Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CCND2	Gene	0	16.19	561.55	1234.45	2.69	332.88	129.90	160.88	340.12	677.12	948.53	1812.09	530.01	924.41	114.30	28.86	155.24	132.05	79.59	42.75	8.84	93.49	64.42	70.43	167.53	107.99	90.00	82.70	14.72	111.62
2	261254	Transcript	1	25.91	440.40	2204.64	2.75	336.90	98.93	313.40	777.47	248.18	842.18	1418.14	597.68	1062.69	127.38	12.99	169.42	145.64	82.46	39.22	11.95	60.84	91.20	74.13	63.78	75.11	90.84	37.99	15.45	65.64
3	IG35_AR2	ActiveIntergenicRegion	0	0.00	0.00	4.48	0.00	23.81	0.29	23.95	2.25	0.70	2.40	0.50	1.02	2.82	0.00	0.00	0.00	0.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.19	0.00	0.00	0.00	0.00
4	IG35_AR6	ActiveIntergenicRegion	0	1.24	2.40	0.97	0.00	0.47	1.06	23.56	1.96	7.36	4.18	17.01	2.44	2.36	0.46	1.06	2.88	0.43	0.74	0.62	0.27	0.00	0.70	0.00	1.66	2.35	2.13	0.71	0.00	0.00
5	IG35_AR7	ActiveIntergenicRegion	0	0.00	1.98	0.12	0.00	0.55	0.00	1.14	1.67	1.31	0.81	0.97	0.83	0.00	0.00	0.00	1.40	1.11	0.00	0.71	0.00	0.00	0.00	0.08	0.73	0.00	0.00	0.00	0.00	0.15
6	IG35_AR9	ActiveIntergenicRegion	0	0.00	1.80	0.94	0.00	0.00	1.62	1.76	0.40	5.04	0.01	0.29	0.93	1.27	0.30	1.19	1.07	0.76	0.21	0.00	0.00	0.46	0.00	0.33	0.74	0.00	0.17	0.20	0.18	0.73
7	ER1a	ExonRegion	1	18.60	198.19	1400.13	2.93	313.00	71.84	288.91	457.55	98.30	526.25	677.98	283.35	451.41	57.74	4.46	113.23	61.05	58.16	15.94	4.15	49.66	53.34	37.23	24.35	35.76	48.44	15.37	8.30	32.43
8	E1a_E2a	KnownJunction	1	16.52	305.30	2528.81	0.00	318.03	86.98	295.74	870.46	164.17	753.65	1061.91	463.12	831.42	115.81	16.74	131.88	104.04	47.52	48.55	22.41	62.09	91.11	50.09	47.07	50.92	60.21	15.65	8.63	41.66
9	I1_SR1	SilentIntronRegion	0	0.00	0.00	3.41	0.00	0.64	0.27	0.93	3.51	0.22	1.02	0.78	0.65	1.83	0.24	0.00	0.33	0.00	0.13	0.21	0.36	0.00	0.00	0.00	0.28	0.19	0.00	0.00	0.00	0.00
10	E2_Aa	NovelBoundary	0	0.00	0.00	6.65	0.00	0.00	0.00	0.00	0.00	5.79	3.99	3.10	1.54	1.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	1	29.58	439.36	2313.27	1.69	298.55	99.07	466.19	1135.99	216.87	977.39	1400.11	629.49	1109.20	137.50	13.59	190.72	129.35	101.70	38.60	11.20	64.32	111.66	78.17	59.51	79.73	93.46	22.63	18.26	59.73
12	E2_Da	NovelBoundary	0	0.00	7.47	51.47	0.00	0.00	6.22	25.63	30.66	14.80	8.63	12.05	8.52	15.95	0.00	0.00	6.50	3.96	0.00	0.00	0.00	0.00	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00
13	E2a_E3a	KnownJunction	1	26.43	407.97	2022.34	0.00	221.35	121.16	402.96	1132.67	262.65	831.59	1391.10	625.68	1155.66	136.57	0.00	207.31	156.35	103.26	48.55	22.41	52.26	122.13	62.55	56.29	78.01	52.14	45.22	10.78	61.17
14	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	0.00	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	I2_AR1	ActiveIntronRegion	0	0.38	2.82	18.81	0.00	3.44	1.45	11.69	16.39	4.63	5.33	9.21	2.69	9.34	0.28	0.00	0.44	0.26	1.02	0.00	0.00	0.25	0.63	0.96	1.51	0.00	0.00	0.00	0.00	0.00
16	E3_Aa	NovelBoundary	0	0.00	13.77	7.92	0.00	6.48	0.00	0.00	0.00	0.00	4.07	4.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER3a	ExonRegion	1	34.75	465.76	2737.98	5.71	344.44	93.00	394.10	1025.84	210.93	888.09	1386.86	682.87	1178.10	146.31	17.33	172.91	165.20	93.66	29.56	11.44	52.96	114.65	81.04	49.23	72.20	100.61	21.75	14.51	55.81
18	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.63	0.00	1.84	0.00	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E3a_E4a	KnownJunction	0	38.52	472.83	3355.19	10.57	635.61	131.64	343.35	877.47	250.47	1062.99	1640.09	831.82	1736.82	162.30	18.34	248.16	192.97	85.53	64.74	8.27	71.48	110.99	92.24	54.37	98.65	129.90	23.06	27.63	80.29
20	E3a_E5a	NovelJunction	0	0.00	0.00	10.84	0.00	0.00	0.00	0.00	4.68	1.43	11.38	7.53	8.58	0.00	0.91	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.31	0.00
21	I3	Intron	0	0.17	1.61	5.96	0.04	0.26	0.45	3.17	5.93	3.04	3.77	2.60	1.50	2.77	0.17	0.16	0.34	0.82	0.27	0.12	0.00	0.45	0.14	0.13	0.56	0.12	0.42	0.00	0.02	0.22
22	I3_SR1	SilentIntronRegion	0	0.00	1.27	2.44	0.00	0.15	0.27	2.72	2.87	1.79	3.76	1.40	0.94	2.24	0.13	0.17	0.30	0.58	0.33	0.05	0.00	0.32	0.08	0.00	0.36	0.09	0.26	0.00	0.00	0.10
23	I3_AR1	ActiveIntronRegion	0	0.00	2.29	11.02	0.00	0.00	0.65	2.35	2.55	3.21	5.20	2.07	3.22	2.53	0.17	0.00	0.81	0.60	0.36	0.00	0.00	0.00	0.17	0.17	1.22	0.27	0.77	0.00	0.00	0.25
24	I3_SR2	SilentIntronRegion	0	0.36	1.87	10.04	0.11	0.37	0.50	4.34	10.99	4.49	4.04	3.85	1.74	4.05	0.22	0.07	0.32	1.07	0.15	0.15	0.00	0.61	0.19	0.30	0.74	0.17	0.50	0.00	0.05	0.27
25	I3_AR2	ActiveIntronRegion	0	0.00	0.00	2.50	0.00	0.00	0.00	6.60	2.85	7.35	1.97	2.38	2.02	0.00	0.00	0.00	1.38	1.00	0.00	0.00	0.00	0.00	0.57	0.00	1.76	0.00	1.57	0.00	0.00	0.00
26	I3_AR3	ActiveIntronRegion	0	0.48	0.73	2.94	0.00	1.10	0.16	2.90	1.85	2.46	2.66	1.94	2.25	0.74	0.09	0.00	0.76	0.26	0.00	0.36	0.00	0.65	0.00	0.00	0.49	0.00	0.80	0.00	0.00	0.76
27	I3_SR3	SilentIntronRegion	0	0.00	3.00	2.30	0.00	0.00	0.32	0.00	1.18	2.30	2.08	3.13	0.59	0.99	0.43	1.28	0.00	1.39	0.00	0.00	0.00	0.33	0.00	0.00	0.50	0.00	0.00	0.00	0.00	0.47
28	I3_SR4	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E4_Aa	NovelBoundary	0	0.00	0.00	4.76	0.00	0.00	3.91	0.00	0.00	2.68	7.51	0.00	5.78	0.00	0.00	0.00	0.00	3.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER4a	ExonRegion	0	29.78	467.91	2839.43	1.23	399.99	69.65	217.86	627.29	126.87	747.66	1347.78	688.96	1074.83	130.19	14.02	152.12	178.23	86.67	36.84	11.54	39.19	85.60	81.54	43.61	65.77	105.85	39.69	16.21	62.82
31	E4_Da	NovelBoundary	0	0.00	0.00	190.23	0.00	0.00	1.46	5.61	6.87	9.44	18.57	8.89	9.19	8.66	1.22	0.00	3.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E4a_E5a	KnownJunction	0	24.48	601.58	1554.94	0.00	167.27	77.92	282.58	599.53	126.99	798.99	1900.98	634.05	1078.03	142.84	0.00	151.24	187.14	85.53	24.28	7.11	54.31	69.77	111.75	47.97	77.10	134.02	64.36	19.59	72.99
33	I4	Intron	0	0.86	4.98	116.13	0.04	1.82	2.44	5.67	10.63	9.71	15.89	13.36	8.48	6.91	1.36	1.09	3.40	3.11	1.09	0.94	0.16	1.33	1.22	0.60	2.39	0.91	1.87	0.29	0.22	0.83
34	I4_AR1	ActiveIntronRegion	0	0.64	0.00	438.99	0.00	1.47	1.24	5.35	10.38	1.80	16.90	11.17	8.02	5.23	0.00	0.00	3.28	1.77	0.58	1.92	0.60	1.23	0.00	2.55	0.68	0.00	2.84	0.00	0.98	2.01
35	I4_SR1	SilentIntronRegion	0	0.86	4.04	399.87	0.36	0.98	2.21	7.60	16.42	5.52	15.19	12.63	9.31	7.29	1.46	0.00	5.85	1.37	1.08	0.80	0.29	1.02	2.09	1.03	1.19	0.38	1.27	0.00	0.33	0.54
36	I4_AR2	ActiveIntronRegion	0	0.44	6.92	646.67	0.00	1.55	4.47	17.44	22.36	7.68	29.46	25.63	15.37	9.97	1.72	0.00	7.67	3.23	1.90	2.03	0.56	2.14	4.34	1.53	3.41	2.05	3.17	0.00	0.17	2.12
37	I4_SR2	SilentIntronRegion	0	0.66	3.17	59.34	0.00	1.78	2.34	2.92	8.19	4.17	13.14	11.60	6.99	4.30	0.90	0.31	2.35	2.03	0.94	0.73	0.00	1.09	0.78	0.33	1.05	0.40	0.65	0.33	0.10	0.18
38	I4_AR3	ActiveIntronRegion	0	0.68	2.30	21.30	0.00	0.00	1.77	2.14	5.87	5.99	9.75	6.99	5.18	6.93	0.80	1.47	3.16	1.83	0.82	0.49	0.00	1.33	0.19	0.38	1.57	0.46	0.55	0.00	0.17	0.00
39	I4_SR3	SilentIntronRegion	0	1.00	4.81	28.73	0.00	1.30	2.74	6.02	11.53	12.07	15.16	13.04	8.72	6.60	1.68	0.92	2.79	3.33	0.82	0.64	0.12	1.55	1.12	0.56	2.56	0.99	2.66	0.53	0.18	1.02
40	I4_AR4	ActiveIntronRegion	0	0.00	10.95	11.22	0.00	0.00	1.10	0.00	8.10	32.88	17.81	12.46	11.71	24.77	2.84	0.00	0.00	4.54	1.09	0.00	0.00	0.00	0.00	0.00	5.31	1.43	3.25	0.00	0.00	1.88
41	I4_AR5	ActiveIntronRegion	0	1.56	9.24	10.11	0.00	0.00	1.15	4.02	7.19	24.64	18.22	11.03	9.82	10.86	2.79	3.36	0.76	7.72	0.57	3.49	0.00	0.52	0.90	0.00	6.53	0.15	2.25	0.00	0.00	1.20
42	I4_AR6	ActiveIntronRegion	0	1.80	8.82	8.74	0.00	4.93	1.03	3.56	4.65	20.60	18.62	12.78	6.69	12.23	1.08	0.00	2.15	4.25	1.62	0.54	0.00	0.96	0.80	0.00	2.91	0.96	3.70	1.54	0.00	1.81
43	I4_SR4	SilentIntronRegion	0	0.49	7.26	7.93	0.00	7.17	1.06	7.55	11.50	18.95	16.53	11.33	7.84	8.43	1.17	2.58	2.77	4.78	1.43	1.17	0.00	1.36	2.04	0.88	6.32	0.82	1.92	0.45	0.20	1.72
44	I4_AR7	ActiveIntronRegion	0	0.07	2.10	12.79	0.00	7.02	3.40	5.34	7.14	17.30	17.48	12.59	14.63	9.92	1.38	5.94	2.29	8.71	2.82	1.53	0.00	2.34	1.62	0.43	4.38	2.66	2.26	0.00	0.00	0.65
45	I4_SR5	SilentIntronRegion	0	0.97	7.73	7.25	0.00	1.20	2.52	4.14	6.96	11.39	17.34	15.50	7.48	7.24	1.57	2.98	3.22	3.98	1.26	1.25	0.27	1.36	0.35	0.09	3.06	1.51	2.09	0.00	0.51	0.39
46	I4_AR8	ActiveIntronRegion	0	1.68	7.01	10.47	0.00	1.02	3.15	4.81	8.38	6.51	15.72	18.55	7.42	4.73	1.34	0.00	4.55	3.19	0.81	0.67	0.58	0.60	1.13	1.13	1.12	1.49	0.64	0.00	0.20	1.96
47	E5_Aa	NovelBoundary	0	2.60	7.37	7.47	0.00	0.00	3.64	7.95	6.72	2.53	23.09	23.92	15.84	4.65	1.31	0.00	0.00	9.07	0.00	0.00	0.00	1.97	0.00	0.00	0.00	0.00	4.08	0.00	2.29	0.00
48	ER5a	ExonRegion	0	14.54	604.74	1089.70	2.66	333.88	139.10	128.90	270.42	776.35	993.02	1956.43	539.78	948.72	117.17	32.42	157.24	136.40	80.07	45.90	9.02	101.28	61.54	72.54	191.61	117.86	92.91	94.13	15.14	123.81
49	IG36_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.79	0.00	0.00	0.00	0.63	1.45	2.28	2.66	1.76	0.19	0.01	0.14	0.86	0.00	0.06	0.00	1.01	0.43	0.45	0.28	0.00	0.00	0.00	0.25	0.00	0.00	0.14