Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C11orf73	Gene	0	952.50	252.67	227.49	591.74	631.77	357.25	575.41	430.55	256.46	267.75	215.57	321.85	471.18	217.24	620.16	324.10	233.36	292.94	376.72	616.00	274.06	380.98	331.13	244.57	368.50	194.01	325.83	219.65	412.26
2	278483	Transcript	0	307.56	143.04	107.83	239.75	263.06	137.02	247.21	177.43	314.59	84.11	85.12	101.90	187.87	65.78	443.87	104.98	81.17	101.60	159.08	287.70	94.76	138.44	111.12	98.70	128.96	66.05	155.76	76.30	173.33
3	428705	Transcript	1	47.81	1.93	1.73	20.67	12.02	13.03	19.02	7.52	8.08	9.70	5.54	7.45	4.26	10.41	14.98	4.46	14.76	9.49	46.64	16.38	14.92	1.76	1.81	12.86	2.45	1.74	1.15	1.98	19.55
4	IG24_AR2	ActiveIntergenicRegion	0	17.93	29.99	8.15	12.68	9.30	20.76	12.61	25.25	21.81	29.08	25.35	9.23	22.71	14.10	22.24	27.10	24.59	9.08	10.43	15.59	9.48	6.86	5.77	12.60	12.44	8.36	8.72	11.69	7.08
5	ER1a	ExonRegion	1	67.23	2.96	12.23	69.96	99.63	7.06	18.28	30.62	5.73	4.38	5.24	9.03	24.77	3.42	22.03	19.15	9.52	22.93	26.85	34.48	5.04	23.68	20.67	2.29	12.58	35.57	18.13	31.41	25.72
6	ER1b	ExonRegion	0	941.92	119.66	230.61	789.37	765.57	193.60	361.63	450.02	93.78	186.11	108.77	217.40	312.58	117.02	347.57	343.47	174.86	278.81	218.93	429.62	177.23	450.26	286.78	104.64	206.44	222.87	191.50	190.60	331.57
7	E1_Da	NovelBoundary	0	9.02	4.85	0.00	0.00	0.00	5.76	0.00	0.00	1.19	0.00	0.00	0.00	4.30	2.08	0.00	0.00	6.66	5.27	0.00	2.98	0.00	0.00	0.00	2.69	1.93	0.00	0.00	2.25	0.00
8	E1a_E2a	KnownJunction	0	1551.79	357.36	98.26	133.73	153.86	534.73	801.35	842.49	231.93	453.74	135.21	303.13	577.37	258.79	812.03	800.64	281.23	655.76	420.36	868.26	498.89	763.39	443.59	201.16	472.77	339.67	101.33	357.88	625.90
9	E1a_E3a	NovelJunction	0	42.35	7.76	0.00	0.00	0.00	27.36	43.03	89.13	10.20	12.62	2.72	20.36	10.89	5.41	44.25	21.96	12.38	27.74	32.37	46.64	5.41	24.02	14.58	11.42	19.32	12.87	7.16	24.58	37.77
10	I1_AR1	ActiveIntronRegion	0	3.77	1.20	1.71	3.47	2.84	2.29	2.25	0.71	0.42	3.30	0.84	2.52	1.19	0.81	1.72	2.77	7.30	2.99	2.87	3.20	0.44	0.67	0.00	2.40	1.56	0.59	0.00	4.25	0.00
11	I1_SR1	SilentIntronRegion	0	17.55	0.00	3.09	7.31	9.96	6.62	0.00	1.84	0.00	2.35	1.49	2.47	0.16	2.61	0.00	0.00	10.83	4.26	5.09	5.62	2.85	0.00	0.00	0.00	1.07	0.00	0.00	0.61	0.00
12	I1_AR2	ActiveIntronRegion	0	9.40	3.27	1.57	4.20	4.63	5.28	5.57	2.87	4.46	3.25	3.14	0.98	1.84	3.68	3.21	3.35	9.82	6.78	3.80	6.38	5.11	2.14	1.12	3.03	2.79	0.62	1.76	1.09	0.79
13	E2_Aa	NovelBoundary	0	3.01	0.00	1.15	0.00	7.37	7.83	0.00	0.00	1.40	2.04	0.00	1.14	0.00	2.06	0.00	3.82	5.27	4.62	0.00	0.00	0.00	0.00	0.00	5.38	3.79	0.00	0.00	0.00	0.00
14	ER2a	ExonRegion	0	1562.63	410.52	472.76	1070.84	1319.40	560.28	965.15	673.50	263.07	504.68	403.28	600.58	800.59	408.79	983.92	575.18	437.18	508.12	685.97	1013.94	412.03	558.93	624.31	420.09	657.22	354.83	632.14	425.49	685.97
15	E2a_E3a	KnownJunction	0	1587.53	478.64	281.51	1181.56	1191.06	711.95	1368.81	567.23	414.31	644.04	487.36	698.12	912.72	431.23	1290.99	642.44	432.43	645.88	930.63	951.04	483.21	583.60	651.47	471.88	764.30	300.61	613.27	415.30	853.86
16	E2a_E4a	NovelJunction	0	2.54	0.00	0.00	0.00	0.00	3.80	2.35	2.34	1.67	0.00	6.86	0.00	0.00	0.00	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00
17	I2_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.67	0.00	0.00	0.00	0.00	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00
18	I2_AR1	ActiveIntronRegion	0	38.09	13.82	5.81	26.80	6.08	18.20	21.09	13.72	7.15	7.51	23.40	10.27	10.91	18.35	2.66	11.53	17.36	7.67	21.28	41.46	7.38	11.77	4.74	21.31	24.39	8.92	6.12	10.09	6.61
19	E3_Aa	NovelBoundary	0	2.77	0.00	0.00	0.00	0.00	0.00	2.57	0.00	5.51	3.08	1.30	4.28	0.00	0.00	0.00	3.82	2.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.24	0.00	3.96
20	ER3a	ExonRegion	0	1909.58	513.25	193.80	611.57	494.58	741.33	1177.18	859.54	616.31	520.32	451.17	623.56	969.37	471.62	1186.89	540.31	445.53	510.10	693.14	1127.62	542.47	703.06	574.87	538.51	808.72	306.91	565.34	347.37	753.35
21	E3_Da	NovelBoundary	1	34.33	0.00	3.99	0.00	0.00	18.95	0.00	1.94	4.69	11.62	1.61	9.07	0.00	12.52	24.32	25.47	14.38	23.63	8.09	6.95	11.51	8.75	4.63	14.48	0.00	0.00	0.00	13.39	14.79
22	E3a_E4a	KnownJunction	0	1279.69	532.26	213.15	507.09	371.52	467.93	977.29	636.90	717.22	408.72	298.85	489.75	795.19	359.98	980.85	461.36	425.29	369.37	897.59	848.49	362.36	507.71	344.06	383.06	451.06	206.93	354.89	202.37	667.90
23	E3a_E5a	NovelJunction	0	3.01	0.00	0.00	0.00	0.00	1.53	0.00	0.00	0.00	2.04	0.00	1.54	1.97	0.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.04	0.00	0.00	0.00	0.00	0.00	1.58
24	I3	Intron	0	6.34	6.34	1.05	2.49	2.72	7.36	2.17	1.09	4.42	4.32	1.94	3.35	0.88	3.96	7.08	9.24	6.65	12.60	10.00	4.41	6.35	0.82	0.57	4.86	2.59	1.15	1.21	1.36	1.63
25	I3_SR1	SilentIntronRegion	0	6.41	6.48	1.23	2.35	2.63	6.95	2.08	0.81	3.82	4.44	2.20	3.25	0.86	3.77	7.13	8.61	6.92	12.74	9.86	4.63	6.76	0.62	0.35	4.00	2.28	0.65	1.26	1.68	1.58
26	I3_AR1	ActiveIntronRegion	0	5.16	7.18	0.75	3.49	3.44	8.08	3.00	1.38	6.82	3.71	1.01	4.02	0.99	4.58	6.46	11.48	6.03	12.58	11.48	2.66	5.89	1.15	0.84	6.36	3.31	2.24	1.38	0.74	1.37
27	I3_SR2	SilentIntronRegion	0	10.99	1.52	0.00	0.38	1.02	10.59	0.00	3.61	2.43	5.89	2.82	2.08	0.77	4.24	9.77	8.66	6.37	12.18	6.03	9.55	3.49	2.03	2.25	10.37	3.79	3.22	0.00	0.00	3.48
28	E4_Aa	NovelBoundary	0	15.99	31.31	0.00	0.00	21.52	13.08	2.52	2.39	12.24	1.64	2.78	2.47	1.40	10.06	16.34	11.47	6.39	13.87	8.09	4.13	14.52	0.00	0.00	17.29	0.00	0.00	0.00	0.00	6.44
29	ER4a	ExonRegion	0	1461.89	416.82	458.83	920.17	1113.90	762.13	1100.80	680.98	616.07	451.79	377.06	565.70	850.70	356.47	1023.59	419.72	381.92	416.03	541.46	966.85	583.73	623.02	537.54	463.60	688.69	288.47	622.24	379.43	766.31
30	E4_Da	KnownBoundary	0	276.64	92.59	133.02	159.40	163.43	94.19	156.54	102.17	279.86	66.03	65.55	91.26	161.64	75.69	166.23	59.06	108.76	32.24	48.55	175.90	62.45	80.41	52.06	100.13	77.66	38.45	101.98	45.88	169.39
31	E4a_E5a	KnownJunction	0	684.59	301.71	263.95	506.66	580.20	296.31	575.70	422.11	796.91	196.01	196.99	232.53	420.47	146.72	996.00	207.77	189.33	196.11	291.10	560.37	193.05	312.71	249.99	219.94	305.66	135.57	369.70	158.47	389.13
32	ER4b	ExonRegion	0	47.81	1.93	1.73	20.67	12.02	13.03	19.02	7.52	8.08	9.70	5.54	7.45	4.26	10.41	14.98	4.46	14.76	9.49	46.64	16.38	14.92	1.76	1.81	12.86	2.45	1.74	1.15	1.98	19.55
33	E4_Db	NovelBoundary	0	76.45	23.37	0.00	31.92	18.13	65.69	17.34	14.03	17.36	14.10	6.04	5.63	0.00	24.97	7.77	38.48	29.69	32.36	72.83	18.69	36.50	0.00	6.30	46.72	5.27	1.89	0.00	0.00	13.83
34	I4	Intron	0	38.29	9.62	2.60	34.03	16.02	22.18	14.44	5.08	15.57	9.35	2.26	7.88	1.90	17.66	34.85	32.01	26.92	16.15	27.02	20.05	15.39	0.47	1.25	20.42	3.58	1.36	1.90	2.25	8.82
35	I4_AR1	ActiveIntronRegion	0	38.42	9.65	2.61	34.14	16.07	22.26	14.49	5.10	15.62	9.38	2.27	7.91	1.91	17.72	34.96	32.11	27.01	16.19	27.11	20.12	15.44	0.47	1.25	20.48	3.59	1.36	1.90	2.26	8.85
36	E5_Aa	NovelBoundary	0	7.73	27.82	0.00	29.55	7.37	18.80	2.92	2.54	14.59	4.07	4.75	0.00	1.62	2.53	25.31	6.88	12.45	4.62	8.09	7.53	11.35	0.00	2.12	23.15	1.93	0.00	0.00	0.00	4.95
37	ER5a	ExonRegion	0	170.85	124.44	47.31	142.63	109.34	107.69	147.67	79.55	141.14	51.94	53.13	64.16	118.36	47.20	313.57	88.01	44.65	85.77	159.27	268.24	86.19	78.93	62.68	73.87	68.64	27.02	79.45	39.03	105.14