Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	GABARAPL1	Gene	0	66.20	107.92	32.55	29.17	99.36	127.54	19.26	11.54	49.02	67.60	44.01	44.82	41.57	88.33	73.12	57.91	51.08	100.55	80.09	34.08	61.36	76.36	73.51	218.39	143.27	52.47	114.55	28.47	63.70
2	266458	Transcript	0	79.91	98.90	29.35	28.80	126.93	133.78	14.93	13.06	42.02	76.69	45.72	45.66	29.07	82.32	50.18	73.50	43.54	108.96	76.51	26.48	50.95	81.50	81.68	194.27	156.63	58.87	122.31	23.60	53.46
3	421801	Transcript	0	10.79	6.51	1.09	0.00	4.88	4.56	0.67	0.00	0.37	0.12	0.40	0.99	0.00	3.62	8.60	4.73	2.48	8.94	7.19	2.68	1.91	0.60	1.04	6.44	1.92	1.11	1.22	2.42	0.68
4	ER1a	ExonRegion	0	37.85	22.92	18.64	28.75	112.08	60.02	9.35	2.26	6.77	34.42	8.63	8.85	3.78	20.66	4.58	40.95	12.61	55.02	39.40	7.79	11.83	73.09	59.38	29.53	28.13	31.75	34.26	6.74	18.42
5	E1_Ab	KnownBoundary	0	74.38	46.54	46.91	48.10	188.78	122.58	18.59	5.92	10.29	66.91	20.18	29.55	9.36	42.72	0.00	66.71	33.22	47.65	40.46	8.27	30.40	126.11	105.49	64.42	66.41	53.21	56.80	12.49	41.10
6	ER1b	ExonRegion	0	38.73	47.85	15.14	14.75	72.72	60.16	11.18	6.88	9.57	39.94	16.57	18.86	17.90	42.02	22.36	35.39	22.54	63.80	35.15	21.57	26.82	56.92	56.02	85.25	68.07	30.27	41.81	13.31	35.68
7	E1_Da	NovelBoundary	0	22.83	33.25	20.13	0.00	24.32	21.45	7.38	4.28	11.66	17.06	6.55	11.66	10.92	34.79	0.00	23.33	19.31	0.00	0.00	21.92	16.93	38.65	23.10	55.99	41.52	35.83	16.35	3.68	18.22
8	E1a_E2a	KnownJunction	0	52.14	94.14	47.11	0.00	98.44	69.56	15.22	9.46	21.10	68.59	30.24	39.82	24.77	106.55	85.71	38.63	40.52	73.98	64.74	71.87	41.67	100.01	59.64	154.98	121.69	73.43	72.06	13.48	41.56
9	I1	Intron	0	3.69	3.18	0.46	0.33	2.01	5.32	0.40	0.34	1.02	1.92	0.29	0.96	0.13	2.66	2.99	4.02	2.14	6.62	5.80	1.01	2.83	0.36	0.61	3.57	1.33	0.19	0.56	0.92	0.76
10	I1_AR1	ActiveIntronRegion	0	6.78	5.43	0.56	0.53	3.27	8.60	0.75	0.14	1.44	3.06	0.40	1.45	0.14	4.73	4.90	7.55	4.00	9.92	5.95	1.54	3.03	0.54	0.61	5.84	2.39	0.35	1.16	1.52	1.69
11	I1_SR1	SilentIntronRegion	0	3.17	1.06	0.83	0.00	1.61	4.16	0.33	1.82	0.46	1.58	0.00	0.57	0.00	1.90	1.66	2.04	0.98	6.02	5.26	0.00	5.66	0.00	1.19	2.83	1.04	0.00	0.00	0.80	0.00
12	I1_AR2	ActiveIntronRegion	0	2.13	2.39	0.55	0.00	1.08	1.92	0.00	0.00	0.19	2.61	0.26	0.78	0.36	1.52	0.51	2.94	1.98	4.62	5.65	0.00	2.66	0.40	1.20	3.57	1.20	0.00	0.61	0.90	0.30
13	I1_AR3	ActiveIntronRegion	0	1.08	1.80	0.19	0.00	0.82	3.54	0.23	0.41	1.32	0.57	0.33	0.59	0.07	1.04	2.78	1.11	0.50	3.77	6.26	1.08	2.40	0.30	0.30	1.20	0.16	0.18	0.00	0.37	0.08
14	E2_Aa	NovelBoundary	0	10.62	7.37	0.00	0.00	0.00	3.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.89	0.00	3.82	1.37	4.62	0.00	0.00	1.76	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00
15	ER2a	ExonRegion	0	79.42	83.16	61.46	10.55	120.94	85.96	8.65	14.52	24.43	55.36	22.96	36.93	26.52	106.53	47.36	48.69	34.88	107.27	58.15	54.65	44.47	68.69	62.05	194.80	136.24	42.51	65.59	23.15	53.23
16	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.63	0.00	0.00	0.00	1.02	0.00	0.00	1.40	0.00	16.18	0.00	0.00	0.00	0.00	0.00	1.55	2.19	0.00	0.00	0.00
17	E2a_E3a	KnownJunction	1	64.94	63.31	39.66	9.71	132.04	92.01	10.64	18.31	35.69	58.60	29.23	37.50	51.01	104.76	125.57	72.06	40.22	139.48	72.83	61.28	51.82	70.84	84.27	254.10	149.15	31.80	43.44	41.70	59.99
18	I2_AR1	ActiveIntronRegion	0	1.87	0.00	0.00	0.00	2.47	1.69	0.88	0.00	0.00	0.00	0.00	0.80	0.00	0.00	0.00	0.00	0.00	0.00	2.79	0.00	2.41	0.00	0.00	0.00	1.25	0.58	0.00	0.00	0.00
19	E3_Aa	NovelBoundary	0	0.00	4.85	0.00	0.00	0.00	1.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER3a	ExonRegion	0	102.26	112.65	28.59	36.13	119.98	121.33	22.04	17.28	39.38	101.49	51.25	61.73	57.24	140.43	82.13	73.20	64.76	138.59	75.08	48.35	48.58	98.94	94.29	283.07	195.99	75.37	115.37	44.48	88.08
21	E3_Da	KnownBoundary	0	11.38	12.41	0.00	0.00	0.00	3.91	0.00	0.00	0.00	1.72	0.00	1.87	0.00	8.86	0.00	0.00	4.86	4.62	0.00	0.00	0.00	0.00	2.27	19.44	0.00	0.00	0.00	8.54	0.00
22	E3a_E4a	KnownJunction	0	126.52	137.57	30.42	21.57	156.36	180.06	11.61	23.44	52.56	115.60	71.91	72.59	31.30	121.86	51.62	111.00	54.25	155.27	89.02	32.91	61.69	83.67	100.81	280.30	266.71	82.52	184.13	29.74	65.10
23	ER3b	ExonRegion	0	10.79	6.51	1.09	0.00	4.88	4.56	0.67	0.00	0.37	0.12	0.40	0.99	0.00	3.62	8.60	4.73	2.48	8.94	7.19	2.68	1.91	0.60	1.04	6.44	1.92	1.11	1.22	2.42	0.68
24	E3_Db	NovelBoundary	0	2.77	0.00	0.00	0.00	0.00	1.42	0.00	2.44	0.00	0.00	4.84	1.54	3.28	3.04	0.00	3.67	1.26	9.25	7.87	3.89	0.00	0.00	0.00	9.15	3.49	1.89	0.00	0.00	5.55
25	I3	Intron	0	5.28	7.14	0.31	0.88	2.41	5.93	0.74	0.45	0.86	3.11	0.81	1.21	0.83	4.04	6.11	6.72	3.49	9.00	19.68	1.53	3.43	0.00	1.11	8.08	2.29	0.29	1.24	1.91	1.15
26	I3_AR1	ActiveIntronRegion	0	5.29	7.16	0.31	0.89	2.41	5.94	0.75	0.45	0.87	3.12	0.81	1.22	0.84	4.05	6.12	6.74	3.50	9.02	19.73	1.53	3.43	0.00	1.12	8.10	2.29	0.29	1.24	1.91	1.15
27	E4_Aa	NovelBoundary	0	10.62	15.90	0.00	0.00	6.48	7.60	0.00	0.00	4.63	2.04	4.84	6.36	1.62	7.93	9.97	3.06	5.24	4.62	24.28	0.00	3.53	2.09	0.00	30.69	5.80	0.00	0.00	0.00	2.05
28	ER4a	ExonRegion	0	75.36	136.21	38.98	36.09	112.34	161.26	23.82	13.48	66.73	80.05	56.63	55.54	52.13	104.45	94.34	68.55	63.75	116.61	101.13	38.72	79.32	87.74	84.83	272.97	175.04	62.33	148.54	34.30	76.85
29	IG22_AR4	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	IG22_AR7	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.60	0.00	0.00	0.78	0.00	2.08	0.00	0.00	2.62	0.35	0.00	0.00	0.00	0.00