Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	YAP1	Gene	0	18.94	69.12	25.13	7.41	5.19	42.42	20.25	3.75	16.54	75.25	21.58	17.55	6.94	29.31	9.79	24.54	32.31	67.93	39.22	14.80	62.77	9.13	69.08	89.42	53.10	22.50	58.46	7.51	28.24
2	282441	Transcript	0	22.33	27.61	32.30	9.97	4.67	32.89	12.78	7.83	4.37	61.41	20.13	16.61	3.00	38.25	2.65	18.78	31.38	58.09	22.77	7.76	43.88	10.56	68.06	48.98	45.72	29.14	33.09	8.01	22.55
3	345877	Transcript	0	2.62	14.46	8.66	5.17	0.00	4.56	0.00	1.53	0.80	12.12	0.00	3.45	1.39	8.16	0.00	4.46	7.56	21.13	2.51	2.23	3.51	2.06	18.03	6.08	11.04	2.45	3.06	1.39	3.20
4	IG16_SR2	SilentIntergenicRegion	0	1.04	0.00	1.01	0.00	0.00	0.16	0.00	0.00	0.00	1.82	0.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	2.55	0.49	4.00	0.00	0.88	0.00	0.00	0.00	0.00
5	IG16_AR2	ActiveIntergenicRegion	0	0.75	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.02	0.67	0.00	0.00	0.76	0.00	0.00	0.00	0.00	0.00	3.19	0.00	0.00	1.57	0.00	1.52	1.34	0.00	0.00	0.00
6	IG16_AR3	ActiveIntergenicRegion	0	1.43	2.55	0.00	0.00	0.00	1.53	0.00	1.94	0.00	1.12	0.00	0.69	0.00	0.00	0.00	0.42	0.00	12.89	9.55	0.00	3.33	0.00	1.21	0.00	0.00	0.00	0.00	0.00	0.75
7	ER1a	ExonRegion	0	12.90	7.83	9.20	0.53	1.80	12.00	5.43	1.63	1.08	19.07	2.55	4.67	0.59	14.71	1.77	8.21	6.30	24.69	5.53	5.15	16.08	4.02	31.60	12.55	11.48	8.98	4.61	2.04	5.14
8	E1a_E2a	KnownJunction	0	19.52	54.68	42.65	0.00	0.00	30.23	23.40	0.00	2.59	69.03	9.74	16.17	3.12	54.59	0.00	20.96	25.68	75.52	24.28	0.00	42.72	23.48	106.28	80.39	67.06	40.55	16.40	7.91	18.98
9	ER2a	ExonRegion	0	41.77	38.11	42.30	3.58	9.76	49.49	14.32	7.66	6.42	103.68	22.47	29.86	7.95	71.50	7.61	23.44	53.29	114.68	28.49	17.36	66.35	18.49	139.28	81.82	87.92	49.36	53.15	14.25	41.34
10	E2a_E3a	KnownJunction	0	37.57	62.15	65.00	10.78	33.31	45.66	8.75	2.24	3.29	128.54	42.36	47.41	14.52	65.21	34.28	24.02	68.23	163.62	48.55	10.17	106.13	12.40	131.20	101.63	147.11	39.70	64.01	8.13	73.59
11	ER3a	ExonRegion	1	51.78	53.61	59.80	16.14	15.37	47.95	8.64	14.20	6.31	115.89	23.30	32.39	11.83	85.81	6.86	26.05	72.58	115.12	26.14	19.34	62.98	20.44	169.45	82.13	92.87	57.99	67.62	21.46	50.86
12	E3a_E4a	KnownJunction	0	30.91	57.30	32.19	10.78	0.00	32.92	5.44	20.11	10.48	96.19	29.17	20.72	1.34	56.12	8.37	13.85	35.47	59.98	16.18	21.75	62.61	15.61	70.53	85.06	81.34	38.06	44.38	14.69	39.98
13	E3a_E5a	KnownJunction	0	4.84	9.02	11.61	0.00	0.00	1.96	0.00	2.44	1.55	5.27	0.00	0.00	4.17	2.84	0.00	3.82	9.16	29.41	0.00	3.64	5.66	1.90	22.61	8.02	16.18	2.19	4.92	4.18	8.02
14	I3_AR11	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.95	0.00	0.00	0.00	1.35	0.00	1.02	0.00	0.00	0.00	0.00	0.00	1.58	0.00	0.00	0.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	I3_AR12	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	2.63	0.00	0.00	1.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.48	0.00	0.00	0.00	0.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	I3_AR13	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.98	0.00	0.00	1.07	1.71	0.00	0.13	0.00	0.25	0.00	0.00	0.90	3.33	0.00	0.00	1.11	0.00	0.00	0.00	1.07	1.65	0.03	0.00	1.16
17	I3_AR14	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	2.69	0.00	0.00	0.00	1.73	0.00	2.13	0.00	0.91	0.00	0.00	0.00	0.00	0.00	0.00	1.43	0.00	0.00	1.38	0.34	2.39	1.83	0.00	0.00
18	I3_AR15	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	2.75	0.00	0.00	0.00	0.62	0.00	2.47	0.00	0.52	0.00	0.00	0.00	0.00	0.00	0.00	1.32	0.00	0.00	4.30	0.00	0.00	1.83	0.00	0.67
19	I3_AR16	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	2.09	0.00	0.00	1.62	1.10	0.00	1.47	0.00	0.00	0.00	0.00	0.59	0.00	0.00	0.00	0.00	0.00	0.00	1.91	0.00	0.00	0.17	0.00	1.34
20	I3_AR18	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00	0.00	5.02	0.00	0.00	0.00	0.00	0.00
21	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER4a	ExonRegion	0	34.09	41.09	50.20	15.97	6.77	40.54	8.77	11.09	3.99	88.21	23.51	23.69	4.93	57.29	7.52	26.00	44.50	95.31	36.92	9.44	57.36	18.52	115.90	59.74	74.33	31.10	47.39	9.14	33.94
23	E4a_E5a	KnownJunction	0	26.31	22.59	46.17	11.00	21.22	43.13	5.26	12.29	0.00	57.08	19.80	20.09	4.46	60.97	0.00	10.40	38.67	64.73	48.55	3.80	47.85	14.15	78.26	51.68	45.31	43.86	44.03	1.71	21.13
24	E5_Aa	NovelBoundary	0	0.00	0.00	6.98	0.00	0.00	0.00	2.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.68	0.00	0.00	0.00	2.05	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
25	ER5a	ExonRegion	0	35.39	44.74	74.65	11.25	5.34	44.49	27.49	8.38	6.04	88.32	23.33	28.96	6.07	52.69	3.08	21.98	49.03	95.91	21.83	11.38	54.45	19.93	100.61	40.91	50.33	39.42	35.53	8.62	30.35
26	E5a_E6a	KnownJunction	0	15.10	7.66	24.09	10.78	0.00	26.51	11.16	0.00	6.40	50.89	12.81	7.08	3.28	22.71	0.00	6.66	22.85	42.38	8.09	0.00	37.94	4.28	43.98	31.22	22.01	29.87	17.49	4.36	10.04
27	E5a_E7a	NovelJunction	0	13.15	16.58	18.31	10.57	13.56	18.80	7.61	5.08	0.00	30.12	1.55	7.56	0.00	27.36	0.00	13.23	14.86	51.63	24.28	7.53	16.20	2.48	71.12	13.76	24.17	10.34	24.75	8.63	10.27
28	E5_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E5b_E6a	NovelJunction	0	5.49	4.85	8.42	0.00	0.00	3.88	0.00	0.00	0.00	21.73	6.07	4.79	0.00	7.18	0.00	0.00	5.76	13.87	8.09	0.00	7.18	2.43	18.96	0.00	15.91	4.38	2.29	2.29	7.92
30	E5b_E7a	KnownJunction	0	0.00	18.23	7.08	8.20	0.00	5.64	0.00	0.00	0.00	14.86	0.00	4.28	0.00	9.84	0.00	3.44	6.75	14.64	0.00	0.00	0.00	2.48	13.54	5.56	6.93	1.89	0.00	0.00	0.00
31	E5b_E9a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.31	0.00	1.74	6.57	0.00	0.00	0.00
32	ER5b	ExonRegion	0	3.04	16.15	7.29	7.31	0.00	6.07	0.00	2.15	0.84	16.24	0.00	6.08	0.00	11.79	0.00	6.12	6.76	19.33	7.54	3.04	4.87	1.80	17.93	4.66	10.01	3.27	4.27	0.00	1.57
33	E6_Aa	NovelBoundary	0	0.00	4.75	0.00	0.00	0.00	0.00	0.00	1.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.13	0.00
34	ER6a	ExonRegion	0	12.10	13.00	23.66	11.27	0.00	30.53	16.08	0.96	4.17	38.77	22.07	12.76	2.46	18.76	0.00	18.35	26.84	39.12	10.65	4.51	31.74	6.95	40.54	38.18	25.40	17.12	18.77	7.47	12.67
35	E6a_E7a	KnownJunction	0	15.45	24.04	17.52	0.00	0.00	23.71	29.98	2.54	1.22	37.31	13.41	15.30	1.53	13.65	0.00	37.41	19.97	47.01	16.18	7.03	25.79	3.84	59.15	27.99	25.91	14.81	26.49	10.69	17.56
36	E6a_E8a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.45	0.00	0.00	0.00	0.00	0.00
38	ER7a	ExonRegion	0	36.26	59.48	89.77	17.14	5.55	48.79	44.55	5.16	9.56	127.22	44.36	37.51	6.85	56.35	4.49	26.76	67.58	116.40	29.54	16.09	69.73	18.66	107.25	59.94	78.56	62.97	59.20	10.48	36.40
39	E7_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.70	0.00	0.00	0.00	0.00	0.00	1.87	5.50	0.00	0.00	0.00	0.00	0.00
40	E7a_E8a	KnownJunction	0	19.70	60.01	92.61	0.00	0.00	37.29	26.55	2.34	8.56	84.68	22.30	29.97	8.98	40.70	8.37	24.48	44.43	87.97	16.18	30.52	39.07	10.60	86.97	79.85	69.48	28.02	28.28	9.88	20.57
41	I7_SR1	SilentIntronRegion	0	0.55	1.86	0.85	0.00	0.00	1.27	0.00	0.00	2.32	2.74	0.08	0.43	0.17	0.78	0.00	1.62	2.06	1.57	0.81	1.05	1.43	0.11	0.58	0.68	1.64	0.00	0.24	0.21	0.00
42	I7_AR1	ActiveIntronRegion	0	0.00	2.54	0.16	0.00	0.00	0.86	0.00	0.00	1.12	1.91	0.49	0.00	0.00	0.30	0.00	1.82	0.80	2.02	1.31	1.13	0.16	0.00	0.74	0.00	0.00	0.00	0.72	0.00	0.00
43	I7_SR2	SilentIntronRegion	0	1.85	8.35	2.17	0.00	0.00	1.78	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	1.84	2.58	0.83	0.00	0.00	0.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E8_Aa	NovelBoundary	0	0.00	0.00	1.54	0.00	0.00	3.45	0.00	0.00	0.00	1.84	0.00	0.00	0.00	1.06	0.00	0.00	1.06	0.00	0.00	4.05	0.00	0.00	0.00	6.04	1.67	0.00	2.53	6.69	0.00
45	ER8a	ExonRegion	0	30.35	47.88	101.96	16.18	1.54	40.13	25.69	6.52	6.50	89.94	36.85	31.60	7.55	48.91	2.73	30.14	56.49	87.79	36.49	19.30	56.34	16.50	92.57	58.18	87.23	58.15	70.30	21.22	27.91
46	E8a_E9a	KnownJunction	0	33.86	47.51	96.89	0.00	13.41	38.60	34.61	4.23	11.79	103.78	20.21	28.82	8.12	57.52	8.37	34.50	64.29	88.62	48.55	15.05	97.03	18.38	117.95	56.53	87.06	50.72	145.66	8.00	28.36
47	I8_AR1	ActiveIntronRegion	0	0.54	0.00	0.84	0.00	0.00	0.69	0.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.75	0.97	1.61	1.38	0.72	0.00	0.45	2.70	0.36	1.58	0.00	4.91	0.00
48	I8_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.23	0.49	0.51	0.00	0.00	1.14	0.69	0.68	0.00	1.09	0.00	0.00	0.77	1.09	0.00	0.00	5.19	0.00
49	E9_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	3.41	0.00
50	ER9a	ExonRegion	0	15.41	87.00	18.12	7.56	5.31	47.49	22.87	3.01	22.07	79.85	23.66	16.88	8.06	24.07	12.48	27.57	31.45	67.35	48.42	16.59	72.30	7.77	63.68	110.64	55.29	18.62	70.30	7.04	30.68