Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TRAPPC4	Gene	0	364.47	264.28	433.98	584.69	526.87	292.87	598.24	445.43	311.74	277.67	253.70	328.39	549.14	227.08	386.69	204.88	380.29	342.74	562.41	359.85	203.78	451.29	276.96	270.22	238.01	486.55	341.16	205.22	426.34
2	359005	Transcript	0	103.04	26.71	154.33	152.67	343.87	43.34	112.95	87.05	37.90	51.27	21.40	43.82	82.99	33.86	59.95	41.96	43.89	78.82	66.97	62.07	36.63	91.36	79.57	30.33	31.03	69.45	40.55	115.84	115.79
3	447216	Transcript	0	15.22	17.54	4.60	9.42	0.84	4.82	2.22	10.58	4.23	8.59	1.41	4.42	1.25	10.59	8.73	8.58	17.91	11.47	11.05	9.81	2.27	0.98	0.83	4.08	1.09	5.97	0.00	0.75	5.91
4	434101	Transcript	0	68.25	38.78	1.00	77.65	11.79	33.76	169.01	67.68	30.42	100.38	83.36	102.11	108.21	29.14	71.56	18.36	1.82	0.00	0.00	39.45	15.92	50.46	135.58	38.40	21.22	248.47	113.06	89.64	80.35
5	IG42	Intergenic	0	233.57	40.03	90.89	31.97	127.94	100.37	237.63	211.41	73.76	95.36	40.46	64.76	144.51	56.77	136.83	77.19	59.49	137.00	202.99	122.87	75.53	188.90	139.09	58.15	60.56	77.53	46.45	145.82	137.94
6	IG42_AR1	ActiveIntergenicRegion	0	236.07	40.45	91.88	32.32	129.08	101.47	240.21	213.69	74.57	96.41	40.90	65.47	146.08	57.38	138.34	78.02	60.13	138.46	205.11	124.18	76.35	190.91	140.58	58.75	61.21	78.37	46.96	147.42	139.45
7	ER1a	ExonRegion	0	103.04	26.71	154.33	152.67	343.87	43.34	112.95	87.05	37.90	51.27	21.40	43.82	82.99	33.86	59.95	41.96	43.89	78.82	66.97	62.07	36.63	91.36	79.57	30.33	31.03	69.45	40.55	115.84	115.79
8	E1_Ab	KnownBoundary	1	39.82	23.85	109.33	377.46	406.16	45.89	79.64	65.64	22.26	31.44	20.12	85.54	85.12	43.71	83.91	46.59	72.41	113.02	64.74	97.58	44.00	66.31	66.09	31.10	27.16	168.82	80.86	163.87	129.84
9	ER1b	ExonRegion	0	375.20	187.30	568.12	1012.80	807.91	210.08	528.26	398.57	218.42	229.09	126.44	447.43	583.09	233.12	293.73	194.39	543.56	347.54	307.02	368.58	178.21	506.81	267.10	156.66	159.64	664.08	204.58	265.46	556.51
10	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.16	2.00	0.00	1.66	1.37	0.00	0.00	3.82	5.45	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	1.89	0.00	1.84	0.00
11	E1a_E2a	KnownJunction	0	639.93	503.75	129.53	177.30	141.18	516.54	661.40	709.66	500.70	409.68	171.11	536.10	853.36	306.78	607.13	366.74	709.40	704.70	736.19	804.99	473.66	670.63	294.66	306.20	354.30	916.17	98.85	226.72	660.77
12	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.54	0.00	0.00	0.00	0.00	3.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.06	0.00	0.00	0.00
13	E1a_E4a	NovelJunction	0	2.54	4.46	0.00	0.00	12.82	1.46	5.72	2.39	10.99	0.00	0.00	1.33	7.61	2.17	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	1.63	4.21	0.00	0.00	0.00
14	I1_AR1	ActiveIntronRegion	0	1.29	0.00	2.01	0.00	2.93	1.24	0.59	0.55	0.34	0.87	0.36	0.37	0.00	0.27	4.41	0.74	1.34	1.16	0.96	0.00	0.00	0.54	0.00	0.00	0.43	0.47	0.00	0.98	0.00
15	E2_Aa	NovelBoundary	0	0.00	0.00	7.95	0.00	5.75	0.00	0.00	0.00	0.00	1.56	0.00	1.36	2.67	2.24	0.00	0.00	4.50	0.00	0.00	0.00	0.00	0.00	0.00	2.93	0.00	0.00	0.00	0.00	0.00
16	ER2a	ExonRegion	0	369.28	294.00	203.00	200.67	182.56	374.96	1378.12	486.53	381.78	572.60	344.94	869.09	1095.64	325.83	629.25	381.43	930.91	727.12	822.77	454.58	300.13	406.04	588.83	232.89	306.49	1408.99	383.41	516.00	1104.72
17	E2_Da	KnownBoundary	0	361.64	244.32	239.18	257.54	219.73	237.34	622.04	480.69	249.22	319.01	385.63	651.98	760.51	268.98	404.02	157.59	823.93	412.90	477.23	353.21	103.44	411.40	518.40	257.86	191.62	1048.95	876.76	517.79	757.16
18	E2a_E3b	KnownJunction	0	68.25	38.78	1.00	77.65	11.79	33.76	169.01	67.68	30.42	100.38	83.36	102.11	108.21	29.14	71.56	18.36	1.82	0.00	0.00	39.45	15.92	50.46	135.58	38.40	21.22	248.47	113.06	89.64	80.35
19	ER2b	ExonRegion	0	480.60	294.94	934.97	800.50	755.38	265.18	606.06	567.59	297.85	292.61	278.33	442.33	635.99	261.03	391.41	218.73	527.62	415.24	594.58	422.36	167.43	563.21	345.19	332.78	298.09	550.94	584.41	319.02	492.14
20	E2_Db	NovelBoundary	0	40.17	0.00	69.24	18.12	36.84	22.10	7.84	15.08	3.20	7.23	10.53	16.54	7.71	22.27	18.34	21.57	22.44	0.00	40.01	46.97	6.14	15.61	0.00	5.14	3.07	0.00	4.87	3.95	0.00
21	E2b_E3a	KnownJunction	0	592.57	387.70	1456.65	1409.76	1070.80	331.76	662.60	791.68	481.94	284.69	202.14	320.05	628.00	249.95	502.09	291.77	346.94	184.43	549.61	471.55	267.70	735.63	281.51	348.78	371.99	443.26	338.79	148.14	386.98
22	E2b_E4a	NovelJunction	0	20.41	3.59	21.00	50.04	48.63	10.90	8.01	7.17	9.29	5.43	5.57	3.10	13.53	19.08	0.00	3.82	6.75	0.00	8.09	14.14	7.30	14.20	0.00	5.86	0.00	0.00	2.34	0.00	1.49
23	E2b_E5a	NovelJunction	0	0.00	7.76	3.09	0.00	14.44	0.00	2.29	0.00	4.08	2.04	0.00	0.00	0.00	0.00	0.00	0.00	1.17	4.62	0.00	0.00	0.00	4.96	1.97	2.51	0.00	0.00	0.00	0.00	0.00
24	I2	Intron	0	14.97	10.62	7.78	9.86	3.62	11.20	8.32	10.32	6.23	9.01	3.27	6.20	3.70	10.05	14.08	10.35	17.53	16.10	21.97	13.34	7.55	3.81	1.72	8.19	3.93	3.82	1.55	2.59	3.96
25	I2_AR1	ActiveIntronRegion	0	18.68	6.24	8.64	13.88	1.58	8.43	8.46	16.64	4.53	10.72	6.15	7.96	5.85	9.63	13.33	11.21	13.01	18.33	20.62	11.85	3.22	4.07	3.50	2.78	4.15	3.04	0.00	3.68	3.45
26	I2_AR2	ActiveIntronRegion	0	13.24	12.83	7.42	7.95	4.64	12.62	8.30	7.29	7.10	8.23	1.88	5.37	2.67	10.31	14.54	10.00	19.85	15.10	22.77	14.16	9.71	3.71	0.86	10.90	3.85	4.23	2.32	2.07	4.24
27	E3_Aa	NovelBoundary	0	19.17	18.91	6.48	20.28	7.37	8.63	7.55	17.32	1.40	1.76	3.99	6.11	3.06	7.18	17.74	14.31	42.86	19.26	24.28	10.83	13.24	6.95	0.00	2.27	4.66	10.00	0.00	13.03	10.00
28	ER3a	ExonRegion	0	570.36	368.26	1001.03	1425.45	1346.35	358.64	682.30	732.52	422.90	271.79	236.53	362.85	690.63	297.01	450.75	258.32	407.52	465.86	708.21	564.49	244.04	662.31	310.50	392.89	326.73	465.43	308.88	175.58	456.89
29	E3_Ab	KnownBoundary	0	644.77	398.37	563.08	1749.48	1594.56	536.11	949.14	798.69	498.63	285.29	374.84	456.11	838.56	338.53	577.63	314.56	518.68	466.59	889.72	539.12	318.80	687.16	328.20	419.49	378.09	589.90	397.48	232.25	648.02
30	ER3b	ExonRegion	0	613.75	400.35	596.52	1570.85	990.91	522.92	933.80	728.30	445.80	395.29	443.44	492.92	834.99	346.89	529.49	307.80	552.87	530.14	895.64	513.18	310.98	646.77	376.83	421.62	385.18	663.82	538.32	249.70	610.80
31	E3_Da	KnownBoundary	0	32.97	25.40	9.77	30.20	5.75	9.94	2.46	21.20	12.58	13.30	1.30	6.93	1.56	18.48	17.94	16.98	37.14	27.74	40.46	14.31	7.30	4.47	2.51	16.75	6.44	13.48	0.00	2.25	11.29
32	E3a_E4a	KnownJunction	0	577.29	415.53	609.24	1519.12	495.76	488.84	941.13	690.05	431.09	437.92	447.22	479.60	789.42	320.03	636.63	338.66	543.64	495.10	929.96	488.26	256.79	617.00	381.24	371.16	359.53	654.27	653.67	232.07	546.74
33	E3a_E5a	NovelJunction	0	5.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.46	0.00	0.00	1.60	0.00	0.00	0.00	0.00	0.95	0.00	0.00	4.13	2.01	0.00	2.51	0.00	0.00	0.00	0.00	0.00	1.42
34	ER3c	ExonRegion	0	15.22	17.54	4.60	9.42	0.84	4.82	2.22	10.58	4.23	8.59	1.41	4.42	1.25	10.59	8.73	8.58	17.91	11.47	11.05	9.81	2.27	0.98	0.83	4.08	1.09	5.97	0.00	0.75	5.91
35	E3_Db	NovelBoundary	0	13.68	9.02	12.93	0.00	0.00	4.95	13.16	18.16	5.45	14.66	3.16	12.29	0.00	17.19	34.68	14.76	36.04	23.37	15.96	8.19	9.75	6.81	2.51	25.00	1.44	11.97	1.84	1.84	13.77
36	I3	Intron	0	17.39	9.01	10.34	10.18	5.45	16.03	7.56	7.65	13.36	14.35	5.79	8.51	3.09	11.33	15.01	14.14	27.40	21.78	26.56	12.99	9.11	1.83	0.37	17.88	5.22	2.55	0.93	4.46	8.14
37	I3_AR1	ActiveIntronRegion	0	14.95	1.40	12.39	3.13	4.26	8.39	2.64	6.42	4.89	7.55	5.19	5.92	1.98	5.13	8.42	7.27	23.42	15.40	20.89	8.05	1.87	2.36	0.00	8.44	2.49	4.80	2.40	5.68	3.80
38	I3_SR1	SilentIntronRegion	0	7.73	9.62	5.61	13.06	3.20	6.53	3.38	7.82	3.53	7.84	0.26	4.11	0.00	0.97	22.00	4.79	10.95	9.26	11.15	8.33	6.52	0.00	0.00	12.83	5.62	0.00	0.00	0.87	1.63
39	I3_AR2	ActiveIntronRegion	0	19.04	11.51	10.10	12.32	6.05	19.38	9.55	8.09	16.99	17.17	6.46	9.76	3.71	14.25	16.71	17.21	30.15	24.98	29.79	15.03	11.75	1.81	0.52	21.49	6.11	2.03	0.52	4.36	10.12
40	E4_Aa	NovelBoundary	0	19.70	8.53	9.57	0.00	7.37	47.88	14.99	7.61	60.72	28.16	12.27	18.40	10.64	25.41	61.39	25.63	59.40	18.49	48.33	21.83	38.99	8.80	0.00	31.52	19.51	0.00	9.99	4.31	7.92
41	ER4a	ExonRegion	0	743.82	591.77	602.01	788.79	601.24	768.03	1327.25	949.16	690.72	620.83	669.39	539.97	1068.63	417.55	796.30	432.73	596.11	630.37	1347.27	659.73	502.94	845.67	565.69	628.68	594.85	755.99	841.02	283.64	701.64
42	E4_Da	NovelBoundary	0	12.33	4.36	23.72	0.00	13.71	25.40	12.42	3.93	50.92	29.92	2.69	13.76	8.09	24.11	8.37	6.66	111.33	23.89	24.28	15.30	34.01	6.76	4.58	21.47	2.88	5.11	13.87	15.91	12.51
43	E4a_E5a	KnownJunction	0	725.82	738.57	464.31	523.70	638.27	736.20	1277.15	883.64	746.82	608.81	639.21	511.95	1181.08	409.92	903.91	431.45	610.90	558.03	1432.14	751.65	509.64	898.55	514.31	658.99	601.58	888.49	808.38	293.00	779.78
44	I4_SR1	SilentIntronRegion	0	3.60	0.00	5.60	0.00	2.74	3.08	2.26	7.22	3.78	4.85	1.33	0.00	4.71	1.75	10.77	6.95	1.67	13.14	12.53	9.95	4.00	0.00	0.00	1.21	1.60	0.00	0.00	1.83	0.75
45	I4_AR1	ActiveIntronRegion	0	10.33	5.19	2.69	3.77	5.24	6.60	4.33	9.88	0.60	0.78	0.00	2.98	0.70	2.18	5.42	10.63	4.81	7.24	13.72	4.44	4.59	2.90	2.91	3.46	2.30	0.00	0.00	3.48	4.31
46	E5_Aa	NovelBoundary	0	16.10	12.89	4.06	0.00	0.00	5.26	20.65	6.02	3.87	11.94	1.27	6.33	5.76	6.80	51.62	17.21	16.07	9.25	16.18	6.95	8.74	8.31	0.00	13.52	5.27	1.93	7.75	4.45	1.68
47	ER5a	ExonRegion	0	352.23	341.20	335.04	389.36	351.41	335.73	588.88	474.68	418.94	302.29	327.24	261.14	552.92	263.82	497.25	210.02	315.05	327.23	723.13	414.15	227.90	508.10	257.17	360.16	267.48	428.06	394.84	140.22	349.20