Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RNF169	Gene	0	37.48	48.90	37.29	16.83	46.74	66.32	9.03	9.05	22.33	56.47	66.79	45.36	33.69	67.89	11.61	38.47	39.00	84.11	60.01	25.25	75.36	30.17	42.60	34.77	32.16	45.76	51.83	42.22	39.04
2	299563	Transcript	0	64.27	50.09	40.97	13.70	26.36	69.17	8.13	14.50	12.70	58.32	58.04	47.94	27.29	89.97	6.40	42.15	46.04	98.32	59.67	28.94	59.82	42.59	48.65	22.62	27.64	50.87	30.28	50.09	31.10
3	ER1a	ExonRegion	0	7.38	4.06	2.29	3.58	1.45	9.81	2.05	0.65	0.88	4.91	3.04	2.96	2.66	8.86	1.89	13.67	3.67	26.07	9.33	3.37	7.15	6.04	8.62	1.40	0.94	6.89	0.64	7.35	2.66
4	E1_Da	NovelBoundary	0	0.00	0.00	1.15	0.00	7.37	0.00	0.00	0.00	1.55	1.92	1.52	0.00	0.00	0.00	0.00	0.00	1.35	0.00	0.00	3.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.59	0.00
5	E1a_E2a	KnownJunction	0	30.85	16.58	25.36	21.57	0.00	29.20	2.57	4.48	2.95	18.37	10.76	10.36	13.09	31.42	8.37	21.11	3.58	23.89	24.28	3.39	28.00	20.08	17.24	8.37	16.14	14.63	9.54	23.95	8.62
6	I1_AR1	ActiveIntronRegion	0	0.00	0.58	0.15	0.00	0.00	0.25	0.00	0.00	0.20	0.40	0.00	0.11	0.52	0.28	0.00	0.82	0.93	0.00	0.29	0.00	1.66	0.00	0.00	0.38	0.00	0.14	0.00	0.30	0.00
7	I1_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.63	0.00
8	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.25	0.00
9	ER2a	ExonRegion	0	41.86	34.09	19.23	11.27	13.06	50.45	4.90	6.22	7.52	42.61	42.46	27.60	15.36	60.33	3.94	38.47	18.40	49.49	53.09	23.36	43.10	29.09	30.72	13.52	21.50	29.14	10.57	27.82	19.08
10	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	1.75
11	E2a_E3a	KnownJunction	0	41.05	43.24	19.88	9.92	28.88	66.64	5.78	4.43	16.41	31.76	46.44	46.48	14.62	75.13	0.00	32.66	27.24	79.37	64.74	21.09	45.28	36.61	35.80	11.78	32.09	32.53	0.00	43.45	29.08
12	I2_AR1	ActiveIntronRegion	0	0.00	1.45	0.00	0.00	1.10	0.62	0.45	0.00	0.66	1.54	0.67	1.35	1.21	1.05	1.51	1.39	1.05	1.03	0.36	0.00	1.24	0.41	1.63	1.61	0.16	0.00	0.62	0.55	1.53
13	I2_SR2	SilentIntronRegion	0	1.25	3.79	0.07	1.83	0.00	1.05	0.00	0.47	3.58	3.89	0.30	0.42	1.91	0.59	1.51	3.58	2.56	0.70	0.00	0.70	4.28	0.00	0.66	1.76	1.09	0.00	0.68	1.25	0.80
14	E3_Aa	NovelBoundary	0	0.00	9.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.62
15	ER3a	ExonRegion	1	74.63	56.38	33.97	15.32	28.70	67.80	3.88	14.54	12.88	52.55	53.87	39.04	25.86	115.97	14.71	48.41	38.81	100.53	69.55	37.86	60.06	52.73	47.53	23.65	25.06	34.12	39.06	44.91	20.48
16	E3_Da	NovelBoundary	0	0.00	9.50	0.00	0.00	0.00	1.96	0.00	0.00	1.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.27	0.00	0.00	11.67	0.00	0.00	0.00	1.59	4.21	0.00	2.29	0.00
17	E3a_E4a	KnownJunction	0	77.15	75.43	57.30	37.96	41.41	79.23	4.41	17.12	21.68	89.24	69.94	64.40	43.37	102.78	0.00	56.99	71.04	122.39	32.37	36.30	55.75	47.69	64.47	41.15	30.76	42.01	51.78	44.17	29.35
18	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	3.34	0.00	0.00	1.43	1.56	1.61	4.13	1.69	1.06	0.00	0.00	0.00	0.00	0.00	0.00	6.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	I3	Intron	0	0.41	3.15	0.45	1.14	0.86	0.88	0.39	0.18	3.03	2.81	1.29	1.49	1.10	0.98	2.58	2.00	2.07	2.12	1.27	0.53	4.43	0.29	0.84	1.89	0.46	0.70	0.82	1.12	1.32
20	I3_SR1	SilentIntronRegion	0	0.14	1.46	0.54	0.93	0.95	0.71	0.39	0.00	2.55	2.25	0.46	0.68	0.34	1.06	2.21	1.36	2.04	1.92	0.62	0.00	2.87	0.23	0.00	1.26	0.19	0.41	0.00	1.06	0.09
21	I3_AR1	ActiveIntronRegion	0	0.00	1.50	0.47	0.00	0.41	0.13	0.00	0.00	1.36	1.83	0.44	0.80	0.73	0.51	0.00	0.69	0.00	0.90	1.49	0.77	2.68	0.00	0.17	1.40	0.13	0.25	1.29	0.15	0.70
22	I3_SR2	SilentIntronRegion	0	0.65	4.36	0.41	1.57	0.95	1.17	0.50	0.30	3.73	3.33	1.89	2.03	1.54	1.09	3.50	2.66	2.70	2.57	1.49	0.69	5.61	0.39	1.39	2.30	0.66	0.96	1.02	1.43	2.02
23	E4_Aa	NovelBoundary	0	0.00	3.59	1.54	0.00	0.00	4.95	0.00	0.00	12.36	19.85	0.00	1.17	2.99	3.48	0.00	7.11	7.92	4.62	0.00	0.00	16.00	0.00	0.00	4.96	0.00	2.15	2.29	0.00	3.83
24	ER4a	ExonRegion	0	93.39	76.33	65.33	16.41	25.49	104.67	11.57	21.78	17.85	81.29	92.08	71.22	32.39	134.88	11.91	45.57	67.73	138.18	74.81	37.06	78.34	64.19	68.76	26.84	31.70	72.06	23.43	60.05	45.67
25	E4_Da	NovelBoundary	0	2.77	4.75	5.51	0.00	0.00	0.00	0.00	0.00	4.14	2.04	0.00	2.98	4.87	5.05	0.00	7.65	3.65	9.25	0.00	4.13	3.85	0.00	0.00	0.00	0.00	0.00	0.00	4.40	1.68
26	E4a_E5a	KnownJunction	0	92.55	53.23	55.39	0.00	26.23	117.17	18.82	40.76	17.21	80.09	72.82	48.10	27.99	133.38	8.37	58.67	54.09	106.60	48.55	28.78	87.76	59.60	58.21	25.90	45.80	86.60	14.86	45.43	30.97
27	I4	Intron	0	1.82	4.28	1.26	1.07	1.46	2.51	0.36	0.57	4.44	6.53	3.32	2.75	2.33	2.41	2.75	4.79	3.30	4.05	2.68	1.19	9.30	0.81	2.58	3.23	1.40	1.95	3.67	3.02	2.29
28	I4_SR1	SilentIntronRegion	0	0.88	7.97	2.54	0.00	4.08	4.85	0.00	0.15	2.14	2.63	6.30	2.31	1.02	0.70	7.62	2.20	1.64	1.61	7.64	0.28	3.72	0.00	2.88	2.05	0.66	0.00	1.80	4.70	1.61
29	I4_AR1	ActiveIntronRegion	0	4.29	12.81	2.20	0.00	2.64	3.68	0.00	0.98	5.11	9.65	6.77	5.42	5.39	5.48	7.17	10.80	6.72	9.37	3.15	1.67	9.84	1.17	4.32	5.78	2.54	3.06	8.08	4.68	6.09
30	I4_SR2	SilentIntronRegion	0	2.00	4.37	1.18	1.92	1.92	3.56	0.90	0.49	4.21	7.63	4.22	3.35	1.15	3.35	2.46	4.19	3.11	5.04	2.67	1.81	11.92	0.40	3.58	3.88	1.50	2.04	4.01	2.76	2.79
31	I4_AR2	ActiveIntronRegion	0	4.29	0.57	0.70	0.00	1.72	0.14	0.00	0.00	1.16	1.89	1.40	0.55	1.34	0.84	0.00	1.57	1.00	4.23	7.18	0.00	0.00	0.00	2.06	2.52	1.18	0.00	3.16	3.15	0.93
32	I4_AR3	ActiveIntronRegion	0	2.67	9.44	2.60	4.01	1.01	1.98	0.00	1.72	5.86	12.29	5.86	4.16	4.55	3.81	2.77	10.52	6.98	6.00	3.20	1.43	13.88	0.93	4.78	5.81	1.55	3.29	7.97	6.71	3.42
33	I4_SR3	SilentIntronRegion	0	0.81	3.53	0.63	0.54	4.29	1.41	0.00	0.23	5.00	7.05	2.77	2.55	2.46	1.35	1.28	4.49	2.23	3.33	4.55	0.60	3.95	0.67	0.57	4.85	1.54	2.13	3.84	2.11	0.90
34	I4_AR4	ActiveIntronRegion	0	1.51	1.97	2.89	0.81	3.30	6.29	0.00	2.07	5.03	9.84	6.01	5.61	5.07	3.86	4.07	7.40	5.46	3.52	2.99	2.53	16.15	1.29	3.87	3.39	2.74	4.03	6.87	2.94	2.94
35	I4_SR4	SilentIntronRegion	0	0.58	1.20	1.02	0.00	0.00	0.19	0.00	0.69	3.85	2.40	2.35	2.34	1.05	1.03	3.31	4.06	1.40	1.97	4.39	0.74	8.26	1.11	0.67	3.22	0.00	1.28	2.73	0.00	0.73
36	I4_AR5	ActiveIntronRegion	0	4.30	7.86	1.24	2.40	0.82	2.03	1.96	0.00	6.45	7.28	2.99	1.34	3.66	2.27	5.49	5.24	4.06	7.19	3.28	0.00	10.57	0.73	2.12	7.71	3.58	2.01	0.00	2.73	3.99
37	I4_AR6	ActiveIntronRegion	0	1.88	2.42	0.37	0.00	0.00	0.60	0.88	0.00	5.15	4.42	1.56	1.35	1.56	0.79	2.21	0.93	1.96	2.74	0.70	0.00	2.50	0.79	4.35	0.47	0.63	0.34	0.80	5.00	2.34
38	I4_AR7	ActiveIntronRegion	0	1.71	0.58	2.79	0.00	1.22	1.79	0.00	0.00	11.77	4.17	0.33	2.76	1.78	1.22	3.90	4.07	2.76	2.85	0.00	0.50	5.96	4.96	4.52	0.00	0.71	3.68	1.83	5.11	2.67
39	I4_SR6	SilentIntronRegion	0	0.69	1.06	0.20	0.26	0.00	1.49	0.07	0.07	2.45	3.08	0.95	0.92	0.85	0.91	0.87	1.80	1.28	1.56	1.86	0.98	7.35	0.33	0.53	0.71	0.47	0.67	1.40	1.63	0.32
40	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.26	0.00	0.00	0.00	0.00	0.00	3.72	3.73	0.00	1.92	0.00	0.00	0.00	0.00	0.00	5.55
41	ER5a	ExonRegion	0	105.01	56.66	70.97	5.85	52.95	79.59	10.89	21.32	7.20	79.26	77.60	73.09	41.04	140.05	8.79	55.07	76.11	133.29	78.98	43.26	75.28	70.87	71.05	33.32	35.46	98.87	57.25	81.78	40.06
42	E5_Da	NovelBoundary	0	2.54	0.00	0.00	0.00	0.00	1.84	0.00	0.00	4.23	2.04	0.00	0.00	0.00	1.31	9.97	0.00	3.13	0.00	0.00	0.00	1.72	0.00	4.83	0.00	0.00	0.00	0.00	0.00	0.00
43	E5a_E6a	KnownJunction	1	106.17	83.38	61.71	10.78	20.63	86.48	14.93	19.01	10.57	101.58	97.88	96.05	47.51	117.72	0.00	53.24	104.96	214.86	137.57	57.72	96.14	51.24	88.45	25.00	29.85	94.80	69.18	128.05	73.85
44	I5	Intron	0	0.69	1.53	0.00	0.77	0.00	0.74	0.00	0.20	1.62	1.70	0.13	0.86	0.14	0.48	1.08	4.18	0.80	1.24	0.68	1.61	3.97	0.39	0.97	1.61	0.46	0.51	0.78	1.40	0.57
45	I5_SR1	SilentIntronRegion	0	0.69	1.54	0.00	0.77	0.00	0.74	0.00	0.20	1.63	1.71	0.13	0.86	0.14	0.49	1.09	4.20	0.80	1.24	0.69	1.61	3.99	0.39	0.97	1.62	0.46	0.51	0.79	1.40	0.57
46	E6_Aa	NovelBoundary	0	5.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	7.07	2.47	0.00	1.62	0.00	9.97	0.00	1.40	0.00	0.00	0.00	4.09	0.00	2.51	3.05	1.93	0.00	7.75	0.00	0.00
47	ER6a	ExonRegion	0	36.95	51.67	39.20	18.08	51.17	69.84	9.64	9.20	24.60	59.81	71.52	48.01	36.30	69.16	12.39	39.75	40.84	86.83	63.15	26.18	81.10	30.33	44.30	37.90	34.73	47.87	56.80	44.04	42.25