1.42
22	E3a_E4a	KnownJunction	1	47.07	78.34	46.77	18.33	14.74	109.46	88.63	6.42	17.02	76.90	53.30	81.63	63.91	76.88	0.00	47.74	120.40	93.50	48.55	18.19	62.17	59.75	50.33	106.59	39.48	57.16	66.40	4.40	66.95
23	E3a_E5a	NovelJunction	0	0.00	0.00	1.27	0.00	0.00	5.52	0.00	0.00	0.00	0.00	2.91	0.00	0.00	0.00	0.00	0.00	1.13	5.39	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E3a_E6a	NovelJunction	0	0.00	0.00	1.00	0.00	0.00	0.00	0.00	1.84	0.00	1.68	1.58	0.00	3.06	3.41	0.00	0.00	2.21	0.00	0.00	0.00	3.37	0.00	2.51	0.00	1.63	7.55	2.48	0.00	1.35
25	I3	Intron	0	5.18	2.16	1.35	1.92	1.31	3.32	2.16	1.73	3.69	4.26	1.28	0.33	0.78	2.73	1.24	2.33	4.21	2.63	4.29	1.27	3.06	0.48	0.00	2.31	1.34	1.90	1.47	0.66	0.00
26	I3_AR1	ActiveIntronRegion	0	10.76	2.31	2.40	5.15	0.00	2.96	1.45	4.63	4.03	6.22	0.43	0.89	1.40	5.04	3.31	4.46	2.14	4.84	4.59	3.40	1.54	0.65	0.00	3.09	2.57	5.08	1.32	0.59	0.00
27	E4_Aa	NovelBoundary	0	8.02	19.20	0.95	0.00	0.00	14.89	7.84	5.03	18.12	5.07	4.14	1.45	0.00	5.21	8.37	21.80	34.28	13.87	8.09	7.28	1.68	2.48	0.00	16.21	1.52	2.15	0.00	2.29	3.10
28	ER4a	ExonRegion	0	69.22	95.29	49.15	21.13	18.70	212.38	58.12	25.98	49.86	85.30	59.43	87.07	73.96	86.52	43.03	65.56	118.19	148.89	65.95	47.34	86.13	99.79	61.50	116.59	80.38	76.91	68.07	17.09	81.72
29	E4_Da	NovelBoundary	0	2.89	0.00	3.69	0.00	0.00	9.63	7.90	0.00	11.79	3.28	4.75	6.33	1.43	5.21	24.91	6.12	36.40	15.93	0.00	0.00	3.89	2.29	0.00	13.34	1.86	0.00	2.53	2.02	2.91
30	E4a_E5a	KnownJunction	0	55.80	43.92	48.29	19.63	7.37	114.83	27.58	4.43	25.76	42.58	58.97	72.47	57.77	68.33	39.07	49.80	95.66	94.40	40.46	24.73	42.60	67.82	55.50	93.67	46.79	41.67	38.71	14.74	50.48
31	I4	Intron	0	8.59	5.87	3.65	0.00	0.00	9.01	3.67	3.35	10.02	5.26	1.30	2.92	2.36	5.77	15.76	9.69	8.16	8.66	10.47	6.02	2.08	3.94	0.66	11.75	4.69	1.72	0.00	1.78	0.98
32	I4_SR1	SilentIntronRegion	0	9.60	6.86	4.15	0.00	0.00	11.37	5.17	4.34	13.78	6.31	1.90	2.78	3.30	6.22	18.08	11.14	9.52	10.65	11.86	6.48	2.33	4.15	1.00	13.94	6.01	2.10	0.00	2.25	1.47
33	I4_AR1	ActiveIntronRegion	0	6.94	4.00	2.83	0.00	0.00	4.69	0.83	1.52	2.93	3.36	0.16	3.33	0.54	5.11	11.81	7.21	5.79	5.04	8.17	5.38	1.67	3.68	0.00	7.90	2.24	1.02	0.00	0.92	0.03
34	E5_Aa	NovelBoundary	0	14.45	0.00	8.87	20.06	0.00	13.01	2.80	2.24	8.01	5.63	0.00	4.40	3.25	5.07	7.77	12.85	13.75	4.62	8.09	7.28	12.71	6.56	0.00	27.10	3.56	6.01	0.00	6.60	3.24
35	ER5a	ExonRegion	0	69.19	75.95	76.79	29.25	8.30	165.73	43.86	8.30	36.13	70.11	67.71	67.48	64.76	80.52	24.42	43.02	101.49	106.44	29.15	37.36	71.17	97.44	53.38	109.42	62.20	79.63	54.16	12.78	64.89
36	E5_Da	NovelBoundary	0	22.36	24.24	26.98	71.83	13.12	67.22	30.67	19.46	53.11	38.91	26.00	21.84	17.64	27.41	26.71	29.76	89.56	29.28	56.65	32.91	19.93	31.21	11.97	22.61	30.69	28.62	32.25	11.95	31.59
37	E5a_E6a	KnownJunction	0	69.48	71.84	102.95	36.45	20.34	267.35	51.04	6.47	42.30	102.42	45.65	69.91	55.63	74.84	24.12	52.17	113.56	124.83	56.65	38.46	94.54	124.85	67.57	71.42	85.92	111.19	63.71	12.09	100.92
38	I5	Intron	0	15.30	24.16	5.58	5.52	3.51	20.76	11.08	6.34	28.01	18.09	6.36	11.66	10.41	11.25	11.70	12.31	38.57	19.15	19.53	8.13	12.60	10.00	5.39	31.49	16.96	13.48	6.21	5.44	11.65
39	I5_SR1	SilentIntronRegion	0	17.14	36.49	5.06	8.68	4.14	18.98	10.01	6.02	25.94	20.81	11.10	12.55	14.11	13.09	15.80	15.12	40.51	20.15	32.90	12.07	12.44	13.97	6.13	41.94	19.05	10.10	9.76	5.33	14.10
40	I5_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.54	0.00	2.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	I5_SR2	SilentIntronRegion	0	14.70	17.73	6.69	3.24	3.42	24.94	11.89	6.66	32.15	17.57	3.19	11.68	8.70	11.23	9.84	8.94	42.44	19.12	10.78	5.45	14.24	6.73	4.46	27.04	17.09	17.22	3.25	5.72	9.09
42	I5_AR2	ActiveIntronRegion	0	18.58	8.49	5.41	5.08	2.77	18.71	19.63	10.36	32.83	17.55	2.74	13.98	6.39	8.14	7.16	25.27	28.70	20.77	9.24	5.97	11.65	13.92	10.42	19.21	15.23	18.79	8.11	7.97	21.12
43	E6_Aa	NovelBoundary	0	7.26	18.13	15.55	0.00	0.00	30.31	20.88	6.57	76.22	20.01	7.31	13.49	27.00	11.74	15.95	87.97	83.33	37.50	0.00	2.98	41.19	12.83	21.92	30.69	19.51	35.96	20.43	14.65	31.53
44	ER6a	ExonRegion	0	45.64	86.58	78.03	14.78	11.48	111.13	24.86	12.12	49.08	72.99	43.60	70.38	49.60	71.66	19.46	38.16	128.09	113.49	41.51	20.37	61.55	68.75	45.13	95.13	64.44	94.39	47.90	20.29	67.69
45	E6_Da	KnownBoundary	0	44.89	227.93	26.38	18.98	13.56	125.39	29.75	6.57	72.87	94.71	61.56	76.11	77.73	90.02	23.92	38.33	120.90	113.79	40.46	58.47	89.09	60.87	59.64	167.66	97.25	160.07	55.91	23.05	66.39
46	E6a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	ER6b	ExonRegion	0	52.27	121.71	55.63	21.93	24.83	161.90	28.91	14.46	102.12	97.77	70.03	64.09	63.64	82.58	32.40	73.43	128.03	95.07	51.67	25.91	71.77	101.01	47.72	159.08	89.61	78.90	93.37	16.16	75.89
48	E6_Ab	KnownBoundary	1	1733.11	1113.77	1909.65	1269.13	1190.32	1333.08	1059.56	1295.70	3072.44	1802.18	937.33	1401.69	1386.06	1598.73	1573.83	1079.86	4223.48	19.14	0.00	1112.88	1715.96	1007.35	918.75	1520.27	1297.61	2015.03	952.75	2180.75	1497.69
49	ER6c	ExonRegion	0	35.79	50.42	41.69	6.68	7.69	43.57	11.52	13.17	72.34	21.19	24.47	22.64	36.20	34.45	31.41	29.38	51.78	18.57	23.61	14.18	32.90	46.79	16.27	46.20	31.57	38.44	34.44	23.32	31.37
50	E6_Db	KnownBoundary	1	405.94	308.21	1126.05	261.20	301.37	397.33	339.34	375.28	1109.75	411.00	274.71	597.97	611.48	623.89	424.35	294.98	2153.08	70.64	64.74	248.51	452.65	298.80	277.67	350.40	324.90	522.09	482.51	648.00	736.00
51	ER6d	ExonRegion	0	35.81	128.18	30.73	17.77	15.06	148.66	27.85	5.62	168.87	60.80	55.13	42.68	89.57	49.75	31.38	54.61	69.87	61.26	59.68	19.75	69.38	64.57	29.64	115.81	54.81	35.34	100.32	6.50	85.33
52	IG45_AR3	ActiveIntergenicRegion	0	0.00	0.71	1.11	0.00	0.22	1.21	0.00	0.41	0.99	1.58	0.79	1.22	0.57	0.30	1.02	1.10	2.71	2.79	0.00	0.61	0.94	0.21	0.00	0.95	0.45	0.35	0.00	0.00	0.00
53	IG45_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	4.98	0.00	0.00	1.84	0.98	1.44	0.00	0.00	0.00	0.91	0.00	0.00	1.13	0.00	0.00	0.00	2.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	IG45_SR2	SilentIntergenicRegion	0	0.51	0.00	0.00	0.00	0.89	0.46	0.00	0.09	0.71	1.39	0.00	0.79	0.00	0.70	0.00	0.00	0.14	0.00	0.00	0.76	1.11	0.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	IG45_SR1	SilentIntergenicRegion	0	2.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.55	0.61	0.00	0.68	0.00	0.00	0.00	0.00	1.49	0.00	0.00	0.24	0.64	0.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	IG45_AR1	ActiveIntergenicRegion	0	12.37	35.58	11.20	16.17	27.21	30.18	4.55	2.08	12.18	50.16	26.83	24.09	18.92	32.73	2.62	43.78	13.04	158.62	14.83	7.48	31.88	38.01	67.52	43.51	56.97	100.79	74.46	11.35	49.41