Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	FOXM1	Gene	0	102.36	188.70	110.55	129.59	252.00	132.66	42.40	98.60	130.96	188.62	140.64	173.59	233.97	141.36	67.34	65.23	69.32	229.86	255.62	46.66	187.23	113.80	338.26	108.75	94.33	225.39	181.29	414.79	72.65
2	342628	Transcript	0	20.49	15.43	6.46	6.53	13.80	14.78	7.49	8.06	16.72	15.93	10.49	9.06	12.56	28.09	6.29	4.18	7.15	18.62	50.39	4.84	10.42	1.65	26.06	10.94	10.98	12.14	17.31	7.02	4.28
3	359843	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	361953	Transcript	0	83.52	121.38	53.04	107.63	318.76	107.70	15.96	72.06	45.01	118.28	70.39	205.66	206.89	67.47	24.52	28.23	24.74	117.77	145.44	25.80	124.18	109.15	114.11	48.27	15.23	132.48	136.72	155.78	53.61
5	ER1a	ExonRegion	0	5.47	8.17	13.72	22.81	130.98	8.85	2.39	6.44	1.46	16.64	7.01	6.37	14.32	5.85	2.57	8.86	1.00	24.27	11.52	1.43	10.98	15.77	36.28	1.61	5.36	13.65	9.78	26.99	8.16
6	E1a_E2a	KnownJunction	0	16.69	16.00	13.65	19.84	87.54	21.33	9.73	12.79	4.23	43.54	47.74	29.07	45.28	20.30	0.00	24.40	4.88	56.12	64.74	3.80	45.69	13.66	84.81	15.49	12.88	66.65	43.39	82.13	20.37
7	I1_SR1	SilentIntronRegion	0	0.54	0.02	0.00	1.81	1.85	0.75	1.53	0.47	0.89	0.00	0.01	0.30	0.33	0.00	3.57	0.00	0.19	1.33	0.61	0.35	0.40	1.14	0.23	0.01	0.00	3.30	0.00	1.44	0.00
8	I1_AR1	ActiveIntronRegion	0	1.69	7.31	0.99	8.50	20.27	3.44	1.44	2.18	6.27	1.71	2.45	3.68	1.58	1.72	2.80	2.94	2.07	3.26	2.84	3.79	3.61	2.82	1.43	2.55	1.13	4.79	3.62	1.93	0.27
9	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.68	0.00	0.00	0.00	0.00	0.00	0.00	2.11	1.42
10	ER2a	ExonRegion	0	118.29	170.75	72.29	95.85	207.85	135.94	36.44	111.70	82.90	206.51	157.69	153.66	181.81	160.43	27.01	73.29	54.86	250.67	267.38	59.80	178.08	126.36	345.20	78.46	91.11	196.29	142.10	344.05	59.38
11	E2_Da	NovelBoundary	0	5.72	0.00	1.15	0.00	0.00	6.91	0.00	0.00	0.00	0.00	1.20	2.95	0.00	0.00	0.00	0.00	2.43	0.00	16.18	0.00	0.00	0.00	0.00	2.69	5.04	0.00	0.00	0.00	0.00
12	E2a_E3a	KnownJunction	0	70.13	104.90	84.66	168.46	176.55	90.28	44.28	66.84	82.40	154.79	95.82	157.83	139.13	152.44	9.97	67.47	68.00	126.50	129.48	39.61	142.87	148.67	252.40	32.90	41.56	147.58	122.60	288.46	40.67
13	E2a_E4a	NovelJunction	0	2.30	0.00	1.22	0.00	0.00	3.57	0.00	0.00	5.51	0.00	5.95	6.48	5.10	3.37	0.00	3.29	1.19	0.00	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	0.00	2.29	0.00
14	I2_SR2	SilentIntronRegion	0	2.14	0.00	0.28	0.00	0.00	1.84	1.01	0.00	1.31	1.45	0.20	0.21	1.19	0.30	1.54	0.41	0.75	0.00	2.14	2.17	2.14	0.00	0.00	0.36	0.48	0.79	1.23	1.36	0.00
15	E3_Aa	NovelBoundary	0	0.00	0.00	4.19	0.00	0.00	0.00	0.00	0.00	0.00	4.07	0.00	0.00	0.00	0.00	0.00	0.00	4.68	0.00	0.00	0.00	5.70	0.00	0.00	0.00	0.00	0.00	0.00	11.28	3.40
16	ER3a	ExonRegion	0	110.36	187.82	138.35	151.35	275.23	155.32	52.58	118.63	88.39	215.69	189.02	243.87	207.34	182.49	31.43	72.33	77.77	289.58	282.60	53.74	203.94	160.80	463.90	81.19	90.40	238.37	177.92	498.98	63.98
17	E3_Da	NovelBoundary	0	10.74	0.00	0.97	0.00	0.00	1.88	0.00	0.00	2.53	0.00	0.00	1.30	0.00	1.37	0.00	0.00	3.22	0.00	16.18	0.00	12.03	0.00	0.00	0.00	1.70	0.00	0.00	6.38	0.00
18	E3a_E4a	KnownJunction	0	148.11	245.48	188.13	254.73	334.83	219.69	62.36	138.60	129.79	332.59	201.07	327.04	270.20	220.24	59.20	70.15	97.51	372.83	388.21	59.13	255.82	203.22	514.56	99.11	142.30	305.51	214.00	716.43	60.12
19	I3	Intron	0	5.64	2.27	0.43	3.22	2.51	3.17	1.68	0.83	2.63	2.32	0.92	0.87	0.95	1.22	4.02	0.95	3.64	3.25	12.50	0.66	3.75	0.00	0.93	1.52	1.01	1.11	1.41	3.45	0.77
20	I3_SR1	SilentIntronRegion	0	5.68	2.29	0.43	3.24	2.52	3.19	1.69	0.83	2.65	2.33	0.92	0.88	0.96	1.23	4.05	0.96	3.67	3.28	12.60	0.66	3.78	0.00	0.94	1.53	1.02	1.12	1.42	3.46	0.78
21	E4_Aa	NovelBoundary	1	13.45	0.00	2.14	0.00	38.61	6.94	2.92	2.09	16.08	8.59	1.42	4.19	0.00	4.43	0.00	3.21	12.29	4.62	24.28	3.56	1.80	0.00	0.00	0.00	3.26	10.08	0.00	19.77	0.00
22	ER4a	ExonRegion	0	149.36	247.79	164.80	185.75	314.82	206.92	61.18	136.16	122.86	271.81	233.11	325.84	285.25	220.08	41.80	78.25	96.14	343.97	326.24	59.70	266.85	192.30	507.58	133.92	130.66	335.89	248.30	662.94	86.35
23	E4_Da	NovelBoundary	0	11.33	8.14	1.17	0.00	0.00	6.68	2.40	12.84	5.54	1.96	0.00	11.90	4.52	5.63	0.00	7.34	3.60	9.25	56.42	6.86	12.55	4.81	4.43	3.05	1.82	14.76	12.82	7.55	1.98
24	E4a_E5a	KnownJunction	0	85.23	238.30	102.57	167.81	247.88	204.88	32.50	85.85	106.95	217.98	138.69	228.49	207.24	170.32	54.41	77.49	71.13	350.23	339.88	47.72	245.44	131.61	458.81	63.17	78.95	279.20	145.91	497.75	88.11
25	E4a_E6a	NovelJunction	0	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.81	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	2.22	0.00	0.00	0.00	0.00	0.00	1.32
26	E4a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	2.95	0.00	0.00	1.67	0.00	0.00	0.00	4.52	1.02	0.00	0.00	1.40	0.00	0.00	0.00	5.29	1.80	2.51	0.00	0.00	0.00	0.00	2.29	1.68
27	I4	Intron	0	3.36	5.54	0.44	1.88	2.04	1.44	1.27	1.06	3.25	3.10	1.18	2.09	2.50	2.18	1.87	2.26	2.42	4.58	12.87	2.31	4.40	0.85	1.14	2.36	0.90	1.15	1.05	5.88	0.39
28	I4_AR1	ActiveIntronRegion	0	0.78	2.99	1.96	0.00	0.00	0.30	6.60	1.54	1.31	1.05	4.65	3.44	1.70	3.20	0.00	0.00	1.40	4.76	10.37	2.56	3.73	0.85	0.72	0.74	1.40	2.60	0.00	2.93	0.46
29	I4_SR1	SilentIntronRegion	0	3.10	6.38	0.35	2.64	2.88	1.75	1.26	1.23	3.78	2.52	0.95	2.35	2.69	2.41	1.96	2.52	2.28	3.94	13.79	2.17	4.46	0.73	1.54	2.77	0.53	1.41	1.48	5.99	0.51
30	I4_AR2	ActiveIntronRegion	0	0.00	0.00	1.12	0.00	0.00	1.37	0.00	0.00	3.50	10.91	1.32	0.82	2.60	2.52	0.00	2.53	1.45	5.46	7.54	8.43	5.71	0.00	0.00	8.60	1.43	0.00	0.00	12.32	0.00
31	I4_AR3	ActiveIntronRegion	0	2.14	0.00	1.12	0.00	0.00	2.29	0.00	0.25	4.87	8.18	2.38	0.00	1.47	3.20	0.00	2.53	1.47	2.73	17.50	8.43	5.23	0.00	0.00	8.60	1.43	0.00	0.00	9.35	0.00
32	I4_AR4	ActiveIntronRegion	0	5.30	4.13	0.24	0.00	0.00	0.61	0.00	0.43	1.84	4.90	0.94	1.11	2.19	0.99	2.36	2.00	3.33	6.91	10.30	1.91	4.29	1.39	0.00	0.58	1.96	0.00	0.00	5.78	0.00
33	E5_Aa	NovelBoundary	0	2.89	3.88	0.00	0.00	7.37	0.00	0.00	0.00	1.43	0.00	2.59	0.00	0.00	0.00	0.00	3.21	3.83	9.25	24.28	6.37	1.64	2.29	0.00	0.00	0.00	0.00	0.00	4.04	0.00
34	ER5a	ExonRegion	0	135.67	235.06	136.92	187.07	232.32	172.18	45.92	96.98	104.28	209.51	153.84	284.53	254.82	191.98	53.27	82.04	72.93	271.22	266.25	65.97	214.21	180.83	439.81	95.20	96.97	299.19	200.09	578.21	84.59
35	E5_Da	NovelBoundary	0	15.81	8.43	2.42	0.00	0.00	3.03	7.04	14.63	6.76	5.19	1.39	2.65	0.00	2.19	0.00	3.52	6.51	9.25	8.09	3.89	5.74	0.00	0.00	0.00	0.00	11.20	0.00	16.80	0.00
36	E5a_E6a	KnownJunction	0	42.23	109.65	108.31	88.65	70.00	90.13	35.13	20.85	82.56	136.65	91.46	73.01	92.51	135.04	51.42	38.33	52.67	194.44	129.48	44.66	105.49	121.25	324.70	99.47	82.51	166.81	72.36	470.70	49.65
37	E5a_E7a	KnownJunction	0	83.52	121.38	53.04	107.63	318.76	107.70	15.96	72.06	45.01	118.28	70.39	205.66	206.89	67.47	24.52	28.23	24.74	117.77	145.44	25.80	124.18	109.15	114.11	48.27	15.23	132.48	136.72	155.78	53.61
38	E5a_E10a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.95	0.00
39	I5	Intron	0	17.13	8.32	1.11	14.33	4.65	6.93	3.84	6.13	8.10	6.32	2.04	4.75	2.40	4.82	12.77	2.94	4.12	10.69	14.29	5.36	6.51	1.03	1.89	4.09	2.58	7.63	0.52	12.10	0.96
40	I5_SR1	SilentIntronRegion	0	16.26	8.61	0.95	15.28	4.66	6.27	4.88	5.63	8.04	6.30	1.52	4.26	1.45	4.53	8.92	2.83	3.78	9.90	14.63	6.22	5.60	1.15	1.15	3.83	2.30	8.93	0.00	11.37	1.02
41	I5_AR1	ActiveIntronRegion	0	17.68	2.92	1.68	10.97	6.78	6.38	1.46	2.15	5.80	6.46	0.79	3.02	5.95	6.30	19.60	3.44	2.06	8.04	17.22	3.20	5.11	0.00	1.96	3.11	3.06	5.46	0.00	13.45	1.08
42	I5_AR2	ActiveIntronRegion	1	20.77	9.38	1.61	11.91	3.85	10.02	0.50	9.79	9.37	6.46	4.69	7.49	5.04	5.57	26.16	3.21	6.35	15.19	12.04	2.75	10.94	0.95	4.94	5.61	3.62	3.22	2.89	14.86	0.68
43	E6_Aa	NovelBoundary	0	11.09	11.34	1.52	21.57	22.11	3.91	15.45	2.34	8.04	4.79	0.00	2.53	2.77	3.28	7.57	13.77	10.24	19.26	0.00	4.05	1.60	0.00	2.27	12.02	0.00	11.24	0.00	14.96	0.00
44	ER6a	ExonRegion	0	58.25	116.43	100.29	94.90	60.22	83.18	37.99	25.86	78.62	116.95	98.83	86.83	113.07	144.58	35.84	43.98	59.48	212.81	187.37	42.41	110.69	98.99	371.14	67.93	107.30	165.23	71.51	390.96	59.80
45	E6_Da	NovelBoundary	1	20.23	8.73	2.37	0.00	0.00	9.32	5.78	12.24	6.67	1.80	1.49	6.05	11.05	4.36	0.00	9.18	9.43	4.62	16.18	3.14	10.51	2.48	2.02	0.00	4.85	0.00	0.00	24.26	0.00
46	E6a_E7a	KnownJunction	0	67.60	108.20	75.94	90.59	58.21	74.43	40.79	31.45	77.38	107.73	91.33	96.17	114.99	140.30	27.90	60.28	58.25	163.49	201.64	55.57	90.61	86.30	355.58	41.21	66.60	167.49	40.45	360.66	63.12
47	I6	Intron	0	13.07	4.64	1.70	9.11	3.31	3.61	4.44	10.45	6.60	3.42	1.81	4.60	2.91	4.56	10.35	1.62	8.73	10.25	10.28	0.57	4.59	0.76	1.23	4.56	2.42	8.79	0.31	12.43	3.34
48	I6_AR1	ActiveIntronRegion	0	14.00	5.45	1.82	11.43	4.19	4.77	4.22	12.03	5.84	3.40	1.73	4.27	2.97	5.25	9.71	1.74	9.08	11.57	10.37	0.49	4.59	0.70	1.23	4.93	2.19	9.68	0.45	12.98	3.28
49	I6_SR1	SilentIntronRegion	0	9.53	4.55	1.16	3.96	0.84	1.42	3.91	7.39	8.05	3.37	2.81	6.54	3.24	2.38	9.45	2.13	5.48	6.94	8.89	0.00	3.28	1.48	1.61	3.01	3.08	10.72	0.00	16.83	2.81
50	I6_AR2	ActiveIntronRegion	0	12.42	1.46	1.70	3.98	1.78	0.69	5.87	6.65	8.68	3.65	1.39	4.45	2.44	3.58	13.86	0.75	10.11	7.78	11.29	1.39	5.76	0.46	0.91	4.34	2.89	3.72	0.00	6.79	4.12
51	E7_Aa	NovelBoundary	0	8.14	0.00	3.76	32.14	7.37	5.49	0.00	4.98	14.37	3.79	1.61	8.04	0.00	6.00	17.74	3.06	9.45	18.75	32.15	0.00	1.72	0.00	2.51	2.51	0.00	16.31	0.00	8.49	1.55
52	ER7a	ExonRegion	0	144.16	182.69	152.76	242.47	418.52	179.26	54.45	127.96	118.10	263.43	166.28	274.61	319.52	215.49	42.24	90.67	75.76	307.07	305.95	68.90	227.28	181.36	499.00	97.69	106.46	332.62	244.27	546.32	97.63
53	E7_Da	NovelBoundary	0	13.86	0.00	2.17	0.00	19.75	4.72	2.86	0.00	6.97	1.52	0.00	3.31	7.42	5.78	17.54	3.82	5.87	4.62	8.09	0.00	3.89	0.00	0.00	11.25	0.00	3.86	0.00	8.72	0.00
54	E7a_E8a	KnownJunction	0	114.73	168.02	173.83	128.77	307.12	137.78	35.02	117.05	93.15	188.58	116.83	192.10	230.81	163.23	17.54	75.58	50.08	284.73	218.50	38.21	164.33	172.15	432.61	88.89	83.50	286.97	224.09	437.90	37.21
55	I7	Intron	0	7.60	3.51	0.91	3.91	0.00	1.50	2.75	5.52	6.88	3.16	0.32	3.53	1.42	1.98	8.03	1.35	4.07	4.29	7.84	0.54	3.11	0.98	1.97	5.87	3.12	6.43	0.00	4.45	0.00
56	I7_AR1	ActiveIntronRegion	0	7.68	3.55	0.92	3.95	0.00	1.52	2.78	5.57	6.95	3.19	0.33	3.57	1.43	2.00	8.11	1.37	4.12	4.34	7.93	0.55	3.15	0.99	1.99	5.93	3.15	6.50	0.00	4.49	0.00
57	E8_Aa	NovelBoundary	0	5.31	4.27	0.97	18.12	6.34	1.80	0.00	2.04	15.71	8.83	0.00	5.12	6.53	5.45	9.37	0.00	9.97	0.00	8.09	0.00	2.05	1.90	0.00	0.00	3.49	4.08	0.00	10.92	0.00
58	ER8a	ExonRegion	0	140.52	183.23	174.03	189.76	300.68	160.67	55.73	114.55	100.51	202.28	149.97	221.63	252.89	174.67	47.35	71.44	70.23	237.73	251.13	47.83	231.24	143.09	427.45	92.40	86.46	262.64	233.99	531.77	59.89
59	E8_Da	NovelBoundary	0	10.91	8.05	1.54	0.00	0.00	1.73	0.00	2.24	4.45	5.51	0.00	6.23	2.39	4.32	9.97	6.81	0.00	4.62	8.09	0.00	0.00	0.00	4.09	2.87	1.48	8.41	0.00	9.84	1.25
60	E8a_E9a	KnownJunction	0	24.07	12.99	8.60	9.06	20.34	19.99	10.53	11.00	21.96	20.89	20.44	10.36	8.63	44.93	7.77	3.82	9.88	38.27	24.28	4.13	11.91	2.29	28.07	2.69	16.25	14.12	14.16	8.18	4.23
61	E8a_E10a	KnownJunction	0	102.16	142.90	131.70	124.89	207.06	129.26	64.25	106.05	94.40	254.25	189.36	182.71	278.26	149.82	80.53	80.40	68.45	200.35	339.66	51.44	222.53	124.65	471.96	77.10	101.08	265.30	217.08	664.27	74.02
62	I8	Intron	0	8.76	8.52	1.68	3.21	4.92	6.00	2.70	3.91	5.68	5.09	2.00	2.03	2.47	4.71	5.25	1.81	4.51	9.72	19.14	2.62	4.87	0.50	1.32	3.85	2.16	3.25	1.03	7.12	1.72
63	I8_AR1	ActiveIntronRegion	0	7.33	11.33	0.82	2.34	4.77	5.38	1.97	2.10	5.93	5.17	1.55	1.30	3.06	5.30	6.58	0.81	5.35	9.63	19.26	4.49	5.58	0.00	0.59	5.26	3.50	1.79	0.00	4.78	2.94
64	I8_SR1	SilentIntronRegion	0	9.52	7.06	2.14	3.67	5.01	6.33	3.09	4.87	5.56	5.05	2.24	2.41	2.16	4.40	4.56	2.33	4.08	9.79	19.10	1.65	4.51	0.77	1.70	3.12	1.47	4.02	1.56	8.35	1.08
65	E9_Aa	NovelBoundary	1	10.68	0.00	10.69	10.57	6.34	3.49	5.03	2.04	56.98	19.97	3.01	32.17	24.68	33.30	16.94	20.27	62.35	0.00	8.09	15.71	37.38	4.33	2.02	21.11	12.09	2.15	8.75	30.33	25.95
66	ER9a	ExonRegion	0	20.65	24.38	6.88	10.52	15.16	14.00	7.48	6.20	17.03	18.00	6.51	8.59	19.71	26.11	11.10	2.38	6.51	17.60	37.87	6.26	11.72	2.67	21.89	8.00	11.71	16.09	18.48	8.48	8.62
67	E9_Da	NovelBoundary	0	0.00	4.36	0.00	0.00	7.37	0.00	0.00	2.34	13.49	10.95	5.69	2.92	6.27	9.73	0.00	0.00	0.92	9.25	24.28	4.13	6.74	0.00	2.31	0.00	8.56	6.09	0.00	2.02	1.29
68	E9a_E10a	KnownJunction	0	16.75	8.92	3.91	0.00	5.89	10.36	4.46	6.97	11.18	8.91	4.52	8.22	9.33	13.23	0.00	6.35	5.06	0.00	89.02	4.13	7.62	0.00	28.22	22.13	4.96	6.22	19.28	4.40	0.00
69	I9	Intron	0	0.00	6.62	0.00	0.00	0.00	4.60	1.69	1.54	0.94	6.04	1.99	1.03	0.00	0.76	8.45	0.00	0.00	9.66	5.34	4.61	4.77	0.00	0.00	0.00	1.20	2.63	0.00	2.73	0.00
70	I9_SR1	SilentIntronRegion	0	0.00	6.62	0.00	0.00	0.00	4.60	1.69	1.54	0.94	6.04	1.99	1.03	0.00	0.76	8.45	0.00	0.00	9.66	5.34	4.61	4.77	0.00	0.00	0.00	1.20	2.63	0.00	2.73	0.00
71	I9	Intron	0	16.16	21.65	1.48	0.00	6.50	10.97	8.94	13.88	20.15	11.53	4.75	3.01	2.88	11.44	41.20	11.18	7.94	17.51	15.58	11.00	4.43	4.00	0.80	11.45	8.87	4.88	3.25	9.40	2.08
72	I9_AR1	ActiveIntronRegion	0	16.30	21.84	1.50	0.00	6.55	11.07	9.02	14.00	20.32	11.63	4.79	3.04	2.91	11.54	41.56	11.26	8.01	17.67	15.72	11.09	4.47	4.03	0.81	11.55	8.95	4.92	3.28	9.48	2.07
73	E10_Aa	NovelBoundary	0	57.86	24.14	9.12	19.63	0.00	17.99	19.17	14.28	28.17	38.19	15.22	9.40	1.40	29.78	92.28	9.49	74.53	37.50	56.42	22.91	7.30	4.33	8.62	24.70	25.91	11.97	0.00	22.74	6.64
74	ER10a	ExonRegion	0	102.11	216.71	121.79	138.15	278.78	137.69	46.12	104.56	175.28	198.69	144.03	173.78	278.75	137.88	98.44	68.95	80.90	237.57	282.35	46.47	204.94	107.27	340.77	138.11	106.37	246.58	208.56	444.85	86.24