Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CDKN1B	Gene	0	102.59	271.60	86.59	129.14	248.04	232.88	153.12	151.67	212.34	198.32	191.15	76.28	140.88	164.88	237.83	166.75	208.52	145.90	204.06	154.48	153.91	95.47	92.52	337.14	94.69	90.56	134.51	111.52	90.21
2	477087	Transcript	0	0.07	1.27	0.60	0.07	1.28	0.54	0.96	0.29	1.27	0.52	0.57	0.84	0.25	0.43	1.14	0.92	0.18	0.98	0.02	0.00	0.19	0.22	0.22	0.28	0.72	0.75	0.04	0.02	0.00
3	228872	Transcript	0	114.77	245.50	98.60	221.11	263.61	193.66	148.21	161.21	178.89	175.61	164.96	71.78	163.10	165.39	219.11	171.52	189.05	181.62	156.06	167.74	111.08	112.36	126.08	288.48	95.98	89.75	141.06	126.77	114.58
4	396340	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	442489	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	IG9_AR2	ActiveIntergenicRegion	0	3.93	2.82	1.12	2.41	4.60	1.66	7.08	3.97	6.33	1.58	1.42	0.44	2.23	1.08	8.55	4.32	1.80	2.66	4.76	5.27	1.56	1.51	3.49	1.96	1.86	1.97	2.00	4.09	1.37
7	IG9_AR3	ActiveIntergenicRegion	0	2.65	1.41	0.49	0.00	3.97	3.99	1.26	9.56	5.32	0.80	1.71	0.26	1.71	1.71	6.80	5.84	3.87	0.84	4.98	19.47	2.60	10.40	1.10	5.88	7.10	0.95	2.22	1.95	1.85
8	ER1a	ExonRegion	0	0.00	0.21	0.00	0.00	0.00	0.18	0.00	0.00	0.00	0.00	0.00	0.24	0.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.04	0.00	0.00	0.15	0.00	0.00	0.00	0.00
9	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	7.37	7.83	0.00	0.00	4.60	1.76	1.23	0.00	0.00	4.76	0.00	0.00	1.94	0.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.00	0.00	2.16	0.00
10	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	E2_Aa	NovelBoundary	0	0.00	3.49	0.00	0.00	0.00	13.16	21.63	4.98	9.14	9.75	5.69	8.16	5.95	8.71	0.00	13.62	2.84	18.49	0.00	6.45	1.93	4.42	2.51	2.69	14.62	9.91	0.00	0.00	2.71
12	ER2a	ExonRegion	0	0.28	4.85	2.39	0.27	5.12	2.00	3.84	1.17	5.09	2.09	2.28	3.13	0.87	1.74	4.55	3.69	0.70	3.90	0.08	0.00	0.76	0.84	0.86	1.11	2.71	2.98	0.15	0.06	0.00
13	E2_Da	NovelBoundary	0	2.83	0.00	12.93	8.20	0.00	12.81	23.06	0.00	18.09	1.76	7.75	5.60	3.28	1.13	0.00	10.33	15.94	0.00	0.00	0.00	3.45	8.90	2.36	0.00	1.74	3.65	0.00	0.00	3.07
14	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	I2_SR2	SilentIntronRegion	0	0.00	1.81	0.50	0.20	3.96	1.03	0.00	0.00	0.52	0.41	0.00	0.42	0.00	0.31	4.15	0.70	0.00	1.15	0.00	2.11	0.45	0.51	1.10	0.00	0.00	0.44	0.00	1.44	0.38
16	I2_AR2	ActiveIntronRegion	0	43.32	15.63	12.34	74.55	116.39	32.91	33.45	51.93	13.13	43.13	15.26	7.35	20.47	27.31	24.24	43.01	10.36	47.16	16.39	29.41	20.43	65.55	45.99	27.91	20.91	42.65	9.40	35.10	13.52
17	E3_Aa	NovelBoundary	1	24.95	7.17	196.20	37.53	111.12	45.16	22.37	60.57	25.82	23.25	11.33	20.99	42.70	62.99	17.94	20.12	78.06	32.36	8.09	17.70	12.96	43.12	38.02	39.90	16.90	63.77	25.99	52.08	15.38
18	ER3a	ExonRegion	0	97.68	46.09	90.68	78.31	145.95	75.68	61.09	123.41	29.70	110.24	37.31	33.78	58.75	83.83	64.56	81.47	64.55	112.35	54.06	98.29	50.42	106.68	79.64	100.93	44.17	71.32	12.59	72.05	28.66
19	E3_Ab	KnownBoundary	0	58.10	59.24	60.69	197.36	471.15	66.26	61.79	123.62	25.82	91.00	33.50	46.08	61.33	81.09	78.13	56.23	121.32	79.76	64.51	92.71	58.56	42.30	37.77	83.86	53.15	44.85	6.91	19.23	46.98
20	ER3b	ExonRegion	0	141.08	98.38	83.55	163.13	397.89	111.17	104.20	191.90	46.53	161.59	87.43	61.37	91.53	125.47	124.94	94.03	164.23	196.36	118.72	123.45	67.55	99.01	109.89	147.93	76.93	122.06	28.69	139.93	66.45
21	E3_Ac	KnownBoundary	1	194.18	138.45	94.85	147.75	367.25	148.10	130.91	225.04	63.98	224.13	123.88	75.48	101.65	151.46	163.44	126.61	194.01	174.41	121.16	117.02	87.04	118.24	170.45	220.12	94.11	171.70	43.93	265.55	79.96
22	ER3c	ExonRegion	0	157.79	128.92	201.52	137.76	230.27	139.59	127.96	303.40	70.50	208.13	97.60	82.47	107.32	183.86	117.61	131.26	197.73	213.97	120.88	165.68	97.95	157.89	132.58	233.33	107.25	159.09	47.64	159.11	85.55
23	E3_Da	KnownBoundary	1	150.94	132.63	185.42	55.86	194.24	154.85	124.73	196.43	114.04	252.06	153.17	97.98	141.04	192.41	178.39	144.97	353.64	217.18	89.02	169.04	109.06	159.61	223.69	238.36	150.75	238.52	111.97	220.52	138.76
24	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER3d	ExonRegion	0	130.21	166.27	172.40	126.72	285.15	130.62	130.69	283.47	111.81	229.01	114.86	72.95	135.90	181.74	153.68	144.10	227.08	192.74	155.14	170.31	102.34	149.41	154.89	228.43	122.57	181.66	78.55	188.22	105.83
26	E3_Db	NovelBoundary	0	18.40	12.22	5.48	20.28	0.00	3.45	5.84	0.00	2.50	5.63	2.88	0.00	1.59	10.90	0.00	17.52	4.14	0.00	8.09	0.00	3.41	2.48	0.00	2.93	0.00	2.19	0.00	1.71	0.00
27	E3b_E4a	KnownJunction	0	128.71	305.78	165.88	418.44	358.70	97.72	145.04	230.42	139.75	158.42	125.21	79.49	210.84	189.15	152.08	165.08	251.05	268.93	137.35	189.79	51.78	136.32	204.63	180.64	123.09	135.91	158.98	209.07	196.50
28	E3b_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	I3	Intron	0	23.79	7.64	4.68	10.74	41.02	19.51	9.27	11.97	12.00	15.02	6.66	6.22	2.46	11.76	7.80	17.06	18.80	7.55	8.31	5.63	5.71	3.24	1.45	9.68	5.00	6.92	1.28	9.62	2.01
30	I3_AR1	ActiveIntronRegion	0	24.92	8.33	5.16	10.86	45.61	19.76	9.70	12.77	12.86	16.06	7.04	6.61	2.57	12.62	8.74	18.09	20.08	7.98	9.10	6.31	5.74	3.26	1.62	10.27	5.01	7.41	1.44	10.04	2.25
31	I3_SR1	SilentIntronRegion	0	14.96	1.98	0.74	10.07	3.20	18.10	5.97	5.52	5.09	6.57	3.66	3.08	1.62	4.86	0.00	8.83	8.54	4.12	1.79	0.00	5.65	3.20	0.00	4.99	5.15	2.94	0.00	6.37	0.00
32	E4_Aa	NovelBoundary	0	29.43	24.14	5.03	9.49	76.93	21.95	26.09	4.53	8.25	32.96	13.03	6.72	0.00	11.83	15.95	10.40	18.10	23.89	48.55	12.16	4.09	2.38	9.51	43.49	6.67	8.54	7.55	16.04	7.46
33	ER4a	ExonRegion	0	130.37	460.70	154.28	160.65	299.58	163.07	141.46	265.27	161.70	232.70	183.86	86.84	166.33	202.94	151.43	135.14	235.13	174.86	295.82	170.65	119.85	137.88	119.82	292.19	121.11	165.58	85.01	173.30	124.11
34	E4_Da	NovelBoundary	0	21.77	12.12	5.46	10.57	52.91	31.61	7.72	12.99	8.71	10.83	2.85	4.19	3.06	18.30	32.69	13.92	21.86	5.39	8.09	4.13	5.41	4.76	2.02	20.10	0.00	12.27	0.00	9.84	0.00
35	E4a_E5a	KnownJunction	1	74.32	260.21	87.95	64.92	169.77	78.15	54.01	139.69	113.16	173.48	129.64	65.48	90.66	145.46	141.12	66.48	209.83	136.78	194.22	91.47	50.82	61.55	29.01	226.94	96.87	76.73	90.70	113.41	82.70
36	E4a_E5b	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	4.07	0.00	0.00	1.62	0.00	0.00	0.00	0.97	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	2.20	0.00
37	I4	Intron	1	16.71	20.67	3.25	12.30	22.54	28.54	13.84	9.23	13.62	13.98	10.22	5.33	3.24	13.50	20.07	14.56	23.31	12.72	16.27	8.98	10.04	2.28	1.37	20.77	6.88	7.25	2.37	7.07	2.95
38	I4_SR1	SilentIntronRegion	0	3.03	0.00	1.98	0.00	9.38	2.91	7.94	0.43	0.59	3.65	0.70	2.47	0.00	1.81	1.65	1.34	6.25	7.87	6.66	0.00	0.42	1.38	0.00	5.57	2.52	2.13	0.00	1.05	0.00
39	I4_AR1	ActiveIntronRegion	1	31.57	23.49	3.41	18.91	28.63	29.35	23.23	26.17	14.88	15.09	10.95	8.60	1.09	16.84	6.28	25.00	21.06	12.93	25.14	8.89	14.60	5.88	3.05	15.28	11.71	15.21	2.00	10.97	1.29
40	I4_AR2	ActiveIntronRegion	0	22.23	24.31	4.13	18.95	23.19	37.73	17.50	9.57	14.00	16.41	14.93	7.98	4.60	18.82	21.21	18.15	30.01	16.74	15.36	11.55	12.99	2.83	1.54	23.62	8.66	7.42	2.20	10.06	2.60
41	I4_SR2	SilentIntronRegion	1	12.21	24.36	5.27	10.97	43.31	51.44	33.15	4.50	19.60	34.21	16.17	6.91	2.27	19.96	30.03	24.25	39.10	24.26	30.17	12.80	15.14	0.35	0.00	22.47	5.32	6.33	1.42	6.52	2.68
42	I4_AR3	ActiveIntronRegion	1	12.43	21.02	3.08	7.20	28.90	24.27	11.88	9.03	16.66	13.97	7.40	3.07	3.35	9.78	26.29	12.88	22.30	9.87	17.38	8.34	7.66	1.29	1.61	23.50	6.30	7.26	3.92	3.89	4.46
43	I4_AR5	ActiveIntronRegion	0	1.65	3.28	0.00	0.00	0.00	6.77	1.40	1.42	2.16	1.00	0.00	0.00	0.00	0.00	3.88	6.42	2.00	0.63	5.92	3.46	0.66	0.00	0.00	10.26	0.00	0.00	0.00	3.26	1.24
44	I4_AR6	ActiveIntronRegion	0	4.02	3.28	0.00	0.00	0.00	13.40	2.02	1.84	3.37	4.06	0.00	0.70	0.00	0.62	5.60	8.54	2.00	2.73	13.58	5.62	4.28	0.90	0.00	18.42	0.00	0.00	0.00	4.79	3.77
45	I4_SR3	SilentIntronRegion	0	5.19	9.33	0.72	1.55	3.17	7.58	1.08	3.77	5.94	4.34	1.54	0.89	0.00	4.25	8.73	2.23	5.22	5.74	12.50	2.38	4.59	1.89	0.00	8.30	1.55	4.75	0.00	3.67	1.55
46	E5_Aa	NovelBoundary	0	2.89	18.13	0.00	0.00	7.37	9.09	5.72	0.00	14.89	2.04	3.04	2.56	1.97	2.75	0.00	0.00	3.89	4.62	16.18	0.00	0.00	0.00	0.00	10.83	1.67	0.00	0.00	2.29	7.76
47	E5_Ab	NovelBoundary	0	65.12	269.52	81.20	26.75	184.66	71.40	75.75	127.35	95.35	123.75	127.14	62.56	87.29	138.74	71.95	93.33	326.70	130.87	234.46	135.71	29.72	51.44	47.92	208.04	125.85	63.30	128.62	100.51	76.49
48	ER5a	ExonRegion	1	67.59	262.14	86.03	47.04	162.90	76.66	58.59	132.62	86.10	153.67	132.90	66.13	91.88	154.98	82.70	72.38	275.54	99.98	211.81	115.42	43.55	50.84	42.13	206.87	116.54	72.61	122.47	113.56	82.36
49	ER5b	ExonRegion	0	73.49	645.71	87.32	87.02	180.20	289.50	171.82	137.94	354.89	249.15	250.14	103.98	130.13	170.22	187.64	121.77	364.61	145.33	463.65	134.53	291.84	66.25	77.95	341.35	113.76	141.63	151.48	151.48	124.47
50	E5_Da	KnownBoundary	0	28.02	264.09	44.60	109.57	164.17	58.66	36.05	18.56	68.88	90.96	116.42	61.05	48.31	113.22	85.31	79.41	174.63	84.76	113.29	72.20	36.46	16.24	22.65	150.20	34.25	24.38	14.16	52.03	42.26
51	ER5c	ExonRegion	0	38.48	391.91	69.33	80.27	236.30	179.94	108.64	43.28	294.61	144.00	148.47	75.48	90.24	114.46	110.96	78.87	340.69	96.03	249.61	80.95	189.16	18.58	29.21	214.28	52.95	51.62	100.37	61.04	85.60
52	E5_Db	KnownBoundary	0	56.15	1167.38	84.11	236.61	570.33	678.03	353.64	99.68	846.70	369.26	256.94	121.50	146.36	104.82	340.64	160.11	456.98	203.18	833.30	141.08	832.49	33.25	57.52	529.97	121.95	189.90	333.07	144.45	154.90
53	ER5d	ExonRegion	0	54.02	246.70	101.10	186.98	438.77	200.65	138.17	67.75	220.91	164.53	174.98	69.63	105.13	132.06	229.00	171.13	239.66	105.89	202.37	111.19	178.27	51.17	82.48	277.68	76.94	63.55	143.49	127.53	88.19
54	E5_Dc	KnownBoundary	1	41.29	191.67	26.41	191.10	216.49	103.21	236.70	70.07	442.23	140.29	92.40	50.87	122.12	139.05	300.97	144.58	179.06	103.26	242.77	87.74	80.58	34.86	59.05	278.92	59.33	48.45	79.17	61.74	109.54
55	ER5e	ExonRegion	0	117.92	384.62	39.23	166.60	286.17	407.58	238.50	129.80	367.23	258.16	332.35	102.08	219.72	223.18	440.69	268.01	251.55	163.57	276.78	215.15	231.04	94.07	93.97	583.86	120.68	62.02	251.61	99.21	118.58
56	IG10_AR1	ActiveIntergenicRegion	0	0.00	1.97	0.00	0.00	2.99	0.00	1.21	2.76	3.48	2.60	2.38	0.00	0.26	1.72	2.24	0.00	0.40	0.00	3.17	0.00	1.28	0.90	4.34	0.65	0.00	1.57	0.00	0.65	0.00
57	IG10_SR1	SilentIntergenicRegion	0	0.89	13.80	0.00	0.00	7.21	6.95	10.03	4.15	16.45	13.72	10.69	3.19	5.59	5.55	28.85	12.80	7.33	0.00	2.35	1.24	6.64	1.95	5.03	11.17	5.11	2.06	11.96	2.57	0.56
58	IG10_AR2	ActiveIntergenicRegion	0	2.14	9.85	0.00	0.00	13.52	7.07	6.05	2.37	14.61	15.06	11.73	2.47	2.60	3.24	24.80	18.80	5.58	0.00	0.00	2.81	6.32	2.58	7.23	12.91	15.11	3.14	0.00	0.70	1.34
59	IG10_SR2	SilentIntergenicRegion	0	0.79	13.39	0.00	4.66	4.04	4.91	14.60	1.05	20.30	9.80	9.09	3.81	7.66	4.21	34.71	11.34	3.72	2.54	2.54	1.79	6.87	1.63	5.24	11.94	4.10	2.98	5.01	2.82	1.08
60	IG10_AR3	ActiveIntergenicRegion	0	0.00	13.14	0.00	14.63	0.00	11.00	8.06	3.68	15.35	5.29	11.31	3.09	6.93	4.54	30.80	12.65	7.01	0.00	4.53	0.00	9.51	0.00	2.41	20.44	5.72	0.00	13.43	0.82	0.00
61	IG10_AR4	ActiveIntergenicRegion	0	1.68	0.00	1.27	25.31	3.83	0.00	9.91	1.44	1.70	0.48	0.93	1.46	1.16	1.41	6.46	10.49	9.32	0.76	2.51	6.05	0.56	0.00	1.42	1.74	1.68	1.85	0.00	2.09	1.31