Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	EMP1	Gene	0	57.58	136.58	31.42	47.73	53.48	38.46	30.50	12.79	18.19	67.67	24.46	47.20	34.20	142.11	38.34	62.37	76.56	111.54	46.37	27.69	130.03	19.84	331.07	201.85	208.89	69.55	138.78	33.35	60.14
2	256951	Transcript	0	30.16	74.07	29.07	34.50	40.18	20.28	16.84	5.41	9.43	40.97	13.07	30.58	22.94	79.00	21.98	30.26	62.86	69.11	29.01	18.70	76.43	11.78	175.09	100.17	107.84	46.02	87.71	21.43	61.56
3	396301	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	431267	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	IG23_AR4	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.71	0.00	0.00	0.00	0.48	0.00	1.59	0.53	2.90	0.00	0.40	0.00
6	ER1a	ExonRegion	0	21.23	40.30	38.50	78.58	83.98	10.43	8.97	4.58	3.20	33.14	12.03	29.79	17.18	47.84	2.76	25.05	48.94	69.03	22.39	12.56	54.27	7.55	196.72	54.85	96.31	70.12	94.76	33.06	69.84
7	E1a_E2a	KnownJunction	0	7.49	19.87	29.30	0.00	0.00	6.68	10.64	1.94	2.74	14.74	2.97	17.41	14.04	41.30	7.97	2.75	72.05	46.23	16.18	4.13	27.80	4.28	49.69	17.53	24.02	7.90	28.43	8.45	51.80
8	I1_AR3	ActiveIntronRegion	0	3.93	1.04	0.00	0.00	0.39	0.00	0.33	0.00	0.00	0.00	0.31	0.30	0.00	0.58	0.00	0.00	0.24	0.62	0.00	0.00	1.20	0.00	1.87	0.00	0.00	0.22	0.00	0.67	0.00
9	I1_AR4	ActiveIntronRegion	0	2.45	1.04	0.00	2.32	0.00	0.00	0.00	0.00	0.00	0.23	0.00	0.80	0.00	0.15	1.49	0.00	0.48	0.94	0.52	0.00	1.38	0.00	1.17	0.35	0.08	0.25	0.00	0.26	0.00
10	I1_SR5	SilentIntronRegion	0	1.81	0.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.27	0.00	0.15	0.00	0.84	0.00	0.00	0.22	0.36	0.00	0.00	1.84	0.00	3.51	0.00	0.13	0.15	0.00	0.00	0.00
11	I1_AR6	ActiveIntronRegion	0	2.34	1.22	0.00	0.90	0.00	0.00	0.17	0.00	0.00	0.61	0.20	0.61	0.00	0.80	0.00	0.00	0.28	0.32	0.54	0.23	1.76	0.00	2.76	0.72	0.54	0.33	0.00	0.07	0.06
12	E2_Aa	NovelBoundary	0	2.95	4.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	1.42	0.00	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	0.00	2.51	0.00	0.00	0.00	0.00	0.00	0.00
13	ER2a	ExonRegion	0	27.96	53.63	17.80	7.31	14.94	14.35	6.33	2.18	3.84	32.74	6.09	19.91	17.25	66.32	15.50	13.12	41.61	44.24	14.21	24.58	53.11	15.09	93.52	62.93	84.30	40.50	36.59	12.28	62.24
14	E2_Ab	KnownBoundary	0	52.26	62.44	10.17	0.00	0.00	22.56	2.69	4.68	4.54	31.20	6.45	20.63	21.02	94.32	0.00	27.85	27.98	78.60	16.18	36.97	79.70	11.72	95.50	88.05	152.00	73.60	22.51	7.82	63.42
15	ER2b	ExonRegion	0	67.17	105.71	5.81	14.72	6.60	26.67	12.25	13.13	3.47	50.29	12.58	38.92	29.22	145.42	9.38	46.77	52.75	138.87	45.02	34.31	111.65	24.54	246.28	175.44	228.60	115.20	43.70	21.28	63.48
16	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	7.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.59	0.00	0.00	0.00	0.00
17	E2a_E3a	KnownJunction	1	61.05	222.11	6.05	0.00	17.24	47.61	13.56	23.99	6.09	85.84	24.86	60.18	44.45	172.56	7.77	89.43	87.09	181.86	64.74	34.98	207.49	27.13	431.03	189.02	378.55	171.66	135.38	55.80	99.44
18	I2	Intron	0	2.95	0.69	0.05	3.07	0.45	0.34	0.37	0.00	0.00	0.62	0.00	0.42	0.00	1.19	0.00	0.38	0.18	1.00	0.59	0.17	2.79	0.00	0.94	0.59	0.96	0.48	0.45	0.60	0.06
19	I2_AR1	ActiveIntronRegion	0	2.57	0.70	0.00	0.78	1.07	0.60	0.44	0.00	0.00	0.79	0.00	0.14	0.00	0.84	0.00	0.00	0.33	1.26	0.35	0.00	2.65	0.00	0.59	0.23	1.25	0.17	0.00	1.06	0.22
20	I2_SR1	SilentIntronRegion	0	3.08	0.68	0.07	4.18	0.22	0.25	0.20	0.00	0.00	0.52	0.00	0.50	0.00	1.36	0.00	0.56	0.13	0.95	0.72	0.25	2.86	0.00	1.14	0.75	0.87	0.63	0.66	0.42	0.00
21	I2_AR2	ActiveIntronRegion	0	3.33	0.68	0.00	0.00	0.00	0.00	2.98	0.00	0.00	1.17	0.00	1.00	0.00	0.75	0.00	0.00	0.00	0.00	0.00	0.00	2.65	0.00	0.00	0.44	0.45	0.00	0.00	0.31	0.00
22	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.92	0.00	0.00	0.00	1.52	2.48	0.00	0.00	1.82	6.57	0.00	0.00	0.00
23	ER3a	ExonRegion	1	38.32	102.41	32.05	39.35	44.63	30.20	21.11	13.31	4.58	78.60	22.00	76.87	42.13	160.74	11.43	41.35	127.31	143.80	47.82	28.11	102.21	18.16	498.95	131.42	226.22	101.80	165.25	81.03	153.57
24	E3a_E4a	KnownJunction	1	40.58	102.19	58.82	53.49	67.94	36.41	2.75	11.20	9.04	69.82	7.28	78.85	34.26	164.34	0.00	37.25	129.23	129.46	32.37	15.38	71.32	13.08	350.31	135.12	203.82	91.32	109.93	92.38	135.49
25	E4_Aa	NovelBoundary	0	5.49	0.00	1.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER4a	ExonRegion	1	46.94	92.37	56.76	66.49	90.76	24.58	15.50	12.29	2.45	50.98	18.14	43.25	22.71	144.23	7.19	22.09	70.38	103.69	23.56	21.13	80.78	19.77	268.26	147.42	230.84	57.97	71.82	40.43	42.31
27	E4_Da	NovelBoundary	0	2.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
28	E4a_E5a	KnownJunction	0	7.67	69.03	11.14	73.55	34.48	17.11	11.04	2.49	1.13	34.15	6.07	25.99	17.86	97.38	7.18	24.40	50.04	73.98	8.09	10.42	71.84	17.65	214.38	119.09	165.98	23.95	28.58	21.12	31.83
29	E4a_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	E5_Aa	NovelBoundary	0	5.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.70	6.57	0.00	0.00	0.00
31	ER5a	ExonRegion	1	35.09	78.15	12.70	84.10	27.66	22.61	12.15	12.21	2.39	40.24	4.01	31.87	23.52	117.87	13.12	17.45	69.28	104.07	15.48	12.57	61.94	12.95	253.44	116.78	172.08	46.07	39.96	29.04	51.67
32	E5_Ab	KnownBoundary	0	69.13	85.90	11.81	116.26	52.76	30.58	10.18	23.19	4.51	50.49	1.61	43.64	34.20	132.36	18.34	41.16	80.63	94.40	24.28	14.47	63.17	4.38	298.40	143.26	209.43	66.60	56.41	28.62	62.49
33	ER5b	ExonRegion	0	54.65	76.82	15.23	32.20	22.17	23.43	14.85	9.56	1.48	44.76	12.27	36.35	21.63	111.68	14.39	25.84	59.85	101.15	21.05	12.53	72.10	14.45	244.66	123.60	193.93	50.54	48.81	26.84	34.02
34	E5_Da	KnownBoundary	1	39.17	47.21	18.34	32.35	30.36	20.18	9.38	0.00	1.34	76.02	10.06	19.07	9.97	67.73	26.11	16.75	31.13	107.88	8.09	15.38	73.24	18.47	251.17	118.32	238.18	41.71	60.23	33.52	12.45
35	ER5c	ExonRegion	0	62.58	95.66	33.18	30.93	31.12	31.78	23.80	16.58	11.87	53.49	20.24	35.30	23.64	137.06	15.41	58.81	57.82	112.98	26.71	22.86	93.96	24.52	340.04	151.16	206.47	77.87	77.37	32.09	45.11
36	E5_Db	KnownBoundary	0	103.28	189.05	46.82	49.39	95.35	51.45	21.11	12.14	36.88	60.08	33.94	46.29	44.52	211.88	41.06	100.06	103.90	156.04	40.46	48.54	128.03	28.83	460.73	264.26	339.30	143.08	166.69	28.85	74.61
37	ER5d	ExonRegion	0	63.96	182.49	30.67	52.10	61.81	49.64	41.43	12.95	27.96	83.27	31.17	55.22	43.29	160.53	61.68	80.13	88.83	116.92	63.26	33.54	170.54	20.22	360.43	265.39	226.72	65.58	191.09	31.95	62.36
38	IG24_AR1	ActiveIntergenicRegion	0	3.45	14.10	1.99	4.12	3.41	5.06	1.62	0.56	1.72	7.36	3.43	5.57	3.74	11.87	2.61	3.82	4.89	10.41	4.27	1.06	15.53	0.69	30.13	26.40	13.66	2.35	12.00	3.22	4.07
39	IG24_SR1	SilentIntergenicRegion	0	0.99	18.07	0.35	5.30	6.89	0.51	0.34	0.00	1.45	4.72	3.41	2.91	1.05	5.43	1.70	7.23	5.32	3.56	1.74	2.04	9.10	0.00	20.49	19.14	8.68	2.48	6.44	3.59	1.49
40	IG24_AR2	ActiveIntergenicRegion	0	3.52	8.44	1.43	3.20	4.05	1.58	0.84	0.47	2.61	6.19	2.43	4.98	1.32	8.88	3.81	4.23	5.32	5.44	1.76	0.88	7.71	0.35	28.68	24.94	15.34	5.79	3.47	3.79	2.61
41	IG24_SR2	SilentIntergenicRegion	0	0.00	9.62	0.00	0.00	1.96	2.76	1.62	0.00	0.45	2.90	0.96	0.50	0.52	1.99	0.00	1.00	3.60	6.96	0.00	1.11	7.45	0.72	7.99	18.99	5.17	1.89	4.41	1.96	1.61
42	IG24_AR5	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.16	0.00	0.00	0.00	0.00	0.00	0.00	11.92	0.22