Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CD4	Gene	0	372.61	1014.82	985.08	96.46	128.04	1098.95	89.00	104.29	1174.59	1172.78	629.19	561.64	650.68	921.37	129.90	612.86	506.62	617.50	298.54	200.28	423.82	1656.63	475.68	1407.77	1262.33	970.46	745.21	155.11	869.18
2	11653	Transcript	0	270.70	651.66	569.15	45.20	80.32	965.98	36.91	30.04	279.82	892.79	528.28	354.53	288.58	678.03	32.71	607.55	279.66	529.08	207.58	140.76	323.85	998.23	325.58	664.24	898.09	617.55	481.37	86.82	500.69
3	437800	Transcript	0	14.01	9.53	13.78	0.51	0.77	15.84	0.88	2.00	7.66	16.82	8.78	7.00	5.27	15.11	0.71	13.01	14.62	19.33	2.68	2.14	5.46	20.44	5.76	24.48	16.06	12.68	8.46	3.05	8.87
4	IG29_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.67
5	IG29_SR3	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.79	0.00	0.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.11
6	IG29_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER1a	ExonRegion	1	135.63	358.29	528.00	52.71	155.16	597.82	20.64	17.78	144.74	487.87	324.93	232.17	148.92	321.39	15.29	399.88	228.38	351.20	107.58	73.71	206.39	628.39	207.43	265.47	490.78	597.62	415.30	68.34	372.78
8	E1_Da	NovelBoundary	0	0.00	0.00	2.59	0.00	0.00	0.00	0.00	0.00	1.49	1.48	0.00	0.00	0.00	0.00	0.00	0.00	3.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.63	0.00	0.00	1.49
9	E1a_E2a	KnownJunction	1	48.84	98.60	329.92	10.35	39.20	109.31	7.09	2.14	54.66	129.10	89.08	100.06	80.47	169.12	0.00	65.18	52.56	58.31	8.09	19.35	32.29	170.94	47.58	110.06	168.63	174.40	153.52	27.45	169.23
10	E1a_E4a	NovelJunction	0	5.60	12.31	16.49	0.00	0.00	15.81	0.00	0.00	1.71	5.31	4.08	10.06	3.98	10.39	0.00	6.73	6.80	4.62	0.00	6.12	5.13	9.19	0.00	11.01	7.50	23.13	0.00	3.59	10.50
11	I1	Intron	0	1.86	1.98	0.88	0.15	0.52	2.51	0.32	0.30	3.35	2.82	0.75	0.66	0.57	1.28	1.38	1.40	4.69	1.16	1.81	0.39	1.14	1.06	0.31	2.85	1.36	2.07	0.27	0.30	1.11
12	I1_SR1	SilentIntronRegion	0	1.57	1.43	0.85	0.21	0.58	2.28	0.24	0.19	3.15	2.17	0.48	0.53	0.54	1.16	1.15	1.47	3.93	0.92	1.05	0.36	1.00	1.00	0.38	2.02	1.15	1.43	0.36	0.34	0.94
13	I1_AR1	ActiveIntronRegion	0	3.48	4.43	0.97	0.00	1.13	3.03	0.70	0.21	4.38	4.37	1.66	1.28	1.12	2.05	2.34	0.86	8.65	1.38	4.07	0.78	1.65	1.25	0.21	5.26	1.66	3.10	0.00	0.00	2.56
14	I1_SR2	SilentIntronRegion	0	1.72	2.30	0.84	0.00	0.00	2.36	0.54	0.82	3.03	3.69	1.17	1.02	0.23	0.87	2.30	1.34	5.59	1.75	4.02	0.00	1.47	1.19	0.00	4.71	1.90	2.37	0.00	0.29	1.07
15	I1_AR2	ActiveIntronRegion	0	4.07	6.06	1.78	0.00	0.00	7.04	0.53	0.96	5.05	9.28	1.56	0.88	1.02	1.94	0.00	1.92	9.37	3.61	2.44	1.44	2.41	1.95	0.16	6.43	2.84	8.77	0.48	0.43	1.60
16	I1_SR3	SilentIntronRegion	0	1.89	2.60	0.65	0.00	0.00	0.35	0.00	0.00	1.31	1.41	0.00	0.00	0.00	0.51	0.00	0.00	0.12	0.00	7.58	0.00	0.00	0.96	1.43	2.65	0.80	3.29	0.00	0.00	0.00
17	I1_SR5	SilentIntronRegion	0	1.02	0.00	0.00	0.00	0.00	1.31	0.00	0.00	4.81	1.38	2.27	0.00	0.62	3.02	2.62	1.18	1.42	0.92	1.52	0.00	0.00	0.00	0.00	3.08	1.36	3.75	0.00	0.00	0.64
18	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.81	0.00	1.13	0.00	3.29	12.18	9.25	8.09	0.00	0.00	0.00	0.00	8.91	1.93	0.00	0.00	0.00	0.00
19	ER2a	ExonRegion	0	211.78	517.43	133.68	19.04	12.75	924.16	17.31	28.30	188.92	436.22	179.96	139.62	162.22	434.01	26.12	473.27	132.99	460.01	136.36	144.68	297.29	1013.25	151.72	448.55	579.15	391.66	115.83	34.26	278.93
20	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	1.37	8.57	2.98	0.00	0.00	8.09	0.00	0.00	1.85	0.00	3.05	0.00	0.00	0.00	0.00	0.00
21	E2a_E3a	KnownJunction	0	149.65	630.95	148.84	9.92	28.15	1070.80	40.68	24.98	225.32	1046.41	415.55	331.77	310.36	496.49	16.14	1075.42	293.66	815.79	258.51	130.50	413.82	454.38	423.55	379.95	747.70	662.12	177.57	86.45	403.69
22	E2a_E4a	NovelJunction	0	0.00	8.43	0.00	0.00	6.34	12.62	0.00	0.00	3.44	31.48	11.67	1.87	1.94	9.88	0.00	6.96	0.00	4.62	0.00	3.14	3.41	11.38	0.00	5.44	6.78	7.90	0.00	8.67	5.91
23	I2	Intron	0	0.00	0.00	0.73	0.00	0.00	1.78	0.00	0.00	1.20	1.24	0.00	1.32	1.41	0.39	0.00	0.00	2.59	0.83	0.00	0.00	0.00	0.00	0.00	2.78	1.84	0.67	0.00	0.00	0.00
24	I2_SR1	SilentIntronRegion	0	0.00	0.00	0.74	0.00	0.00	1.82	0.00	0.00	1.23	1.27	0.00	1.35	1.44	0.40	0.00	0.00	2.64	0.85	0.00	0.00	0.00	0.00	0.00	2.86	1.89	0.69	0.00	0.00	0.00
25	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.73	0.00	0.00	2.68	2.04	0.00	2.56	0.00	0.00	0.00	0.00	3.20	0.00	8.09	0.00	0.00	0.00	0.00	2.51	0.00	0.00	0.00	0.00	0.00
26	ER3a	ExonRegion	0	211.52	700.92	717.31	25.00	102.50	988.73	39.99	26.31	231.75	1021.92	717.90	393.43	290.96	698.03	30.14	609.78	341.42	503.75	226.18	156.77	325.90	808.20	391.08	653.24	916.94	727.08	815.81	113.74	570.83
27	E3_Da	NovelBoundary	0	7.49	0.00	1.15	0.00	0.00	8.71	0.00	0.00	8.86	3.52	1.17	3.01	1.75	2.22	0.00	3.52	5.63	0.00	8.09	0.00	0.00	4.72	0.00	5.50	0.00	2.19	0.00	0.00	1.68
28	E3a_E4a	KnownJunction	0	397.03	967.76	1238.22	129.20	192.76	1682.42	70.26	25.08	408.76	1236.40	677.42	419.54	440.06	931.84	74.15	740.66	316.19	532.47	193.77	189.71	498.49	1314.61	388.09	935.45	1313.52	758.77	571.47	73.06	599.56
29	E3a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.99	0.00	0.00	0.00	0.00	0.00
30	I3_SR2	SilentIntronRegion	0	0.00	1.44	0.00	0.00	0.00	0.61	0.00	0.00	1.75	1.72	0.00	0.82	0.00	0.41	0.00	1.09	3.41	0.00	0.00	0.00	0.34	0.00	0.00	1.92	1.37	0.70	0.00	0.00	0.00
31	E4_Aa	NovelBoundary	0	0.00	4.85	0.00	0.00	0.00	0.00	0.00	0.00	4.42	2.00	0.00	2.71	0.00	0.00	0.00	0.00	4.12	4.62	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
32	ER4a	ExonRegion	0	399.13	979.83	601.41	62.82	101.23	1287.76	44.83	46.10	379.09	1175.89	838.68	440.75	344.26	966.15	36.25	745.75	334.89	595.35	304.17	192.42	450.05	1441.43	413.92	1031.63	1387.92	702.44	677.86	93.00	599.16
33	E4_Da	NovelBoundary	0	10.09	25.21	12.71	0.00	0.00	19.15	0.00	0.00	5.60	23.29	4.71	18.73	3.06	15.11	0.00	35.04	24.56	9.76	0.00	0.00	10.03	20.42	2.36	33.26	19.36	11.54	37.77	2.29	13.67
34	E4a_E5a	KnownJunction	1	439.56	928.11	550.27	45.30	59.54	1417.14	35.19	37.82	461.54	1456.02	858.40	533.24	455.28	1030.64	32.29	763.46	395.26	780.09	347.75	215.02	401.30	1633.64	473.63	1031.70	1415.24	871.93	791.18	130.80	856.24
35	E4a_E6b	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.66	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.57	0.00	1.89	0.00	0.00	0.00
36	I4	Intron	0	9.76	6.08	6.35	2.18	2.22	7.32	0.31	0.84	3.74	5.92	2.35	3.37	1.57	4.95	2.23	6.19	13.37	9.41	3.39	1.97	2.60	7.66	1.37	17.31	12.15	6.44	0.28	2.23	3.05
37	I4_AR1	ActiveIntronRegion	0	9.82	6.12	6.38	2.19	2.24	7.36	0.31	0.84	3.76	5.95	2.36	3.39	1.58	4.97	2.25	6.23	13.45	9.46	3.41	1.99	2.61	7.71	1.38	17.41	12.22	6.48	0.28	2.24	3.07
38	E5_Aa	NovelBoundary	0	5.43	22.01	3.04	0.00	0.00	1.73	0.00	0.00	5.30	7.35	3.10	0.00	0.00	3.15	8.37	3.82	29.62	13.87	0.00	10.42	1.64	4.72	0.00	16.69	7.12	4.38	0.00	0.00	10.66
39	ER5a	ExonRegion	0	348.97	709.64	716.60	40.72	72.23	776.35	37.69	45.58	310.98	870.62	589.67	449.80	317.60	829.48	40.54	583.86	333.80	572.37	250.56	158.89	300.15	1240.38	372.77	842.31	1028.36	639.31	602.15	102.02	543.12
40	E5_Da	NovelBoundary	0	13.63	4.75	0.00	0.00	0.00	13.04	5.84	2.49	14.65	1.88	1.55	0.00	0.00	1.04	0.00	7.65	18.82	0.00	0.00	7.86	4.97	0.00	0.00	3.05	1.52	0.00	0.00	0.00	0.00
41	E5a_E6b	KnownJunction	0	364.88	625.04	727.29	56.94	39.64	805.30	55.44	46.28	392.47	1067.43	591.16	504.96	335.64	903.15	56.21	618.26	367.44	621.47	242.77	126.61	312.82	1277.13	386.02	944.07	932.70	650.15	493.05	139.06	613.36
42	E5a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	1.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	I5	Intron	0	9.98	3.78	2.81	0.00	0.63	6.49	1.17	0.83	4.49	4.48	0.54	1.79	0.34	4.98	3.15	7.38	17.95	7.14	4.13	2.96	2.40	2.45	0.35	12.51	3.88	4.06	1.07	0.84	1.52
44	I5_AR1	ActiveIntronRegion	0	1.42	0.04	2.52	0.00	0.00	0.91	2.54	0.00	2.98	2.96	0.00	0.90	0.00	4.24	0.00	8.09	8.87	3.58	2.12	0.00	1.80	1.01	0.00	3.02	3.45	3.10	0.00	0.00	2.79
45	I5_SR1	SilentIntronRegion	0	12.02	4.50	3.36	0.00	0.32	5.65	1.41	0.25	5.45	5.29	0.65	1.73	0.36	5.12	0.63	8.17	18.98	9.60	4.51	5.64	3.17	2.31	0.23	10.12	3.52	4.13	0.00	0.22	2.09
46	I5_AR2	ActiveIntronRegion	0	9.74	3.87	2.29	0.00	1.12	8.71	0.61	1.66	3.82	3.96	0.54	2.08	0.39	5.01	6.64	6.41	18.98	5.30	4.19	0.71	1.70	2.94	0.57	17.37	4.40	4.24	2.48	1.72	0.61
47	E6_Aa	NovelBoundary	0	4.72	8.53	8.87	0.00	0.00	15.69	0.00	2.04	4.32	7.19	3.99	3.83	0.00	4.48	9.97	0.00	43.89	4.62	0.00	0.00	5.54	0.00	0.00	32.24	0.00	10.77	0.00	2.29	4.99
48	ER6a	ExonRegion	0	14.01	9.53	13.78	0.51	0.77	15.84	0.88	2.00	7.66	16.82	8.78	7.00	5.27	15.11	0.71	13.01	14.62	19.33	2.68	2.14	5.46	20.44	5.76	24.48	16.06	12.68	8.46	3.05	8.87
49	E6_Ab	KnownBoundary	0	13.98	4.75	4.24	0.00	0.00	6.79	0.00	5.08	7.86	9.39	1.39	0.00	1.62	1.11	0.00	21.73	20.42	23.89	0.00	0.00	0.00	2.04	1.87	27.40	1.93	8.15	0.00	0.00	0.00
50	ER6b	ExonRegion	0	381.63	742.45	844.02	44.99	91.72	933.91	57.34	73.05	439.20	948.70	557.43	533.48	365.16	948.95	64.30	587.01	420.02	647.19	238.66	179.17	353.94	1514.28	400.26	1048.00	1091.47	780.23	550.42	131.71	619.48
51	E6_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	E6a_E7a	KnownJunction	0	344.83	895.05	877.45	64.92	179.94	1068.61	45.43	83.41	607.83	950.23	539.91	628.39	443.72	970.66	68.96	634.94	466.10	689.29	226.59	159.61	379.56	1440.14	411.33	1146.12	1007.48	759.45	410.00	100.20	634.45
53	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.69	0.00	2.14	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.90	2.12	2.81	0.00	0.00	0.00	0.00	0.00
54	ER7a	ExonRegion	0	313.92	714.69	912.38	77.49	100.65	884.98	56.37	74.43	488.44	934.80	462.17	549.60	391.53	887.54	69.74	561.03	449.21	663.17	231.18	174.49	323.85	1399.88	383.25	1002.05	1016.78	784.30	466.03	128.92	606.27
55	E7_Da	NovelBoundary	0	0.00	0.00	1.05	0.00	13.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	1.90	2.51	0.00	0.00	0.00	0.00	0.00	0.00
56	E7a_E8a	KnownJunction	1	347.72	844.44	982.54	65.79	122.91	974.04	53.27	80.52	709.30	1297.23	626.02	629.54	557.82	919.79	115.01	715.11	603.14	746.44	307.51	170.53	407.68	1436.20	471.86	1138.59	1221.12	1154.43	572.37	208.62	1037.91
57	E7a_E9a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55
58	E8_Aa	NovelBoundary	0	2.36	0.00	0.00	8.63	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.32
59	ER8a	ExonRegion	0	381.84	764.87	1023.04	69.17	75.34	852.96	59.40	84.84	493.72	1039.60	421.79	491.40	458.56	864.58	101.50	527.10	440.92	715.80	250.55	201.19	325.17	1643.03	395.98	1243.29	1088.80	929.76	396.63	133.56	704.23
60	E8_Da	NovelBoundary	0	2.77	0.00	0.00	0.00	0.00	1.42	0.00	0.00	0.00	0.00	0.00	2.92	0.00	1.15	0.00	0.00	11.77	4.62	0.00	0.00	1.85	0.00	0.00	2.69	3.49	0.00	0.00	2.02	0.00
61	E8a_E9a	KnownJunction	0	313.04	709.19	1088.06	40.33	39.64	697.06	58.76	67.68	525.46	812.73	355.03	445.32	352.84	742.67	66.97	550.79	447.57	694.29	226.36	178.30	263.28	1167.74	382.82	1159.28	761.87	820.18	296.00	132.19	522.87
62	I8	Intron	0	6.11	2.70	0.28	1.20	0.00	2.77	0.34	0.00	6.11	0.48	0.00	1.14	0.00	2.12	3.10	3.33	3.76	2.64	1.61	0.00	0.96	0.91	0.00	2.53	3.12	3.95	0.92	0.00	1.12
63	I8_AR1	ActiveIntronRegion	0	6.77	2.94	0.32	1.37	0.00	3.16	0.39	0.00	6.97	0.55	0.00	1.21	0.00	2.36	3.54	3.81	4.09	2.98	1.74	0.00	1.04	1.04	0.00	2.59	3.51	4.35	1.05	0.00	1.28
64	I8_SR1	SilentIntronRegion	0	1.61	1.09	0.00	0.00	0.00	0.00	0.00	0.00	0.09	0.00	0.00	0.62	0.00	0.48	0.00	0.00	1.50	0.30	0.75	0.00	0.40	0.00	0.00	2.15	0.40	1.22	0.00	0.00	0.00
65	E9_Aa	NovelBoundary	0	2.60	3.78	0.00	0.00	0.00	4.80	0.00	0.00	0.00	5.71	0.00	4.13	0.00	0.97	0.00	0.00	2.88	4.62	0.00	0.00	0.00	0.00	0.00	0.00	4.93	0.00	0.00	0.00	6.44
66	ER9a	ExonRegion	0	316.32	823.50	1094.75	68.82	91.72	800.24	60.98	82.20	575.70	906.75	408.49	501.25	406.99	821.06	95.21	581.99	487.50	639.35	259.57	187.78	348.92	1370.16	457.92	1064.91	901.15	988.21	517.27	127.29	644.00
67	E9a_E10a	KnownJunction	1	347.60	962.72	1156.28	93.83	177.14	867.61	55.73	67.18	679.03	1184.23	607.38	564.27	557.98	1010.27	73.15	741.27	719.69	360.50	0.00	184.01	327.62	1434.11	532.04	1082.00	1246.31	1272.32	735.77	169.53	1007.77
68	I9	Intron	0	2.45	4.90	0.00	0.00	0.00	1.57	0.00	0.00	2.35	1.10	0.45	1.64	0.49	2.92	5.27	2.83	2.84	0.73	1.22	0.00	0.00	0.69	0.00	4.09	2.18	2.39	0.00	0.00	0.51
69	I9_SR1	SilentIntronRegion	0	2.48	4.98	0.00	0.00	0.00	1.59	0.00	0.00	2.38	1.12	0.46	1.67	0.50	2.97	5.35	2.88	2.88	0.74	1.23	0.00	0.00	0.70	0.00	4.16	2.21	2.43	0.00	0.00	0.52
70	E10_Aa	NovelBoundary	0	5.72	4.85	3.51	0.00	0.00	5.06	0.00	0.00	3.20	3.28	4.75	1.42	1.59	7.47	0.00	7.11	20.80	0.00	0.00	0.00	2.05	1.94	0.00	16.93	3.79	6.44	2.53	1.93	7.69
71	ER10a	ExonRegion	0	455.64	1393.81	1294.98	149.79	171.77	1363.92	139.88	162.52	2088.29	1532.86	768.35	723.68	1026.99	1113.10	218.90	688.80	687.65	688.94	390.41	249.49	546.49	2164.28	622.66	2055.40	1626.90	1280.62	1008.64	212.83	1240.41