Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	FOXJ2	Gene	0	16.90	56.26	30.48	9.33	37.87	58.52	8.78	4.45	41.75	66.58	52.21	39.34	34.28	52.54	8.05	53.66	79.95	33.92	24.89	18.97	54.87	22.91	38.11	68.71	31.90	27.35	33.46	32.26	28.82
2	428177	Transcript	0	3.17	0.00	0.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.80	0.00	0.00	0.00	0.55	0.00	0.00	0.00	0.97	0.00	1.36	1.08	0.00	0.00	0.00	0.00	1.22
3	162391	Transcript	0	19.81	63.97	33.23	6.10	29.22	51.72	9.37	5.50	40.33	61.02	61.80	48.18	38.70	62.08	5.97	49.07	108.22	47.98	24.35	25.45	46.07	20.36	47.69	50.04	32.14	46.39	30.89	55.31	36.91
4	ER1a	ExonRegion	0	14.04	23.27	19.40	5.09	20.88	28.24	4.27	3.07	3.25	29.82	19.06	15.76	9.84	35.89	2.46	42.93	39.36	22.52	7.76	12.73	22.72	13.82	27.19	16.24	12.95	16.14	8.00	18.72	8.62
5	E1a_E2a	KnownJunction	0	19.58	75.14	39.74	20.28	5.45	41.78	11.27	0.00	8.92	30.56	45.14	30.24	15.99	47.37	8.37	45.98	79.12	57.41	0.00	27.37	35.46	16.14	53.88	31.34	27.73	23.69	4.67	32.53	21.76
6	E2_Aa	NovelBoundary	0	2.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER2a	ExonRegion	0	18.68	49.96	45.97	13.00	26.17	65.92	7.86	6.49	9.54	79.21	52.51	48.82	22.81	76.65	4.28	68.99	107.44	41.02	19.33	23.40	57.12	30.41	50.21	50.75	29.60	43.18	16.18	48.53	32.02
8	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
9	E2a_E3a	KnownJunction	0	30.26	50.22	41.98	10.35	19.90	111.88	9.55	11.35	20.40	120.76	55.14	57.56	30.06	129.39	0.00	66.71	124.77	46.23	24.28	26.55	92.82	38.60	53.49	72.26	47.74	40.94	14.11	50.19	37.34
10	ER3a	ExonRegion	0	31.58	73.49	45.17	5.66	28.16	90.09	8.49	6.24	13.00	92.61	68.96	63.92	41.12	104.37	10.01	79.90	107.95	52.25	19.79	30.32	81.53	39.85	56.42	56.45	45.45	32.92	20.81	49.27	30.91
11	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	1.55	3.75	0.00	0.00	0.00	0.97	0.00	0.00	3.08	0.00	0.00	3.80	0.00	0.00	0.00	2.75	0.00	0.00	0.00	0.00	0.00
12	E3a_E4a	KnownJunction	0	22.47	75.82	50.10	10.35	42.15	98.14	15.68	9.85	13.67	114.08	98.95	53.85	44.33	87.08	0.00	84.23	120.65	78.60	32.37	19.85	93.70	45.60	64.71	80.33	37.92	43.73	62.67	50.28	40.01
13	I3	Intron	0	1.06	0.86	0.00	0.00	0.00	2.03	0.00	0.00	1.71	2.84	0.59	0.12	1.08	0.71	0.91	0.98	1.47	1.33	0.63	0.74	0.70	1.24	0.00	2.54	0.70	0.31	0.00	1.12	0.00
14	I3_SR1	SilentIntronRegion	0	1.06	0.87	0.00	0.00	0.00	2.04	0.00	0.00	1.72	2.85	0.59	0.12	1.09	0.71	0.91	0.98	1.48	1.33	0.63	0.74	0.70	1.25	0.00	2.55	0.71	0.31	0.00	1.13	0.00
15	E4_Aa	NovelBoundary	0	2.89	0.00	3.04	0.00	36.84	3.84	0.00	0.00	0.00	8.39	0.00	0.00	0.00	4.63	0.00	6.81	1.10	0.00	0.00	0.00	3.09	1.80	2.12	5.14	0.00	4.12	0.00	0.00	2.05
16	ER4a	ExonRegion	0	15.38	64.41	57.47	3.07	57.18	82.10	7.71	9.47	19.93	107.99	90.41	50.69	33.62	92.87	0.00	72.47	103.69	50.63	24.53	29.53	83.78	39.97	61.17	58.67	51.54	37.72	34.11	40.73	33.15
17	E4a_E5a	KnownJunction	1	26.96	37.42	64.48	0.00	75.31	78.77	5.09	8.41	27.68	143.48	67.67	42.68	36.40	111.25	0.00	64.11	102.62	46.23	40.24	31.76	64.50	40.11	49.45	40.38	52.81	56.43	24.90	55.67	32.09
18	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.48	0.00	0.00	0.00	1.29	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER5a	ExonRegion	0	24.03	56.64	70.87	5.70	41.12	72.76	7.51	7.26	13.28	81.21	51.02	46.76	30.29	92.85	0.00	68.55	82.02	51.51	30.78	32.43	62.11	39.08	51.21	47.37	37.45	41.06	32.80	48.08	31.98
20	E5a_E6a	KnownJunction	1	25.78	61.56	34.23	8.84	19.45	40.75	2.40	7.22	18.03	51.89	59.66	37.71	10.32	89.09	0.00	59.90	84.79	50.86	16.18	47.14	54.95	24.36	73.38	34.81	41.29	25.36	50.39	28.49	21.79
21	ER6a	ExonRegion	0	32.07	61.18	49.67	8.82	41.83	67.33	8.16	5.74	22.73	84.95	54.15	43.43	30.43	94.80	4.00	70.89	86.75	54.56	31.20	23.69	62.32	43.00	59.89	40.87	37.14	41.72	38.20	42.46	34.24
22	E6_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E6a_E7a	KnownJunction	0	30.91	54.10	65.43	0.00	42.30	45.27	5.03	0.00	27.01	74.78	56.25	43.25	22.67	91.73	0.00	52.78	106.67	28.77	24.28	19.77	80.18	42.98	60.97	22.07	34.21	40.60	36.97	36.71	27.47
24	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	3.75	0.00	0.00	0.00	0.00	4.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER7a	ExonRegion	0	21.76	38.44	34.67	3.28	29.01	36.22	6.59	3.63	17.94	48.30	29.56	42.42	23.19	59.67	8.18	51.12	87.22	36.19	15.94	20.58	41.88	29.86	43.66	26.58	15.50	27.99	18.59	30.67	22.07
26	E7a_E8a	KnownJunction	1	8.14	33.06	48.63	20.28	39.35	46.39	2.92	4.78	29.33	53.37	53.78	53.82	43.95	69.99	0.00	49.88	122.99	56.64	8.09	12.90	31.33	36.41	31.62	46.96	25.19	48.02	2.09	58.73	35.56
27	ER8a	ExonRegion	0	19.29	66.95	43.56	4.80	29.94	49.60	8.10	8.56	20.20	61.70	44.82	47.26	42.31	87.33	3.62	65.40	114.11	37.67	24.85	17.03	49.14	25.01	52.88	45.64	38.96	45.61	21.69	44.76	37.53
28	E8_Da	NovelBoundary	0	0.00	4.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.66	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
29	E8a_E9a	KnownJunction	0	14.16	34.51	30.05	0.00	39.64	43.97	16.31	7.37	27.71	65.47	70.20	68.25	21.88	64.74	0.00	77.26	133.19	23.63	32.37	19.68	44.48	21.39	52.80	24.58	27.20	58.02	35.14	64.93	31.43
30	E9_Aa	NovelBoundary	0	6.02	0.00	0.00	0.00	0.00	1.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER9a	ExonRegion	0	16.26	58.27	43.13	5.22	43.70	49.20	7.44	5.11	16.82	62.37	43.89	48.16	40.27	70.05	6.53	51.81	116.33	45.56	25.84	22.39	39.08	22.95	45.17	44.77	31.07	45.00	15.26	42.44	38.94
32	E9_Da	KnownBoundary	0	5.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	1.04	0.00	0.00	2.72	0.00	0.00	0.00	1.85	0.00	2.41	3.05	0.00	0.00	0.00	0.00	2.05
33	E9a_E10a	KnownJunction	1	23.95	84.25	48.73	0.00	21.22	65.19	14.59	2.39	25.64	60.28	92.97	63.64	45.09	66.14	9.97	46.13	142.82	37.76	16.18	24.23	43.28	18.67	75.06	29.85	29.13	82.61	39.16	98.36	52.56
34	ER9b	ExonRegion	0	3.17	0.00	0.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.80	0.00	0.00	0.00	0.55	0.00	0.00	0.00	0.97	0.00	1.36	1.08	0.00	0.00	0.00	0.00	1.22
35	E9_Db	NovelBoundary	0	0.00	8.73	0.00	0.00	0.00	5.76	4.58	2.24	0.00	1.96	0.00	3.19	0.00	0.00	0.00	0.00	7.25	0.00	8.09	3.56	2.05	0.00	2.17	9.99	0.00	0.00	0.00	0.00	0.00
36	I9	Intron	0	2.41	1.39	0.58	0.00	0.42	1.78	0.87	0.00	1.60	1.25	0.31	0.64	0.22	0.98	0.00	1.66	4.77	1.53	1.38	3.10	1.60	0.00	0.47	3.35	1.36	0.81	0.00	0.00	0.87
37	I9_AR1	ActiveIntronRegion	0	1.33	0.88	0.00	0.00	0.00	2.15	0.00	0.00	2.11	0.74	0.00	0.00	0.00	1.21	0.00	0.56	3.84	1.83	1.99	3.46	0.00	0.00	0.00	2.07	0.00	0.00	0.00	0.00	1.26
38	I9_AR2	ActiveIntronRegion	0	1.55	2.76	0.00	0.00	1.18	3.19	0.97	0.00	2.17	2.13	0.29	1.40	0.00	0.88	0.00	2.22	5.93	1.23	0.77	5.55	2.07	0.00	0.87	5.47	1.73	0.38	0.00	0.00	0.95
39	I9_AR3	ActiveIntronRegion	0	1.99	0.00	0.00	0.00	0.00	1.00	0.00	0.00	1.96	0.00	1.08	1.44	0.00	1.91	0.00	3.73	1.77	1.69	0.00	1.43	2.65	0.00	0.00	1.68	2.65	0.00	0.00	0.00	0.00
40	I9_SR1	SilentIntronRegion	0	4.43	0.00	0.01	0.00	0.00	0.00	0.00	0.00	0.00	1.02	0.00	0.00	0.00	0.58	0.00	0.00	4.15	0.55	3.98	1.87	0.00	0.00	0.00	3.33	0.78	2.14	0.00	0.00	0.00
41	I9_AR4	ActiveIntronRegion	0	5.54	1.80	2.84	0.00	0.00	1.54	2.92	0.00	2.20	1.59	0.67	0.00	1.44	0.70	0.00	2.78	7.22	1.74	1.84	0.22	3.35	0.00	1.01	2.46	2.39	1.12	0.00	0.00	1.80
42	E10_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	2.04	3.20	1.54	0.00	0.00	0.00	0.00	3.69	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER10a	ExonRegion	1	18.56	68.78	39.58	3.03	22.74	45.86	8.78	5.65	35.36	74.65	63.14	54.42	36.56	67.00	1.75	54.45	149.44	61.72	32.00	26.72	48.71	22.85	58.27	35.48	42.04	58.40	20.09	75.51	41.68
44	E10_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.48	0.00	0.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.26	0.00	0.00	2.11	0.00
45	E10a_E11a	KnownJunction	0	21.35	31.51	18.19	8.63	25.35	23.56	2.75	9.70	28.29	29.72	22.84	30.30	26.30	70.08	0.00	42.07	56.68	60.11	16.18	32.00	23.18	18.33	21.97	28.65	16.97	19.78	13.77	16.18	17.96
46	I10_AR1	ActiveIntronRegion	0	0.50	2.24	0.00	0.00	0.00	2.24	0.00	0.86	0.65	1.51	0.28	0.79	0.38	0.95	0.54	2.77	2.60	0.00	0.37	0.64	1.66	0.21	0.21	0.25	0.83	0.00	0.00	0.00	0.16
47	E11_Aa	NovelBoundary	0	2.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.93	0.00	0.00	2.27	0.00	8.09	0.00	2.05	4.91	0.00	0.00	0.00	0.00	7.75	2.11	0.00
48	ER11a	ExonRegion	0	15.36	71.35	26.41	12.74	47.57	72.26	11.39	4.27	72.01	79.43	68.24	44.35	46.86	45.09	12.16	53.61	83.96	32.34	33.02	18.84	69.11	21.60	35.46	106.18	40.40	24.76	50.55	31.21	35.44
49	IG21_AR1	ActiveIntergenicRegion	0	1.16	39.86	0.36	2.40	3.18	15.32	6.93	0.55	21.01	2.75	10.25	3.16	14.44	2.91	6.58	1.17	2.46	3.40	1.46	4.75	5.40	3.07	2.47	10.80	5.81	1.54	7.96	0.71	7.97
50	IG21_SR2	SilentIntergenicRegion	0	4.38	44.87	4.49	4.38	4.05	26.02	3.52	0.92	13.74	10.98	19.47	7.43	19.03	8.97	2.09	5.53	4.13	9.07	4.79	5.83	9.54	10.70	4.64	14.29	13.08	5.85	17.21	2.35	10.76
51	IG21_AR2	ActiveIntergenicRegion	0	1.82	13.30	0.17	0.00	0.00	5.64	0.00	0.00	2.58	0.29	1.01	0.19	4.68	0.68	0.00	0.00	0.00	7.78	0.00	0.56	0.21	0.72	0.90	1.94	3.00	0.00	2.75	0.41	2.48