Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	LRRC32	Gene	0	77.40	40.29	157.02	45.18	8.16	193.38	64.02	213.55	16.92	29.96	16.69	15.69	11.38	52.06	59.37	35.84	14.14	801.13	26.20	40.61	520.72	126.36	269.30	216.96	149.55	93.85	153.05	25.32	327.06
2	404995	Transcript	0	22.12	17.94	17.96	31.71	0.00	35.22	38.05	74.55	4.66	11.62	3.16	4.46	3.06	12.03	32.49	10.48	5.09	20.93	0.00	4.13	84.63	40.69	54.57	74.47	39.17	14.38	20.92	8.58	121.72
3	260061	Transcript	0	4.29	0.00	3.37	0.00	0.00	1.37	0.00	1.84	0.00	1.44	0.00	0.00	0.00	2.72	0.00	0.00	0.00	13.65	0.00	2.81	4.28	3.61	1.81	8.60	4.29	1.57	7.33	0.00	5.37
4	421973	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	407242	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	464145	Transcript	1	2.14	0.94	3.82	15.14	0.36	19.71	138.87	20.80	1.85	0.67	0.21	0.13	0.09	2.73	4.09	5.74	0.29	14.33	0.65	0.70	26.07	3.72	11.02	5.04	10.27	6.41	1.57	0.17	12.29
7	ER1a	ExonRegion	1	22.44	8.38	66.80	53.92	0.89	78.78	80.15	41.88	4.13	14.41	1.39	1.50	0.26	13.82	11.74	22.32	2.66	364.75	5.91	12.73	179.28	44.02	118.76	32.68	29.71	30.79	20.87	6.42	87.97
8	E1a_E3b	KnownJunction	0	13.86	19.39	27.01	9.27	7.37	78.77	30.21	52.95	9.32	14.66	8.29	4.04	1.85	19.85	9.97	13.31	8.58	260.33	16.18	15.55	130.20	42.98	94.51	48.45	25.80	21.16	25.59	3.55	130.50
9	I1	Intron	0	4.28	0.00	1.05	2.26	0.00	3.47	0.00	0.39	0.00	0.00	0.00	0.00	0.00	0.10	0.00	0.78	0.00	23.63	0.34	0.58	4.05	0.38	0.95	0.45	0.60	0.33	0.19	0.00	0.63
10	I1_SR1	SilentIntronRegion	0	4.30	0.00	1.06	2.27	0.00	3.48	0.00	0.39	0.00	0.00	0.00	0.00	0.00	0.10	0.00	0.79	0.00	23.73	0.34	0.58	4.07	0.38	0.95	0.45	0.60	0.33	0.19	0.00	0.64
11	E2_Aa	NovelBoundary	0	2.54	0.00	3.59	0.00	0.00	3.72	0.00	2.39	1.28	0.00	2.40	0.00	0.00	2.50	0.00	2.91	0.00	51.50	0.00	0.00	8.94	1.85	4.24	0.00	1.63	0.00	0.00	0.00	1.25
12	ER2a	ExonRegion	0	9.20	7.19	3.59	0.00	4.06	6.45	1.29	2.36	0.24	2.60	2.88	1.31	0.06	7.10	0.98	1.97	2.36	45.79	3.41	2.45	22.79	3.03	16.83	10.13	19.05	5.83	12.84	4.92	8.86
13	E2_Da	NovelBoundary	0	13.09	0.00	2.37	0.00	0.00	9.25	2.92	5.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	18.49	0.00	0.00	18.17	0.00	2.17	3.05	1.89	0.00	0.00	0.00	0.00
14	E2a_E3b	KnownJunction	0	7.08	4.46	4.06	0.00	0.00	1.88	0.00	0.00	0.00	2.00	1.55	0.00	1.34	12.16	0.00	0.00	2.61	23.12	0.00	0.00	18.45	0.00	11.18	11.07	39.55	1.97	14.91	1.71	7.89
15	I2	Intron	0	6.49	0.15	1.37	0.17	0.12	5.15	0.10	1.81	0.12	0.14	0.00	0.00	0.00	0.87	0.40	0.42	0.11	25.43	0.23	0.07	4.46	0.26	1.13	0.31	0.86	0.94	0.26	0.00	0.43
16	I2_SR1	SilentIntronRegion	0	6.49	0.15	1.37	0.17	0.12	5.16	0.10	1.82	0.12	0.14	0.00	0.00	0.00	0.87	0.40	0.42	0.11	25.44	0.23	0.07	4.46	0.26	1.13	0.31	0.86	0.94	0.26	0.00	0.43
17	E3_Aa	NovelBoundary	0	8.38	0.00	0.97	0.00	0.00	3.72	0.00	6.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	18.49	0.00	0.00	3.53	0.00	1.97	0.00	0.00	0.00	5.96	0.00	1.68
18	E3_Ab	NovelBoundary	0	2.30	0.00	2.99	0.00	0.00	3.91	0.00	6.47	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	2.51	0.00	0.00	7.51	0.00	0.00	1.68
19	ER3a	ExonRegion	0	4.29	1.88	2.16	0.52	0.71	5.50	2.30	6.97	0.40	1.34	0.43	0.27	0.19	3.05	0.40	1.08	0.57	28.66	1.29	1.41	14.16	2.96	7.36	4.76	4.29	2.13	3.14	0.35	9.49
20	ER3b	ExonRegion	1	69.26	32.47	33.33	11.01	7.39	185.06	90.78	139.80	8.25	26.44	13.04	6.65	3.94	44.05	24.98	36.36	10.29	612.84	22.06	40.87	431.24	117.28	192.05	123.04	105.44	57.16	51.09	13.10	163.62
21	E3_Da	NovelBoundary	0	18.17	0.00	2.69	0.00	0.00	44.62	9.90	16.47	1.40	3.28	0.00	1.45	0.00	6.49	0.00	10.10	1.40	135.62	0.00	11.91	60.09	17.60	27.53	10.89	12.12	20.47	17.34	0.00	21.59
22	E3a_E4a	KnownJunction	0	63.47	49.64	36.65	17.69	0.00	250.85	67.69	100.83	5.91	30.32	32.52	7.47	7.13	43.67	45.84	51.94	17.24	982.11	16.18	23.90	618.82	104.28	341.94	120.23	140.78	87.97	61.48	29.12	234.73
23	E3a_E4b	KnownJunction	1	0.00	0.00	5.48	29.77	0.00	33.92	275.43	34.64	3.29	0.00	0.00	0.00	0.00	2.42	7.77	10.40	0.00	0.00	0.00	0.00	37.98	4.47	14.68	5.32	16.25	10.69	0.00	0.00	15.09
24	I3	Intron	0	15.86	2.16	9.73	4.01	0.16	18.35	3.65	9.69	0.48	1.04	0.12	0.12	0.00	3.60	4.26	2.42	0.74	93.25	1.68	2.94	18.01	1.90	2.74	3.11	6.16	4.50	3.13	0.75	4.64
25	I3_SR1	SilentIntronRegion	0	15.87	2.17	9.74	4.01	0.16	18.37	3.65	9.69	0.48	1.05	0.12	0.12	0.00	3.60	4.26	2.43	0.74	93.30	1.68	2.94	18.02	1.90	2.74	3.12	6.16	4.50	3.13	0.75	4.65
26	Ix	Intron	0	30.47	3.97	8.24	4.47	0.00	32.59	5.04	13.43	1.12	1.35	0.74	0.00	0.16	4.65	10.51	4.55	0.74	122.31	2.59	1.79	29.54	5.18	6.21	6.30	8.21	6.28	3.20	0.41	9.39
27	Ix_SR1	SilentIntronRegion	0	21.26	1.55	9.27	5.58	0.00	25.82	3.45	9.86	0.36	1.39	0.30	0.00	0.00	3.19	7.49	4.72	0.05	94.89	1.03	2.47	22.03	4.30	3.17	4.30	6.05	4.36	2.28	0.26	7.54
28	Ix_AR2	ActiveIntronRegion	0	30.70	7.59	7.00	4.96	0.00	46.65	4.92	16.43	1.83	1.48	0.96	0.00	0.60	3.94	9.40	5.80	0.45	135.26	2.99	2.67	43.20	5.90	9.73	8.26	8.19	6.61	2.36	0.32	13.69
29	Ix_AR1	ActiveIntronRegion	0	40.83	3.92	8.10	2.81	0.00	29.69	6.95	15.21	1.44	1.19	1.09	0.00	0.00	6.95	14.89	3.43	1.77	143.91	4.10	0.36	27.59	5.68	6.89	7.10	10.74	8.26	4.88	0.63	8.10
30	E4_Aa	NovelBoundary	0	15.87	0.00	15.32	0.00	0.00	16.73	5.32	9.70	0.00	1.96	0.00	0.00	0.00	7.47	8.17	3.52	2.79	134.21	0.00	3.39	35.14	4.42	6.89	6.04	13.68	0.00	0.00	0.00	6.47
31	ER4a	ExonRegion	0	76.63	25.92	135.28	39.96	6.31	157.97	51.56	166.68	8.68	27.39	12.58	17.36	6.16	56.28	29.91	29.04	14.65	976.74	21.05	42.91	380.65	144.77	303.86	126.65	114.05	91.29	80.78	23.64	219.22
32	E4_Da	KnownBoundary	0	80.81	44.31	243.89	28.69	0.00	216.97	77.13	230.76	14.07	26.96	14.43	31.69	23.79	59.00	32.89	46.51	26.47	1395.52	48.55	52.68	569.13	168.07	385.92	176.52	178.40	166.68	118.43	54.32	447.10
33	ER4b	ExonRegion	0	91.09	35.71	186.76	50.45	7.89	175.83	59.71	217.90	12.98	31.17	13.02	17.42	11.84	57.38	51.52	35.44	15.64	1007.14	27.94	47.73	482.22	151.43	311.02	186.82	139.05	106.72	100.35	30.81	321.28
34	E4_Db	KnownBoundary	0	74.50	76.49	116.73	40.33	5.89	149.44	62.02	215.83	9.62	22.13	10.47	9.01	8.44	56.30	79.93	17.59	16.32	946.53	32.37	33.33	424.29	88.63	228.17	195.18	127.98	91.62	106.60	21.03	232.32
35	E4b_E4b	KnownJunction	0	22.12	17.94	17.96	31.71	0.00	35.22	38.05	74.55	4.66	11.62	3.16	4.46	3.06	12.03	32.49	10.48	5.09	20.93	0.00	4.13	84.63	40.69	54.57	74.47	39.17	14.38	20.92	8.58	121.72
36	ER4c	ExonRegion	0	81.76	48.72	179.18	44.15	10.45	247.14	63.15	262.61	20.81	33.24	20.97	16.51	14.47	57.89	76.36	42.39	14.74	757.49	27.63	39.84	682.83	126.50	291.08	286.86	193.57	106.22	239.90	25.10	414.20
37	E4_Ab	KnownBoundary	0	153.30	82.21	240.80	103.32	14.74	660.77	148.70	452.67	70.16	75.74	27.21	25.87	37.70	76.13	148.89	85.83	24.27	158.48	8.09	80.88	1943.67	232.54	561.15	687.64	467.05	176.59	613.66	77.51	876.87
38	ER4d	ExonRegion	0	81.54	72.71	156.13	69.38	7.52	258.77	123.10	281.11	39.93	40.15	31.83	20.93	16.61	52.85	111.82	47.58	18.73	753.87	41.83	50.11	675.85	131.40	246.08	369.54	196.50	94.96	249.18	31.43	461.32
39	E4_Dc	KnownBoundary	0	32.85	25.21	109.23	19.20	6.04	46.62	23.63	49.96	21.86	16.38	10.06	2.62	10.70	18.72	116.80	14.53	2.61	298.21	24.28	21.17	102.48	47.69	128.34	107.55	80.13	57.93	36.13	13.79	232.58
40	ER4e	ExonRegion	0	17.50	14.44	48.17	11.90	11.12	21.36	10.22	26.55	8.99	7.99	6.14	1.15	2.96	11.83	36.60	4.71	0.84	234.77	12.00	13.40	63.96	26.03	77.80	62.63	48.66	26.61	19.93	7.35	93.55
41	ER4f	ExonRegion	0	6.43	1.64	24.69	3.66	9.96	2.75	0.00	5.52	1.12	1.44	1.19	0.00	0.00	4.99	0.00	0.00	0.00	62.77	0.00	8.43	17.12	7.21	15.37	16.13	12.86	3.14	9.16	1.63	14.09
42	ER4g	ExonRegion	0	4.29	0.00	3.37	0.00	0.00	1.37	0.00	1.84	0.00	1.44	0.00	0.00	0.00	2.72	0.00	0.00	0.00	13.65	0.00	2.81	4.28	3.61	1.81	8.60	4.29	1.57	7.33	0.00	5.37